PDB Short entry for 2Z4I HEADER SIGNALING PROTEIN ACTIVATOR 18-JUN-07 2Z4I TITLE CRYSTAL STRUCTURE OF THE CPX PATHWAY ACTIVATOR NLPE FROM ESCHERICHIA TITLE 2 COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: COPPER HOMEOSTASIS PROTEIN CUTF; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LIPOPROTEIN NLPE; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: NLPE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PKT-MNLPE KEYWDS OUTER MEMBLANE LIPOPROTEIN, BETA BARREL, OB-FOLD, 3D DOMAIN SWAPPING, KEYWDS 2 SIGNALING PROTEIN ACTIVATOR EXPDTA X-RAY DIFFRACTION AUTHOR Y.HIRANO,M.M.HOSSAIN,K.TAKEDA,H.TOKUDA,K.MIKI REVDAT 3 10-NOV-21 2Z4I 1 SEQADV LINK REVDAT 2 24-FEB-09 2Z4I 1 VERSN REVDAT 1 04-SEP-07 2Z4I 0 JRNL AUTH Y.HIRANO,M.M.HOSSAIN,K.TAKEDA,H.TOKUDA,K.MIKI JRNL TITL STRUCTURAL STUDIES OF THE CPX PATHWAY ACTIVATOR NLPE ON THE JRNL TITL 2 OUTER MEMBRANE OF ESCHERICHIA COLI JRNL REF STRUCTURE V. 15 963 2007 JRNL REFN ISSN 0969-2126 JRNL PMID 17698001 JRNL DOI 10.1016/J.STR.2007.06.014 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2227445.400 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 89.4 REMARK 3 NUMBER OF REFLECTIONS : 33171 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1584 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.76 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 69.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4082 REMARK 3 BIN R VALUE (WORKING SET) : 0.3400 REMARK 3 BIN FREE R VALUE : 0.3830 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 217 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.026 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2866 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 24 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -8.93000 REMARK 3 B22 (A**2) : -8.93000 REMARK 3 B33 (A**2) : 17.87000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM SIGMAA (A) : 0.56 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.42 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.62 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.700 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.570 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.820 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.290 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.450 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 37.37 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : LIGAND.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : LIGAND.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE FACTOR FILE CONTAINS REMARK 3 FRIEDEL PAIRS. REMARK 4 REMARK 4 2Z4I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000027510. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-05; NULL REMARK 200 TEMPERATURE (KELVIN) : 95; 95 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SPRING-8; SPRING-8 REMARK 200 BEAMLINE : BL44B2; BL44B2 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000; 0.9792, 0.9797, 0.9700, REMARK 200 0.9900 REMARK 200 MONOCHROMATOR : SI 111; SI 111 REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210; ADSC QUANTUM REMARK 200 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33952 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 24.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.28700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE STRUCTURE FACTOR FILE CONTAINS FRIEDEL PAIRS. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% PEG 8000, 0.05M SODIUM CITRATE, REMARK 280 0.07M ZINC SULFATE, 40% D-SORBITOL, PH 4.2, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.22800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 60.71100 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 60.71100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 63.34200 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 60.71100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 60.71100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 21.11400 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 60.71100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.71100 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 63.34200 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 60.71100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.71100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 21.11400 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 42.22800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A MONOMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 ASN A 2 REMARK 465 ASN A 3 REMARK 465 ARG A 4 REMARK 465 ALA A 5 REMARK 465 GLU A 6 REMARK 465 VAL A 7 REMARK 465 ASP A 8 REMARK 465 THR A 9 REMARK 465 LEU A 10 REMARK 465 SER A 11 REMARK 465 PRO A 12 REMARK 465 ALA A 13 REMARK 465 GLN A 14 REMARK 465 ALA A 15 REMARK 465 ALA A 16 REMARK 465 GLU A 17 REMARK 465 LEU A 18 REMARK 465 LYS A 19 REMARK 465 PRO A 188 REMARK 465 ASP A 189 REMARK 465 THR A 190 REMARK 465 GLY A 191 REMARK 465 ALA A 192 REMARK 465 GLY A 215 REMARK 465 GLN A 216 REMARK 465 MSE A 217 REMARK 465 ALA A 218 REMARK 465 SER A 219 REMARK 465 MSE A 220 REMARK 465 THR A 221 REMARK 465 GLY A 222 REMARK 465 GLY A 223 REMARK 465 GLN A 224 REMARK 465 GLN A 225 REMARK 465 MSE A 226 REMARK 465 GLY A 227 REMARK 465 HIS A 228 REMARK 465 HIS A 229 REMARK 465 HIS A 230 REMARK 465 HIS A 231 REMARK 465 HIS A 232 REMARK 465 HIS A 233 REMARK 465 ALA B 1 REMARK 465 ASN B 2 REMARK 465 ASN B 3 REMARK 465 ARG B 4 REMARK 465 ALA B 5 REMARK 465 GLU B 6 REMARK 465 VAL B 7 REMARK 465 ASP B 8 REMARK 465 THR B 9 REMARK 465 LEU B 10 REMARK 465 SER B 11 REMARK 465 PRO B 12 REMARK 465 ALA B 13 REMARK 465 GLN B 14 REMARK 465 ALA B 15 REMARK 465 ALA B 16 REMARK 465 GLU B 17 REMARK 465 LEU B 18 REMARK 465 LYS B 19 REMARK 465 PRO B 20 REMARK 465 GLY B 215 REMARK 465 GLN B 216 REMARK 465 MSE B 217 REMARK 465 ALA B 218 REMARK 465 SER B 219 REMARK 465 MSE B 220 REMARK 465 THR B 221 REMARK 465 GLY B 222 REMARK 465 GLY B 223 REMARK 465 GLN B 224 REMARK 465 GLN B 225 REMARK 465 MSE B 226 REMARK 465 GLY B 227 REMARK 465 HIS B 228 REMARK 465 HIS B 229 REMARK 465 HIS B 230 REMARK 465 HIS B 231 REMARK 465 HIS B 232 REMARK 465 HIS B 233 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 20 CG CD REMARK 470 LYS A 45 CG CD CE NZ REMARK 470 ARG A 59 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 60 CG CD OE1 OE2 REMARK 470 GLU A 61 CG CD OE1 OE2 REMARK 470 LYS A 93 CG CD CE NZ REMARK 470 GLU A 116 CG CD OE1 OE2 REMARK 470 HIS A 169 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 171 CG CD OE1 OE2 REMARK 470 LYS A 172 CG CD CE NZ REMARK 470 LYS A 204 CG CD CE NZ REMARK 470 ASN A 208 CG OD1 ND2 REMARK 470 GLN B 23 CG CD OE1 NE2 REMARK 470 LYS B 45 CG CD CE NZ REMARK 470 GLU B 61 CG CD OE1 OE2 REMARK 470 ARG B 73 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 76 CG OD1 OD2 REMARK 470 LYS B 77 CG CD CE NZ REMARK 470 LYS B 84 CG CD CE NZ REMARK 470 GLU B 86 CG CD OE1 OE2 REMARK 470 ARG B 91 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 93 CG CD CE NZ REMARK 470 GLU B 158 CG CD OE1 OE2 REMARK 470 GLU B 171 CG CD OE1 OE2 REMARK 470 LYS B 172 CG CD CE NZ REMARK 470 LYS B 204 CG CD CE NZ REMARK 470 GLN B 209 CG CD OE1 NE2 REMARK 470 LEU B 214 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 GLN A 209 NE2 GLN A 209 8554 1.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MSE A 21 146.88 -176.68 REMARK 500 ASP A 46 32.43 -83.77 REMARK 500 THR A 74 -148.52 -86.45 REMARK 500 ALA A 75 -81.81 -50.40 REMARK 500 MSE A 136 123.17 -175.00 REMARK 500 ALA A 137 62.83 60.14 REMARK 500 SER A 170 148.26 -173.34 REMARK 500 GLU A 171 59.61 -103.94 REMARK 500 SER A 213 171.94 -49.68 REMARK 500 ASP B 46 15.47 -67.83 REMARK 500 GLU B 60 105.33 -52.45 REMARK 500 THR B 74 -118.47 -61.50 REMARK 500 ALA B 75 -128.15 -73.18 REMARK 500 LYS B 93 94.55 -179.39 REMARK 500 ARG B 102 -48.84 157.87 REMARK 500 SER B 120 100.56 -45.76 REMARK 500 SER B 121 135.59 162.24 REMARK 500 MSE B 136 135.10 -170.17 REMARK 500 PRO B 173 161.03 -49.48 REMARK 500 ASN B 208 34.50 -84.65 REMARK 500 SER B 213 30.80 -70.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Z4H RELATED DB: PDB REMARK 900 THE UNLABELED PROTEIN DBREF 2Z4I A 1 216 UNP P40710 CUTF_ECOLI 21 236 DBREF 2Z4I B 1 216 UNP P40710 CUTF_ECOLI 21 236 SEQADV 2Z4I ALA A 1 UNP P40710 CYS 21 ENGINEERED MUTATION SEQADV 2Z4I MSE A 217 UNP P40710 EXPRESSION TAG SEQADV 2Z4I ALA A 218 UNP P40710 EXPRESSION TAG SEQADV 2Z4I SER A 219 UNP P40710 EXPRESSION TAG SEQADV 2Z4I MSE A 220 UNP P40710 EXPRESSION TAG SEQADV 2Z4I THR A 221 UNP P40710 EXPRESSION TAG SEQADV 2Z4I GLY A 222 UNP P40710 EXPRESSION TAG SEQADV 2Z4I GLY A 223 UNP P40710 EXPRESSION TAG SEQADV 2Z4I GLN A 224 UNP P40710 EXPRESSION TAG SEQADV 2Z4I GLN A 225 UNP P40710 EXPRESSION TAG SEQADV 2Z4I MSE A 226 UNP P40710 EXPRESSION TAG SEQADV 2Z4I GLY A 227 UNP P40710 EXPRESSION TAG SEQADV 2Z4I HIS A 228 UNP P40710 EXPRESSION TAG SEQADV 2Z4I HIS A 229 UNP P40710 EXPRESSION TAG SEQADV 2Z4I HIS A 230 UNP P40710 EXPRESSION TAG SEQADV 2Z4I HIS A 231 UNP P40710 EXPRESSION TAG SEQADV 2Z4I HIS A 232 UNP P40710 EXPRESSION TAG SEQADV 2Z4I HIS A 233 UNP P40710 EXPRESSION TAG SEQADV 2Z4I ALA B 1 UNP P40710 CYS 21 ENGINEERED MUTATION SEQADV 2Z4I MSE B 217 UNP P40710 EXPRESSION TAG SEQADV 2Z4I ALA B 218 UNP P40710 EXPRESSION TAG SEQADV 2Z4I SER B 219 UNP P40710 EXPRESSION TAG SEQADV 2Z4I MSE B 220 UNP P40710 EXPRESSION TAG SEQADV 2Z4I THR B 221 UNP P40710 EXPRESSION TAG SEQADV 2Z4I GLY B 222 UNP P40710 EXPRESSION TAG SEQADV 2Z4I GLY B 223 UNP P40710 EXPRESSION TAG SEQADV 2Z4I GLN B 224 UNP P40710 EXPRESSION TAG SEQADV 2Z4I GLN B 225 UNP P40710 EXPRESSION TAG SEQADV 2Z4I MSE B 226 UNP P40710 EXPRESSION TAG SEQADV 2Z4I GLY B 227 UNP P40710 EXPRESSION TAG SEQADV 2Z4I HIS B 228 UNP P40710 EXPRESSION TAG SEQADV 2Z4I HIS B 229 UNP P40710 EXPRESSION TAG SEQADV 2Z4I HIS B 230 UNP P40710 EXPRESSION TAG SEQADV 2Z4I HIS B 231 UNP P40710 EXPRESSION TAG SEQADV 2Z4I HIS B 232 UNP P40710 EXPRESSION TAG SEQADV 2Z4I HIS B 233 UNP P40710 EXPRESSION TAG SEQRES 1 A 233 ALA ASN ASN ARG ALA GLU VAL ASP THR LEU SER PRO ALA SEQRES 2 A 233 GLN ALA ALA GLU LEU LYS PRO MSE PRO GLN SER TRP ARG SEQRES 3 A 233 GLY VAL LEU PRO CYS ALA ASP CYS GLU GLY ILE GLU THR SEQRES 4 A 233 SER LEU PHE LEU GLU LYS ASP GLY THR TRP VAL MSE ASN SEQRES 5 A 233 GLU ARG TYR LEU GLY ALA ARG GLU GLU PRO SER SER PHE SEQRES 6 A 233 ALA SER TYR GLY THR TRP ALA ARG THR ALA ASP LYS LEU SEQRES 7 A 233 VAL LEU THR ASP SER LYS GLY GLU LYS SER TYR TYR ARG SEQRES 8 A 233 ALA LYS GLY ASP ALA LEU GLU MSE LEU ASP ARG GLU GLY SEQRES 9 A 233 ASN PRO ILE GLU SER GLN PHE ASN TYR THR LEU GLU ALA SEQRES 10 A 233 ALA GLN SER SER LEU PRO MSE THR PRO MSE THR LEU ARG SEQRES 11 A 233 GLY MSE TYR PHE TYR MSE ALA ASP ALA ALA THR PHE THR SEQRES 12 A 233 ASP CYS ALA THR GLY LYS ARG PHE MSE VAL ALA ASN ASN SEQRES 13 A 233 ALA GLU LEU GLU ARG SER TYR LEU ALA ALA ARG GLY HIS SEQRES 14 A 233 SER GLU LYS PRO VAL LEU LEU SER VAL GLU GLY HIS PHE SEQRES 15 A 233 THR LEU GLU GLY ASN PRO ASP THR GLY ALA PRO THR LYS SEQRES 16 A 233 VAL LEU ALA PRO ASP THR ALA GLY LYS PHE TYR PRO ASN SEQRES 17 A 233 GLN ASP CYS SER SER LEU GLY GLN MSE ALA SER MSE THR SEQRES 18 A 233 GLY GLY GLN GLN MSE GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 233 ALA ASN ASN ARG ALA GLU VAL ASP THR LEU SER PRO ALA SEQRES 2 B 233 GLN ALA ALA GLU LEU LYS PRO MSE PRO GLN SER TRP ARG SEQRES 3 B 233 GLY VAL LEU PRO CYS ALA ASP CYS GLU GLY ILE GLU THR SEQRES 4 B 233 SER LEU PHE LEU GLU LYS ASP GLY THR TRP VAL MSE ASN SEQRES 5 B 233 GLU ARG TYR LEU GLY ALA ARG GLU GLU PRO SER SER PHE SEQRES 6 B 233 ALA SER TYR GLY THR TRP ALA ARG THR ALA ASP LYS LEU SEQRES 7 B 233 VAL LEU THR ASP SER LYS GLY GLU LYS SER TYR TYR ARG SEQRES 8 B 233 ALA LYS GLY ASP ALA LEU GLU MSE LEU ASP ARG GLU GLY SEQRES 9 B 233 ASN PRO ILE GLU SER GLN PHE ASN TYR THR LEU GLU ALA SEQRES 10 B 233 ALA GLN SER SER LEU PRO MSE THR PRO MSE THR LEU ARG SEQRES 11 B 233 GLY MSE TYR PHE TYR MSE ALA ASP ALA ALA THR PHE THR SEQRES 12 B 233 ASP CYS ALA THR GLY LYS ARG PHE MSE VAL ALA ASN ASN SEQRES 13 B 233 ALA GLU LEU GLU ARG SER TYR LEU ALA ALA ARG GLY HIS SEQRES 14 B 233 SER GLU LYS PRO VAL LEU LEU SER VAL GLU GLY HIS PHE SEQRES 15 B 233 THR LEU GLU GLY ASN PRO ASP THR GLY ALA PRO THR LYS SEQRES 16 B 233 VAL LEU ALA PRO ASP THR ALA GLY LYS PHE TYR PRO ASN SEQRES 17 B 233 GLN ASP CYS SER SER LEU GLY GLN MSE ALA SER MSE THR SEQRES 18 B 233 GLY GLY GLN GLN MSE GLY HIS HIS HIS HIS HIS HIS MODRES 2Z4I MSE A 21 MET SELENOMETHIONINE MODRES 2Z4I MSE A 51 MET SELENOMETHIONINE MODRES 2Z4I MSE A 99 MET SELENOMETHIONINE MODRES 2Z4I MSE A 124 MET SELENOMETHIONINE MODRES 2Z4I MSE A 127 MET SELENOMETHIONINE MODRES 2Z4I MSE A 132 MET SELENOMETHIONINE MODRES 2Z4I MSE A 136 MET SELENOMETHIONINE MODRES 2Z4I MSE A 152 MET SELENOMETHIONINE MODRES 2Z4I MSE B 21 MET SELENOMETHIONINE MODRES 2Z4I MSE B 51 MET SELENOMETHIONINE MODRES 2Z4I MSE B 99 MET SELENOMETHIONINE MODRES 2Z4I MSE B 124 MET SELENOMETHIONINE MODRES 2Z4I MSE B 127 MET SELENOMETHIONINE MODRES 2Z4I MSE B 132 MET SELENOMETHIONINE MODRES 2Z4I MSE B 136 MET SELENOMETHIONINE MODRES 2Z4I MSE B 152 MET SELENOMETHIONINE HET MSE A 21 8 HET MSE A 51 8 HET MSE A 99 8 HET MSE A 124 8 HET MSE A 127 8 HET MSE A 132 8 HET MSE A 136 8 HET MSE A 152 8 HET MSE B 21 8 HET MSE B 51 8 HET MSE B 99 8 HET MSE B 124 8 HET MSE B 127 8 HET MSE B 132 8 HET MSE B 136 8 HET MSE B 152 8 HET P6G A4771 19 HET SO4 B4770 5 HETNAM MSE SELENOMETHIONINE HETNAM P6G HEXAETHYLENE GLYCOL HETNAM SO4 SULFATE ION HETSYN P6G POLYETHYLENE GLYCOL PEG400 FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 3 P6G C12 H26 O7 FORMUL 4 SO4 O4 S 2- FORMUL 5 HOH *24(H2 O) HELIX 1 1 ASN A 156 GLY A 168 1 13 HELIX 2 2 ASN B 156 ARG B 167 1 12 SHEET 1 A 9 SER A 24 CYS A 31 0 SHEET 2 A 9 CYS A 34 LEU A 43 -1 O ILE A 37 N LEU A 29 SHEET 3 A 9 THR A 48 LEU A 56 -1 O ARG A 54 N GLU A 38 SHEET 4 A 9 SER A 64 ALA A 72 -1 O SER A 67 N MSE A 51 SHEET 5 A 9 LYS A 77 ASP A 82 -1 O VAL A 79 N ALA A 72 SHEET 6 A 9 LYS A 87 LYS A 93 -1 O TYR A 90 N LEU A 78 SHEET 7 A 9 ALA A 96 LEU A 100 -1 O LEU A 100 N TYR A 89 SHEET 8 A 9 THR B 114 ALA B 117 -1 O LEU B 115 N LEU A 97 SHEET 9 A 9 SER A 24 CYS A 31 -1 N ARG A 26 O GLU B 116 SHEET 1 B 2 GLU A 108 PHE A 111 0 SHEET 2 B 2 SER B 109 ASN B 112 -1 O SER B 109 N PHE A 111 SHEET 1 C 9 THR A 114 ALA A 117 0 SHEET 2 C 9 SER B 24 LEU B 29 -1 O ARG B 26 N GLU A 116 SHEET 3 C 9 GLY B 36 LEU B 43 -1 O THR B 39 N GLY B 27 SHEET 4 C 9 THR B 48 LEU B 56 -1 O LEU B 56 N GLY B 36 SHEET 5 C 9 SER B 64 ALA B 72 -1 O SER B 67 N MSE B 51 SHEET 6 C 9 LYS B 77 ASP B 82 -1 O VAL B 79 N ALA B 72 SHEET 7 C 9 LYS B 87 ALA B 92 -1 O SER B 88 N LEU B 80 SHEET 8 C 9 ALA B 96 MSE B 99 -1 O GLU B 98 N ARG B 91 SHEET 9 C 9 THR A 114 ALA A 117 -1 N LEU A 115 O LEU B 97 SHEET 1 D 5 ARG A 150 MSE A 152 0 SHEET 2 D 5 ALA A 140 ASP A 144 -1 N PHE A 142 O PHE A 151 SHEET 3 D 5 MSE A 127 TYR A 135 -1 N MSE A 132 O THR A 143 SHEET 4 D 5 VAL A 174 GLU A 185 -1 O LEU A 176 N GLY A 131 SHEET 5 D 5 THR A 194 PRO A 199 -1 O ALA A 198 N HIS A 181 SHEET 1 E 5 ARG A 150 MSE A 152 0 SHEET 2 E 5 ALA A 140 ASP A 144 -1 N PHE A 142 O PHE A 151 SHEET 3 E 5 MSE A 127 TYR A 135 -1 N MSE A 132 O THR A 143 SHEET 4 E 5 VAL A 174 GLU A 185 -1 O LEU A 176 N GLY A 131 SHEET 5 E 5 PHE A 205 TYR A 206 -1 O TYR A 206 N LEU A 175 SHEET 1 F 7 LYS B 204 TYR B 206 0 SHEET 2 F 7 VAL B 174 GLY B 186 -1 N LEU B 175 O TYR B 206 SHEET 3 F 7 PRO B 193 PRO B 199 -1 O ALA B 198 N HIS B 181 SHEET 4 F 7 ARG B 150 VAL B 153 1 N MSE B 152 O LEU B 197 SHEET 5 F 7 ALA B 140 ASP B 144 -1 N PHE B 142 O PHE B 151 SHEET 6 F 7 MSE B 127 TYR B 135 -1 N MSE B 132 O THR B 143 SHEET 7 F 7 VAL B 174 GLY B 186 -1 O GLY B 180 N MSE B 127 SSBOND 1 CYS A 31 CYS A 34 1555 1555 2.04 SSBOND 2 CYS A 145 CYS A 211 1555 1555 2.04 SSBOND 3 CYS B 31 CYS B 34 1555 1555 2.04 SSBOND 4 CYS B 145 CYS B 211 1555 1555 2.04 LINK C PRO A 20 N MSE A 21 1555 1555 1.33 LINK C MSE A 21 N PRO A 22 1555 1555 1.35 LINK C VAL A 50 N MSE A 51 1555 1555 1.33 LINK C MSE A 51 N ASN A 52 1555 1555 1.32 LINK C GLU A 98 N MSE A 99 1555 1555 1.33 LINK C MSE A 99 N LEU A 100 1555 1555 1.33 LINK C PRO A 123 N MSE A 124 1555 1555 1.33 LINK C MSE A 124 N THR A 125 1555 1555 1.33 LINK C PRO A 126 N MSE A 127 1555 1555 1.32 LINK C MSE A 127 N THR A 128 1555 1555 1.33 LINK C GLY A 131 N MSE A 132 1555 1555 1.33 LINK C MSE A 132 N TYR A 133 1555 1555 1.33 LINK C TYR A 135 N MSE A 136 1555 1555 1.33 LINK C MSE A 136 N ALA A 137 1555 1555 1.33 LINK C PHE A 151 N MSE A 152 1555 1555 1.33 LINK C MSE A 152 N VAL A 153 1555 1555 1.32 LINK C MSE B 21 N PRO B 22 1555 1555 1.35 LINK C VAL B 50 N MSE B 51 1555 1555 1.33 LINK C MSE B 51 N ASN B 52 1555 1555 1.33 LINK C GLU B 98 N MSE B 99 1555 1555 1.33 LINK C MSE B 99 N LEU B 100 1555 1555 1.34 LINK C PRO B 123 N MSE B 124 1555 1555 1.33 LINK C MSE B 124 N THR B 125 1555 1555 1.32 LINK C PRO B 126 N MSE B 127 1555 1555 1.33 LINK C MSE B 127 N THR B 128 1555 1555 1.33 LINK C GLY B 131 N MSE B 132 1555 1555 1.33 LINK C MSE B 132 N TYR B 133 1555 1555 1.34 LINK C TYR B 135 N MSE B 136 1555 1555 1.33 LINK C MSE B 136 N ALA B 137 1555 1555 1.33 LINK C PHE B 151 N MSE B 152 1555 1555 1.33 LINK C MSE B 152 N VAL B 153 1555 1555 1.32 CRYST1 121.422 121.422 84.456 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008236 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008236 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011840 0.00000