PDB Short entry for 2Z5X HEADER OXIDOREDUCTASE 20-JUL-07 2Z5X TITLE CRYSTAL STRUCTURE OF HUMAN MONOAMINE OXIDASE A WITH HARMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINE OXIDASE [FLAVIN-CONTAINING] A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 12-524; COMPND 5 SYNONYM: MONOAMINE OXIDASE TYPE A, MAO-A; COMPND 6 EC: 1.4.3.4; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 6 EXPRESSION_SYSTEM_COMMON: BAKER'S YEAST; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4932; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BJ2168; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: YEP51 KEYWDS HUMAN MONOAMINE OXIDASE A, FAD, HARMINE, DIMETHYLDECYLPHOSPHINE KEYWDS 2 OXIDE, SINGLE HELIX TRANS-MEMBRANE PROTEIN, CATECHOLAMINE KEYWDS 3 METABOLISM, FLAVOPROTEIN, MITOCHONDRION, NEUROTRANSMITTER KEYWDS 4 DEGRADATION, OXIDOREDUCTASE, TRANSMEMBRANE EXPDTA X-RAY DIFFRACTION AUTHOR S.Y.SON,J.MA,M.YOSHIMURA,T.TSUKIHARA REVDAT 5 01-NOV-23 2Z5X 1 REMARK HETSYN REVDAT 4 13-JUL-11 2Z5X 1 VERSN REVDAT 3 24-FEB-09 2Z5X 1 VERSN REVDAT 2 22-APR-08 2Z5X 1 JRNL REVDAT 1 01-APR-08 2Z5X 0 JRNL AUTH S.Y.SON,J.MA,Y.KONDOU,M.YOSHIMURA,E.YAMASHITA,T.TSUKIHARA JRNL TITL STRUCTURE OF HUMAN MONOAMINE OXIDASE A AT 2.2-A RESOLUTION: JRNL TITL 2 THE CONTROL OF OPENING THE ENTRY FOR SUBSTRATES/INHIBITORS JRNL REF PROC.NATL.ACAD.SCI.USA V. 105 5739 2008 JRNL REFN ISSN 0027-8424 JRNL PMID 18391214 JRNL DOI 10.1073/PNAS.0710626105 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 39352 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2091 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2924 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.2820 REMARK 3 BIN FREE R VALUE SET COUNT : 146 REMARK 3 BIN FREE R VALUE : 0.3640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4100 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 115 REMARK 3 SOLVENT ATOMS : 182 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.67 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.05000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : -0.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.203 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.191 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.151 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.103 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4320 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5856 ; 2.125 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 512 ; 7.304 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 187 ;38.668 ;23.636 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 731 ;19.396 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;22.030 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 627 ; 0.149 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3208 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2363 ; 0.241 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2950 ; 0.329 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 285 ; 0.173 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 35 ; 0.315 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.014 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2609 ; 1.181 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4125 ; 1.950 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2021 ; 3.171 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1731 ; 4.678 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2Z5X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000027561. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.60 REMARK 200 NUMBER OF CRYSTALS USED : 5 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER DIP-6040 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41775 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 60.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.13800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.67000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1O5W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M AMMONIUM SULFATE, 100MM CITRIC REMARK 280 ACID, PH 5.60, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y+1/2,-Z REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 67.63150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 109.35300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 67.63150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 109.35300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 67.63150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 109.35300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 67.63150 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 109.35300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 79200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -110.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 135.26300 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 135.26300 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 -54.37300 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -54.37300 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 406 C8M FAD A 600 1.65 REMARK 500 NH1 ARG A 457 O HOH A 761 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 83 CG GLU A 83 CD 0.095 REMARK 500 VAL A 303 CB VAL A 303 CG1 -0.132 REMARK 500 CYS A 374 CB CYS A 374 SG -0.105 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 328 N - CA - CB ANGL. DEV. = -11.9 DEGREES REMARK 500 ARG A 454 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 454 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 53 107.55 -160.16 REMARK 500 ASP A 61 -76.60 62.84 REMARK 500 ALA A 68 -44.90 -137.70 REMARK 500 THR A 73 -10.25 84.87 REMARK 500 ALA A 142 56.10 -143.67 REMARK 500 THR A 183 44.57 33.80 REMARK 500 VAL A 210 -79.16 -89.23 REMARK 500 ALA A 355 -143.18 55.41 REMARK 500 ALA A 433 -150.04 -118.19 REMARK 500 THR A 512 -34.31 -38.45 REMARK 500 LEU A 523 51.67 -113.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HRM A 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCX A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCX A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Z5Y RELATED DB: PDB DBREF 2Z5X A 12 524 UNP P21397 AOFA_HUMAN 12 524 SEQRES 1 A 513 HIS MET PHE ASP VAL VAL VAL ILE GLY GLY GLY ILE SER SEQRES 2 A 513 GLY LEU SER ALA ALA LYS LEU LEU THR GLU TYR GLY VAL SEQRES 3 A 513 SER VAL LEU VAL LEU GLU ALA ARG ASP ARG VAL GLY GLY SEQRES 4 A 513 ARG THR TYR THR ILE ARG ASN GLU HIS VAL ASP TYR VAL SEQRES 5 A 513 ASP VAL GLY GLY ALA TYR VAL GLY PRO THR GLN ASN ARG SEQRES 6 A 513 ILE LEU ARG LEU SER LYS GLU LEU GLY ILE GLU THR TYR SEQRES 7 A 513 LYS VAL ASN VAL SER GLU ARG LEU VAL GLN TYR VAL LYS SEQRES 8 A 513 GLY LYS THR TYR PRO PHE ARG GLY ALA PHE PRO PRO VAL SEQRES 9 A 513 TRP ASN PRO ILE ALA TYR LEU ASP TYR ASN ASN LEU TRP SEQRES 10 A 513 ARG THR ILE ASP ASN MET GLY LYS GLU ILE PRO THR ASP SEQRES 11 A 513 ALA PRO TRP GLU ALA GLN HIS ALA ASP LYS TRP ASP LYS SEQRES 12 A 513 MET THR MET LYS GLU LEU ILE ASP LYS ILE CYS TRP THR SEQRES 13 A 513 LYS THR ALA ARG ARG PHE ALA TYR LEU PHE VAL ASN ILE SEQRES 14 A 513 ASN VAL THR SER GLU PRO HIS GLU VAL SER ALA LEU TRP SEQRES 15 A 513 PHE LEU TRP TYR VAL LYS GLN CYS GLY GLY THR THR ARG SEQRES 16 A 513 ILE PHE SER VAL THR ASN GLY GLY GLN GLU ARG LYS PHE SEQRES 17 A 513 VAL GLY GLY SER GLY GLN VAL SER GLU ARG ILE MET ASP SEQRES 18 A 513 LEU LEU GLY ASP GLN VAL LYS LEU ASN HIS PRO VAL THR SEQRES 19 A 513 HIS VAL ASP GLN SER SER ASP ASN ILE ILE ILE GLU THR SEQRES 20 A 513 LEU ASN HIS GLU HIS TYR GLU CYS LYS TYR VAL ILE ASN SEQRES 21 A 513 ALA ILE PRO PRO THR LEU THR ALA LYS ILE HIS PHE ARG SEQRES 22 A 513 PRO GLU LEU PRO ALA GLU ARG ASN GLN LEU ILE GLN ARG SEQRES 23 A 513 LEU PRO MET GLY ALA VAL ILE LYS CYS MET MET TYR TYR SEQRES 24 A 513 LYS GLU ALA PHE TRP LYS LYS LYS ASP TYR CYS GLY CYS SEQRES 25 A 513 MET ILE ILE GLU ASP GLU ASP ALA PRO ILE SER ILE THR SEQRES 26 A 513 LEU ASP ASP THR LYS PRO ASP GLY SER LEU PRO ALA ILE SEQRES 27 A 513 MET GLY PHE ILE LEU ALA ARG LYS ALA ASP ARG LEU ALA SEQRES 28 A 513 LYS LEU HIS LYS GLU ILE ARG LYS LYS LYS ILE CYS GLU SEQRES 29 A 513 LEU TYR ALA LYS VAL LEU GLY SER GLN GLU ALA LEU HIS SEQRES 30 A 513 PRO VAL HIS TYR GLU GLU LYS ASN TRP CYS GLU GLU GLN SEQRES 31 A 513 TYR SER GLY GLY CYS TYR THR ALA TYR PHE PRO PRO GLY SEQRES 32 A 513 ILE MET THR GLN TYR GLY ARG VAL ILE ARG GLN PRO VAL SEQRES 33 A 513 GLY ARG ILE PHE PHE ALA GLY THR GLU THR ALA THR LYS SEQRES 34 A 513 TRP SER GLY TYR MET GLU GLY ALA VAL GLU ALA GLY GLU SEQRES 35 A 513 ARG ALA ALA ARG GLU VAL LEU ASN GLY LEU GLY LYS VAL SEQRES 36 A 513 THR GLU LYS ASP ILE TRP VAL GLN GLU PRO GLU SER LYS SEQRES 37 A 513 ASP VAL PRO ALA VAL GLU ILE THR HIS THR PHE TRP GLU SEQRES 38 A 513 ARG ASN LEU PRO SER VAL SER GLY LEU LEU LYS ILE ILE SEQRES 39 A 513 GLY PHE SER THR SER VAL THR ALA LEU GLY PHE VAL LEU SEQRES 40 A 513 TYR LYS TYR LYS LEU LEU HET FAD A 600 53 HET HRM A 700 16 HET DCX A 1 14 HET DCX A 2 14 HET GOL A 701 6 HET GOL A 702 6 HET GOL A 3 6 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM HRM 7-METHOXY-1-METHYL-9H-BETA-CARBOLINE HETNAM DCX DECYL(DIMETHYL)PHOSPHINE OXIDE HETNAM GOL GLYCEROL HETSYN HRM 7-METHOXY-1-METHYL-9H-PYRIDO[3,4-B]INDOL; HARMINE HETSYN DCX DIMETHYLDECYLPHOSPHINE OXIDE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 HRM C13 H12 N2 O FORMUL 4 DCX 2(C12 H27 O P) FORMUL 6 GOL 3(C3 H8 O3) FORMUL 9 HOH *182(H2 O) HELIX 1 1 GLY A 22 TYR A 35 1 14 HELIX 2 2 GLN A 74 LEU A 84 1 11 HELIX 3 3 ASN A 117 GLU A 137 1 21 HELIX 4 4 ALA A 142 ALA A 146 5 5 HELIX 5 5 HIS A 148 MET A 155 1 8 HELIX 6 6 THR A 156 CYS A 165 1 10 HELIX 7 7 THR A 167 THR A 183 1 17 HELIX 8 8 SER A 190 GLN A 200 1 11 HELIX 9 9 GLY A 203 SER A 209 1 7 HELIX 10 10 SER A 223 GLY A 235 1 13 HELIX 11 11 PRO A 274 ALA A 279 1 6 HELIX 12 12 PRO A 288 ARG A 297 1 10 HELIX 13 13 ALA A 313 LYS A 318 1 6 HELIX 14 14 ALA A 355 ALA A 362 1 8 HELIX 15 15 HIS A 365 GLY A 382 1 18 HELIX 16 16 SER A 383 HIS A 388 5 6 HELIX 17 17 CYS A 398 GLU A 400 5 3 HELIX 18 18 GLY A 414 GLY A 420 1 7 HELIX 19 19 ARG A 421 ILE A 423 5 3 HELIX 20 20 GLY A 434 ALA A 438 5 5 HELIX 21 21 TYR A 444 LEU A 463 1 20 HELIX 22 22 THR A 467 ILE A 471 5 5 HELIX 23 23 THR A 489 LEU A 495 1 7 HELIX 24 24 SER A 497 TYR A 521 1 25 SHEET 1 A 5 VAL A 238 LYS A 239 0 SHEET 2 A 5 VAL A 39 LEU A 42 1 N VAL A 41 O LYS A 239 SHEET 3 A 5 VAL A 16 ILE A 19 1 N VAL A 18 O LEU A 42 SHEET 4 A 5 TYR A 268 ASN A 271 1 O TYR A 268 N VAL A 17 SHEET 5 A 5 ILE A 430 PHE A 432 1 O PHE A 431 N VAL A 269 SHEET 1 B 2 THR A 54 ASN A 57 0 SHEET 2 B 2 ASP A 61 ASP A 64 -1 O VAL A 63 N ILE A 55 SHEET 1 C 2 THR A 88 LYS A 90 0 SHEET 2 C 2 ARG A 217 PHE A 219 -1 O LYS A 218 N TYR A 89 SHEET 1 D 3 LYS A 104 PHE A 108 0 SHEET 2 D 3 ARG A 96 VAL A 101 -1 N GLN A 99 O TYR A 106 SHEET 3 D 3 TYR A 320 GLU A 327 1 O ILE A 325 N VAL A 98 SHEET 1 E 4 HIS A 263 CYS A 266 0 SHEET 2 E 4 ILE A 254 THR A 258 -1 N ILE A 256 O TYR A 264 SHEET 3 E 4 VAL A 244 ASP A 248 -1 N HIS A 246 O GLU A 257 SHEET 4 E 4 HIS A 282 ARG A 284 1 O ARG A 284 N VAL A 247 SHEET 1 F 4 ILE A 335 ASP A 338 0 SHEET 2 F 4 ALA A 348 LEU A 354 -1 O MET A 350 N LEU A 337 SHEET 3 F 4 VAL A 303 TYR A 309 -1 N CYS A 306 O GLY A 351 SHEET 4 F 4 HIS A 391 ASN A 396 -1 O GLU A 393 N MET A 307 CISPEP 1 ARG A 284 PRO A 285 0 -8.17 CISPEP 2 CYS A 406 TYR A 407 0 -10.88 SITE 1 AC1 39 ILE A 19 GLY A 20 GLY A 22 ILE A 23 SITE 2 AC1 39 SER A 24 LEU A 42 GLU A 43 ALA A 44 SITE 3 AC1 39 ARG A 45 GLY A 49 GLY A 50 ARG A 51 SITE 4 AC1 39 THR A 52 GLY A 66 GLY A 67 ALA A 68 SITE 5 AC1 39 TYR A 69 PRO A 243 ALA A 272 ILE A 273 SITE 6 AC1 39 LEU A 277 TRP A 397 TYR A 402 CYS A 406 SITE 7 AC1 39 TYR A 407 GLY A 434 THR A 435 GLY A 443 SITE 8 AC1 39 TYR A 444 MET A 445 ALA A 448 HOH A 704 SITE 9 AC1 39 HOH A 711 HOH A 717 HOH A 723 HOH A 725 SITE 10 AC1 39 HOH A 726 HOH A 727 HOH A 762 SITE 1 AC2 11 ILE A 180 ASN A 181 PHE A 208 GLN A 215 SITE 2 AC2 11 ILE A 335 LEU A 337 PHE A 352 TYR A 407 SITE 3 AC2 11 TYR A 444 HOH A 726 HOH A 746 SITE 1 AC3 4 TRP A 116 PRO A 118 TYR A 121 THR A 509 SITE 1 AC4 2 THR A 489 TRP A 491 SITE 1 AC5 6 ARG A 45 ASP A 46 ARG A 47 LYS A 395 SITE 2 AC5 6 GLU A 400 HOH A 790 SITE 1 AC6 10 TYR A 62 ASP A 64 TYR A 89 LYS A 218 SITE 2 AC6 10 PHE A 219 GLY A 222 ASP A 339 LYS A 341 SITE 3 AC6 10 HOH A 786 HOH A 875 SITE 1 AC7 9 ASN A 75 LEU A 78 ARG A 79 LYS A 82 SITE 2 AC7 9 PRO A 476 SER A 478 ASP A 480 HOH A 802 SITE 3 AC7 9 HOH A 879 CRYST1 135.263 218.706 54.373 90.00 90.00 90.00 C 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007393 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004572 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018392 0.00000