PDB Short entry for 2ZEB HEADER HYDROLASE 08-DEC-07 2ZEB TITLE POTENT, NONPEPTIDE INHIBITORS OF HUMAN MAST CELL TRYPTASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRYPTASE BETA 2; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 31-273; COMPND 5 EC: 3.4.21.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TPSB2 KEYWDS TRYPTASE, SERINE PROTEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.C.SPURLINO,F.LEWANDOWSKI,C.MILLIGAN REVDAT 1 09-DEC-08 2ZEB 0 JRNL AUTH M.J.COSTANZO,S.C.YABUT,H.-C.ZHANG,K.B.WHITE, JRNL AUTH 2 L.DE GARAVILLA,Y.WANG,L.K.MINOR,B.A.TOUNGE, JRNL AUTH 3 A.N.BARNAKOV,F.LEWANDOWSKI,C.MILLIGAN,J.C.SPURLINO, JRNL AUTH 4 W.M.ABRAHAM,V.BOSWELL-SMITH,C.P.PAGE,B.E.MARYANOFF JRNL TITL POTENT, NONPEPTIDE INHIBITORS OF HUMAN MAST CELL JRNL TITL 2 TRYPTASE. SYNTHESIS AND BIOLOGICAL EVALUATION OF JRNL TITL 3 NOVEL SPIROCYCLIC PIPERIDINE AMIDE DERIVATIVES JRNL REF BIOORG.MED.CHEM.LETT. V. 18 2114 2008 JRNL REFN ISSN 0960-894X JRNL PMID 18272363 JRNL DOI 10.1016/J.BMCL.2008.01.093 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 38453 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1945 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.8850 - 10.3780 0.93 520 0 0.1720 0.0000 REMARK 3 2 10.3780 - 8.2600 0.94 518 0 0.1410 0.0000 REMARK 3 3 8.2600 - 7.2220 0.94 537 0 0.1630 0.0000 REMARK 3 4 7.2220 - 6.5650 0.95 523 0 0.1670 0.0000 REMARK 3 5 6.5650 - 6.0960 0.95 524 0 0.1570 0.0000 REMARK 3 6 6.0960 - 5.7380 0.95 513 0 0.1670 0.0000 REMARK 3 7 5.7380 - 5.4510 0.94 521 0 0.1480 0.0000 REMARK 3 8 5.4510 - 5.2140 0.94 520 0 0.1470 0.0000 REMARK 3 9 5.2140 - 5.0140 0.93 510 0 0.1330 0.0000 REMARK 3 10 5.0140 - 4.8410 0.95 503 0 0.1350 0.0000 REMARK 3 11 4.8410 - 4.6900 0.94 530 0 0.1220 0.0000 REMARK 3 12 4.6900 - 4.5560 0.94 531 0 0.1300 0.0000 REMARK 3 13 4.5560 - 4.4360 0.95 503 0 0.1240 0.0000 REMARK 3 14 4.4360 - 4.3280 0.94 498 0 0.1200 0.0000 REMARK 3 15 4.3280 - 4.2300 0.93 537 0 0.1300 0.0000 REMARK 3 16 4.2300 - 4.1400 0.94 498 0 0.1330 0.0000 REMARK 3 17 4.1400 - 4.0570 0.93 514 0 0.1290 0.0000 REMARK 3 18 4.0570 - 3.9810 0.93 527 0 0.1330 0.0000 REMARK 3 19 3.9810 - 3.9100 0.93 495 0 0.1410 0.0000 REMARK 3 20 3.9100 - 3.8430 0.94 524 0 0.1440 0.0000 REMARK 3 21 3.8430 - 3.7810 0.93 485 0 0.1660 0.0000 REMARK 3 22 3.7810 - 3.7230 0.94 515 0 0.1530 0.0000 REMARK 3 23 3.7230 - 3.6690 0.92 507 0 0.1510 0.0000 REMARK 3 24 3.6690 - 3.6170 0.93 521 0 0.1500 0.0000 REMARK 3 25 3.6170 - 3.5680 0.94 504 0 0.1660 0.0000 REMARK 3 26 3.5680 - 3.5220 0.93 519 0 0.1620 0.0000 REMARK 3 27 3.5220 - 3.4780 0.94 494 0 0.1660 0.0000 REMARK 3 28 3.4780 - 3.4360 0.93 503 0 0.1600 0.0000 REMARK 3 29 3.4360 - 3.3960 0.92 508 0 0.1690 0.0000 REMARK 3 30 3.3960 - 3.3580 0.94 510 0 0.1610 0.0000 REMARK 3 31 3.3580 - 3.3210 0.94 519 0 0.1820 0.0000 REMARK 3 32 3.3210 - 3.2860 0.94 513 0 0.1800 0.0000 REMARK 3 33 3.2860 - 3.2530 0.93 520 0 0.1920 0.0000 REMARK 3 34 3.2530 - 3.2210 0.93 493 0 0.1780 0.0000 REMARK 3 35 3.2210 - 3.1900 0.93 487 0 0.1900 0.0000 REMARK 3 36 3.1900 - 3.1600 0.92 514 0 0.1990 0.0000 REMARK 3 37 3.1600 - 3.1310 0.92 518 0 0.1950 0.0000 REMARK 3 38 3.1310 - 3.1030 0.92 506 0 0.2030 0.0000 REMARK 3 39 3.1030 - 3.0770 0.93 465 0 0.2000 0.0000 REMARK 3 40 3.0770 - 3.0510 0.93 528 0 0.1970 0.0000 REMARK 3 41 3.0510 - 3.0260 0.92 518 0 0.2140 0.0000 REMARK 3 42 3.0260 - 3.0020 0.92 495 0 0.2040 0.0000 REMARK 3 43 3.0020 - 2.9780 0.93 498 0 0.2100 0.0000 REMARK 3 44 2.9780 - 2.9550 0.91 496 0 0.2070 0.0000 REMARK 3 45 2.9550 - 2.9340 0.91 481 0 0.2030 0.0000 REMARK 3 46 2.9340 - 2.9120 0.91 514 0 0.1970 0.0000 REMARK 3 47 2.9120 - 2.8910 0.92 498 0 0.2260 0.0000 REMARK 3 48 2.8910 - 2.8710 0.92 480 0 0.2000 0.0000 REMARK 3 49 2.8710 - 2.8510 0.92 523 0 0.2150 0.0000 REMARK 3 50 2.8510 - 2.8320 0.91 485 0 0.1990 0.0000 REMARK 3 51 2.8320 - 2.8140 0.91 523 0 0.2010 0.0000 REMARK 3 52 2.8140 - 2.7960 0.92 499 0 0.2110 0.0000 REMARK 3 53 2.7960 - 2.7780 0.90 486 0 0.2070 0.0000 REMARK 3 54 2.7780 - 2.7610 0.91 463 0 0.1980 0.0000 REMARK 3 55 2.7610 - 2.7440 0.91 514 0 0.2050 0.0000 REMARK 3 56 2.7440 - 2.7270 0.90 505 0 0.2000 0.0000 REMARK 3 57 2.7270 - 2.7110 0.89 489 0 0.2150 0.0000 REMARK 3 58 2.7110 - 2.6960 0.91 494 0 0.1950 0.0000 REMARK 3 59 2.6960 - 2.6800 0.88 464 0 0.1930 0.0000 REMARK 3 60 2.6800 - 2.6650 0.93 482 0 0.2000 0.0000 REMARK 3 61 2.6650 - 2.6510 0.87 479 0 0.1990 0.0000 REMARK 3 62 2.6510 - 2.6360 0.87 501 0 0.1970 0.0000 REMARK 3 63 2.6360 - 2.6220 0.88 488 0 0.1950 0.0000 REMARK 3 64 2.6220 - 2.6090 0.89 472 0 0.1940 0.0000 REMARK 3 65 2.6090 - 2.5950 0.91 467 0 0.1920 0.0000 REMARK 3 66 2.5950 - 2.5820 0.90 499 0 0.1940 0.0000 REMARK 3 67 2.5820 - 2.5690 0.91 491 0 0.1920 0.0000 REMARK 3 68 2.5690 - 2.5560 0.91 508 0 0.2110 0.0000 REMARK 3 69 2.5560 - 2.5440 0.87 469 0 0.1800 0.0000 REMARK 3 70 2.5440 - 2.5320 0.87 470 0 0.1950 0.0000 REMARK 3 71 2.5320 - 2.5200 0.89 483 0 0.1900 0.0000 REMARK 3 72 2.5200 - 2.5080 0.90 488 0 0.1910 0.0000 REMARK 3 73 2.5080 - 2.4970 0.58 311 0 0.1830 0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 22.92 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.94900 REMARK 3 B22 (A**2) : -1.94900 REMARK 3 B33 (A**2) : 3.89800 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 NULL REMARK 3 ANGLE : 0.767 NULL REMARK 3 CHIRALITY : 0.059 NULL REMARK 3 PLANARITY : 0.004 NULL REMARK 3 DIHEDRAL : 13.136 NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ZEB COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-JAN-08. REMARK 100 THE RCSB ID CODE IS RCSB027863. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38453 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.78250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 42.89125 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 128.67375 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 243 CA C O CB CG CD CE REMARK 470 LYS A 243 NZ REMARK 470 LYS B 243 CA C O CB CG CD CE REMARK 470 LYS B 243 NZ REMARK 470 LYS C 243 CA C O CB CG CD CE REMARK 470 LYS C 243 NZ REMARK 470 LYS D 243 CA C O CB CG CD CE REMARK 470 LYS D 243 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN C 68 N - CA - C ANGL. DEV. = 16.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 35 145.93 -170.02 REMARK 500 TYR A 66 -29.36 82.27 REMARK 500 TYR A 84 -45.78 -136.15 REMARK 500 LYS A 102 92.47 -55.71 REMARK 500 SER A 104 -142.64 -95.91 REMARK 500 PHE A 143 64.21 65.70 REMARK 500 SER A 213 -59.56 -120.33 REMARK 500 GLN B 5 160.11 179.43 REMARK 500 TYR B 66 -14.11 84.57 REMARK 500 TYR B 84 -52.28 -128.89 REMARK 500 SER B 104 -151.55 -155.42 REMARK 500 PRO B 142 23.75 -79.20 REMARK 500 TRP B 214 -169.89 -164.70 REMARK 500 TYR C 66 -38.60 75.84 REMARK 500 TYR C 84 -50.35 -136.90 REMARK 500 SER C 104 -157.90 -126.50 REMARK 500 VAL C 107 93.77 -163.30 REMARK 500 SER C 116 11.73 162.55 REMARK 500 PHE C 119 78.24 63.80 REMARK 500 MET C 123 134.87 60.14 REMARK 500 ASN C 184 -152.92 -141.93 REMARK 500 SER C 213 -64.71 -123.31 REMARK 500 TYR D 66 -19.89 83.56 REMARK 500 GLN D 68 51.99 -117.86 REMARK 500 VAL D 103 99.85 -35.22 REMARK 500 PHE D 119 73.76 53.62 REMARK 500 PHE D 143 60.28 61.78 REMARK 500 ASN D 184 -159.60 -140.52 REMARK 500 SER D 213 -71.39 -120.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR C 67 GLN C 68 -115.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 11M A 244 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 11M B 244 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 11M D 244 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 11M C 244 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZEC RELATED DB: PDB DBREF 2ZEB A 1 243 UNP Q6B052 Q6B052_HUMAN 31 273 DBREF 2ZEB B 1 243 UNP Q6B052 Q6B052_HUMAN 31 273 DBREF 2ZEB C 1 243 UNP Q6B052 Q6B052_HUMAN 31 273 DBREF 2ZEB D 1 243 UNP Q6B052 Q6B052_HUMAN 31 273 SEQRES 1 A 243 ILE VAL GLY GLY GLN GLU ALA PRO ARG SER LYS TRP PRO SEQRES 2 A 243 TRP GLN VAL SER LEU ARG VAL HIS GLY PRO TYR TRP MET SEQRES 3 A 243 HIS PHE CYS GLY GLY SER LEU ILE HIS PRO GLN TRP VAL SEQRES 4 A 243 LEU THR ALA ALA HIS CYS VAL GLY PRO ASP VAL LYS ASP SEQRES 5 A 243 LEU ALA ALA LEU ARG VAL GLN LEU ARG GLU GLN HIS LEU SEQRES 6 A 243 TYR TYR GLN ASP GLN LEU LEU PRO VAL SER ARG ILE ILE SEQRES 7 A 243 VAL HIS PRO GLN PHE TYR THR ALA GLN ILE GLY ALA ASP SEQRES 8 A 243 ILE ALA LEU LEU GLU LEU GLU GLU PRO VAL LYS VAL SER SEQRES 9 A 243 SER HIS VAL HIS THR VAL THR LEU PRO PRO ALA SER GLU SEQRES 10 A 243 THR PHE PRO PRO GLY MET PRO CYS TRP VAL THR GLY TRP SEQRES 11 A 243 GLY ASP VAL ASP ASN ASP GLU ARG LEU PRO PRO PRO PHE SEQRES 12 A 243 PRO LEU LYS GLN VAL LYS VAL PRO ILE MET GLU ASN HIS SEQRES 13 A 243 ILE CYS ASP ALA LYS TYR HIS LEU GLY ALA TYR THR GLY SEQRES 14 A 243 ASP ASP VAL ARG ILE VAL ARG ASP ASP MET LEU CYS ALA SEQRES 15 A 243 GLY ASN THR ARG ARG ASP SER CYS GLN GLY ASP SER GLY SEQRES 16 A 243 GLY PRO LEU VAL CYS LYS VAL ASN GLY THR TRP LEU GLN SEQRES 17 A 243 ALA GLY VAL VAL SER TRP GLY GLU GLY CYS ALA GLN PRO SEQRES 18 A 243 ASN ARG PRO GLY ILE TYR THR ARG VAL THR TYR TYR LEU SEQRES 19 A 243 ASP TRP ILE HIS HIS TYR VAL PRO LYS SEQRES 1 B 243 ILE VAL GLY GLY GLN GLU ALA PRO ARG SER LYS TRP PRO SEQRES 2 B 243 TRP GLN VAL SER LEU ARG VAL HIS GLY PRO TYR TRP MET SEQRES 3 B 243 HIS PHE CYS GLY GLY SER LEU ILE HIS PRO GLN TRP VAL SEQRES 4 B 243 LEU THR ALA ALA HIS CYS VAL GLY PRO ASP VAL LYS ASP SEQRES 5 B 243 LEU ALA ALA LEU ARG VAL GLN LEU ARG GLU GLN HIS LEU SEQRES 6 B 243 TYR TYR GLN ASP GLN LEU LEU PRO VAL SER ARG ILE ILE SEQRES 7 B 243 VAL HIS PRO GLN PHE TYR THR ALA GLN ILE GLY ALA ASP SEQRES 8 B 243 ILE ALA LEU LEU GLU LEU GLU GLU PRO VAL LYS VAL SER SEQRES 9 B 243 SER HIS VAL HIS THR VAL THR LEU PRO PRO ALA SER GLU SEQRES 10 B 243 THR PHE PRO PRO GLY MET PRO CYS TRP VAL THR GLY TRP SEQRES 11 B 243 GLY ASP VAL ASP ASN ASP GLU ARG LEU PRO PRO PRO PHE SEQRES 12 B 243 PRO LEU LYS GLN VAL LYS VAL PRO ILE MET GLU ASN HIS SEQRES 13 B 243 ILE CYS ASP ALA LYS TYR HIS LEU GLY ALA TYR THR GLY SEQRES 14 B 243 ASP ASP VAL ARG ILE VAL ARG ASP ASP MET LEU CYS ALA SEQRES 15 B 243 GLY ASN THR ARG ARG ASP SER CYS GLN GLY ASP SER GLY SEQRES 16 B 243 GLY PRO LEU VAL CYS LYS VAL ASN GLY THR TRP LEU GLN SEQRES 17 B 243 ALA GLY VAL VAL SER TRP GLY GLU GLY CYS ALA GLN PRO SEQRES 18 B 243 ASN ARG PRO GLY ILE TYR THR ARG VAL THR TYR TYR LEU SEQRES 19 B 243 ASP TRP ILE HIS HIS TYR VAL PRO LYS SEQRES 1 C 243 ILE VAL GLY GLY GLN GLU ALA PRO ARG SER LYS TRP PRO SEQRES 2 C 243 TRP GLN VAL SER LEU ARG VAL HIS GLY PRO TYR TRP MET SEQRES 3 C 243 HIS PHE CYS GLY GLY SER LEU ILE HIS PRO GLN TRP VAL SEQRES 4 C 243 LEU THR ALA ALA HIS CYS VAL GLY PRO ASP VAL LYS ASP SEQRES 5 C 243 LEU ALA ALA LEU ARG VAL GLN LEU ARG GLU GLN HIS LEU SEQRES 6 C 243 TYR TYR GLN ASP GLN LEU LEU PRO VAL SER ARG ILE ILE SEQRES 7 C 243 VAL HIS PRO GLN PHE TYR THR ALA GLN ILE GLY ALA ASP SEQRES 8 C 243 ILE ALA LEU LEU GLU LEU GLU GLU PRO VAL LYS VAL SER SEQRES 9 C 243 SER HIS VAL HIS THR VAL THR LEU PRO PRO ALA SER GLU SEQRES 10 C 243 THR PHE PRO PRO GLY MET PRO CYS TRP VAL THR GLY TRP SEQRES 11 C 243 GLY ASP VAL ASP ASN ASP GLU ARG LEU PRO PRO PRO PHE SEQRES 12 C 243 PRO LEU LYS GLN VAL LYS VAL PRO ILE MET GLU ASN HIS SEQRES 13 C 243 ILE CYS ASP ALA LYS TYR HIS LEU GLY ALA TYR THR GLY SEQRES 14 C 243 ASP ASP VAL ARG ILE VAL ARG ASP ASP MET LEU CYS ALA SEQRES 15 C 243 GLY ASN THR ARG ARG ASP SER CYS GLN GLY ASP SER GLY SEQRES 16 C 243 GLY PRO LEU VAL CYS LYS VAL ASN GLY THR TRP LEU GLN SEQRES 17 C 243 ALA GLY VAL VAL SER TRP GLY GLU GLY CYS ALA GLN PRO SEQRES 18 C 243 ASN ARG PRO GLY ILE TYR THR ARG VAL THR TYR TYR LEU SEQRES 19 C 243 ASP TRP ILE HIS HIS TYR VAL PRO LYS SEQRES 1 D 243 ILE VAL GLY GLY GLN GLU ALA PRO ARG SER LYS TRP PRO SEQRES 2 D 243 TRP GLN VAL SER LEU ARG VAL HIS GLY PRO TYR TRP MET SEQRES 3 D 243 HIS PHE CYS GLY GLY SER LEU ILE HIS PRO GLN TRP VAL SEQRES 4 D 243 LEU THR ALA ALA HIS CYS VAL GLY PRO ASP VAL LYS ASP SEQRES 5 D 243 LEU ALA ALA LEU ARG VAL GLN LEU ARG GLU GLN HIS LEU SEQRES 6 D 243 TYR TYR GLN ASP GLN LEU LEU PRO VAL SER ARG ILE ILE SEQRES 7 D 243 VAL HIS PRO GLN PHE TYR THR ALA GLN ILE GLY ALA ASP SEQRES 8 D 243 ILE ALA LEU LEU GLU LEU GLU GLU PRO VAL LYS VAL SER SEQRES 9 D 243 SER HIS VAL HIS THR VAL THR LEU PRO PRO ALA SER GLU SEQRES 10 D 243 THR PHE PRO PRO GLY MET PRO CYS TRP VAL THR GLY TRP SEQRES 11 D 243 GLY ASP VAL ASP ASN ASP GLU ARG LEU PRO PRO PRO PHE SEQRES 12 D 243 PRO LEU LYS GLN VAL LYS VAL PRO ILE MET GLU ASN HIS SEQRES 13 D 243 ILE CYS ASP ALA LYS TYR HIS LEU GLY ALA TYR THR GLY SEQRES 14 D 243 ASP ASP VAL ARG ILE VAL ARG ASP ASP MET LEU CYS ALA SEQRES 15 D 243 GLY ASN THR ARG ARG ASP SER CYS GLN GLY ASP SER GLY SEQRES 16 D 243 GLY PRO LEU VAL CYS LYS VAL ASN GLY THR TRP LEU GLN SEQRES 17 D 243 ALA GLY VAL VAL SER TRP GLY GLU GLY CYS ALA GLN PRO SEQRES 18 D 243 ASN ARG PRO GLY ILE TYR THR ARG VAL THR TYR TYR LEU SEQRES 19 D 243 ASP TRP ILE HIS HIS TYR VAL PRO LYS HET 11M A 244 29 HET 11M B 244 29 HET 11M C 244 29 HET 11M D 244 29 HETNAM 11M 1-(1'-{[3-(METHYLSULFANYL)-2-BENZOTHIOPHEN-1- HETNAM 2 11M YL]CARBONYL}SPIRO[1-BENZOFURAN-3,4'-PIPERIDIN]-5-YL) HETNAM 3 11M METHANAMINE FORMUL 5 11M 4(C23 H24 N2 O2 S2) FORMUL 9 HOH *299(H2 O) HELIX 1 1 ALA A 42 GLY A 47 1 6 HELIX 2 2 ASP A 52 ALA A 54 5 3 HELIX 3 3 GLU A 154 LEU A 164 1 11 HELIX 4 4 TYR A 233 HIS A 239 1 7 HELIX 5 5 ALA B 42 VAL B 46 5 5 HELIX 6 6 ASP B 52 ALA B 54 5 3 HELIX 7 7 GLU B 154 LEU B 164 1 11 HELIX 8 8 TYR B 233 HIS B 239 1 7 HELIX 9 9 ALA C 42 VAL C 46 5 5 HELIX 10 10 ASP C 52 ALA C 54 5 3 HELIX 11 11 GLU C 154 LEU C 164 1 11 HELIX 12 12 TYR C 233 HIS C 239 1 7 HELIX 13 13 ALA D 42 VAL D 46 5 5 HELIX 14 14 ASP D 52 ALA D 54 5 3 HELIX 15 15 GLU D 154 LEU D 164 1 11 HELIX 16 16 TYR D 233 VAL D 241 1 9 SHEET 1 A 8 GLN A 5 GLU A 6 0 SHEET 2 A 8 LYS A 146 LYS A 149 -1 O GLN A 147 N GLN A 5 SHEET 3 A 8 CYS A 125 GLY A 129 -1 N VAL A 127 O VAL A 148 SHEET 4 A 8 PRO A 197 VAL A 202 -1 O VAL A 199 N TRP A 126 SHEET 5 A 8 THR A 205 TRP A 214 -1 O THR A 205 N VAL A 202 SHEET 6 A 8 GLY A 225 ARG A 229 -1 O THR A 228 N VAL A 211 SHEET 7 A 8 MET A 179 ALA A 182 -1 N LEU A 180 O TYR A 227 SHEET 8 A 8 ILE A 152 MET A 153 -1 N MET A 153 O CYS A 181 SHEET 1 B 6 LEU A 56 GLN A 59 0 SHEET 2 B 6 GLN A 15 VAL A 20 -1 N SER A 17 O GLN A 59 SHEET 3 B 6 MET A 26 HIS A 35 -1 O CYS A 29 N LEU A 18 SHEET 4 B 6 TRP A 38 THR A 41 -1 O LEU A 40 N SER A 32 SHEET 5 B 6 ALA A 93 LEU A 97 -1 O LEU A 95 N VAL A 39 SHEET 6 B 6 VAL A 74 VAL A 79 -1 N ILE A 78 O LEU A 94 SHEET 1 C 8 GLN B 5 GLU B 6 0 SHEET 2 C 8 LYS B 146 LYS B 149 -1 O GLN B 147 N GLN B 5 SHEET 3 C 8 CYS B 125 GLY B 129 -1 N VAL B 127 O VAL B 148 SHEET 4 C 8 PRO B 197 VAL B 202 -1 O VAL B 199 N TRP B 126 SHEET 5 C 8 THR B 205 TRP B 214 -1 O THR B 205 N VAL B 202 SHEET 6 C 8 GLY B 225 ARG B 229 -1 O THR B 228 N VAL B 211 SHEET 7 C 8 MET B 179 ALA B 182 -1 N LEU B 180 O TYR B 227 SHEET 8 C 8 ILE B 152 MET B 153 -1 N MET B 153 O CYS B 181 SHEET 1 D 7 GLN B 15 VAL B 20 0 SHEET 2 D 7 MET B 26 HIS B 35 -1 O CYS B 29 N LEU B 18 SHEET 3 D 7 TRP B 38 THR B 41 -1 O LEU B 40 N SER B 32 SHEET 4 D 7 ALA B 93 LEU B 97 -1 O LEU B 95 N VAL B 39 SHEET 5 D 7 LEU B 72 VAL B 79 -1 N ARG B 76 O GLU B 96 SHEET 6 D 7 LEU B 56 GLN B 59 -1 N VAL B 58 O LEU B 72 SHEET 7 D 7 GLN B 15 VAL B 20 -1 N ARG B 19 O ARG B 57 SHEET 1 E 8 GLN C 5 GLU C 6 0 SHEET 2 E 8 LYS C 146 LYS C 149 -1 O GLN C 147 N GLN C 5 SHEET 3 E 8 CYS C 125 GLY C 129 -1 N VAL C 127 O VAL C 148 SHEET 4 E 8 PRO C 197 LYS C 201 -1 O VAL C 199 N TRP C 126 SHEET 5 E 8 TRP C 206 TRP C 214 -1 O LEU C 207 N CYS C 200 SHEET 6 E 8 GLY C 225 ARG C 229 -1 O ILE C 226 N TRP C 214 SHEET 7 E 8 MET C 179 ALA C 182 -1 N LEU C 180 O TYR C 227 SHEET 8 E 8 ILE C 152 MET C 153 -1 N MET C 153 O CYS C 181 SHEET 1 F 6 LEU C 56 LEU C 60 0 SHEET 2 F 6 GLN C 15 VAL C 20 -1 N SER C 17 O GLN C 59 SHEET 3 F 6 MET C 26 HIS C 35 -1 O CYS C 29 N LEU C 18 SHEET 4 F 6 TRP C 38 THR C 41 -1 O LEU C 40 N SER C 32 SHEET 5 F 6 ALA C 93 LEU C 97 -1 O LEU C 95 N VAL C 39 SHEET 6 F 6 VAL C 74 VAL C 79 -1 N SER C 75 O GLU C 96 SHEET 1 G 8 GLN D 5 GLU D 6 0 SHEET 2 G 8 LYS D 146 LYS D 149 -1 O GLN D 147 N GLN D 5 SHEET 3 G 8 CYS D 125 GLY D 129 -1 N VAL D 127 O VAL D 148 SHEET 4 G 8 PRO D 197 VAL D 202 -1 O VAL D 199 N TRP D 126 SHEET 5 G 8 THR D 205 TRP D 214 -1 O THR D 205 N VAL D 202 SHEET 6 G 8 GLY D 225 ARG D 229 -1 O THR D 228 N VAL D 211 SHEET 7 G 8 MET D 179 ALA D 182 -1 N LEU D 180 O TYR D 227 SHEET 8 G 8 ILE D 152 MET D 153 -1 N MET D 153 O CYS D 181 SHEET 1 H 7 GLN D 15 VAL D 20 0 SHEET 2 H 7 MET D 26 HIS D 35 -1 O CYS D 29 N LEU D 18 SHEET 3 H 7 TRP D 38 THR D 41 -1 O LEU D 40 N SER D 32 SHEET 4 H 7 ALA D 93 LEU D 97 -1 O ALA D 93 N THR D 41 SHEET 5 H 7 LEU D 72 VAL D 79 -1 N ILE D 78 O LEU D 94 SHEET 6 H 7 LEU D 56 GLN D 59 -1 N VAL D 58 O LEU D 72 SHEET 7 H 7 GLN D 15 VAL D 20 -1 N ARG D 19 O ARG D 57 SSBOND 1 CYS A 29 CYS A 45 1555 1555 2.06 SSBOND 2 CYS A 125 CYS A 200 1555 1555 2.04 SSBOND 3 CYS A 158 CYS A 181 1555 1555 2.05 SSBOND 4 CYS A 190 CYS A 218 1555 1555 2.05 SSBOND 5 CYS B 29 CYS B 45 1555 1555 2.05 SSBOND 6 CYS B 125 CYS B 200 1555 1555 2.04 SSBOND 7 CYS B 158 CYS B 181 1555 1555 2.03 SSBOND 8 CYS B 190 CYS B 218 1555 1555 2.04 SSBOND 9 CYS C 29 CYS C 45 1555 1555 2.05 SSBOND 10 CYS C 125 CYS C 200 1555 1555 2.03 SSBOND 11 CYS C 158 CYS C 181 1555 1555 2.04 SSBOND 12 CYS C 190 CYS C 218 1555 1555 2.06 SSBOND 13 CYS D 29 CYS D 45 1555 1555 2.07 SSBOND 14 CYS D 125 CYS D 200 1555 1555 2.04 SSBOND 15 CYS D 158 CYS D 181 1555 1555 2.04 SSBOND 16 CYS D 190 CYS D 218 1555 1555 2.05 CISPEP 1 GLY A 47 PRO A 48 0 6.49 CISPEP 2 PRO A 141 PRO A 142 0 2.13 CISPEP 3 GLY B 47 PRO B 48 0 4.16 CISPEP 4 PRO B 141 PRO B 142 0 4.73 CISPEP 5 GLY C 47 PRO C 48 0 4.70 CISPEP 6 PRO C 141 PRO C 142 0 1.43 CISPEP 7 GLY D 47 PRO D 48 0 7.99 CISPEP 8 PRO D 141 PRO D 142 0 7.04 SITE 1 AC1 12 GLN A 87 ASP A 188 SER A 189 CYS A 190 SITE 2 AC1 12 GLN A 191 SER A 194 TRP A 214 GLY A 215 SITE 3 AC1 12 GLU A 216 GLY A 217 GLY A 225 TYR C 84 SITE 1 AC2 15 GLN B 87 ASP B 188 SER B 189 CYS B 190 SITE 2 AC2 15 GLN B 191 SER B 194 TRP B 214 GLY B 215 SITE 3 AC2 15 GLU B 216 GLY B 217 GLY B 225 HOH B 290 SITE 4 AC2 15 HOH B 297 TYR D 84 THR D 85 SITE 1 AC3 12 TYR B 84 THR B 85 GLN D 87 ASP D 188 SITE 2 AC3 12 SER D 189 CYS D 190 GLN D 191 TRP D 214 SITE 3 AC3 12 GLY D 215 GLU D 216 GLY D 217 HOH D 302 SITE 1 AC4 13 TYR A 84 THR A 85 GLN C 87 ASP C 188 SITE 2 AC4 13 SER C 189 CYS C 190 GLN C 191 SER C 194 SITE 3 AC4 13 TRP C 214 GLY C 215 GLU C 216 GLY C 217 SITE 4 AC4 13 HOH C 303 CRYST1 82.670 82.670 171.565 90.00 90.00 90.00 P 41 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012096 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012096 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005829 0.00000