PDB Short entry for 2ZKM HEADER HYDROLASE 26-MAR-08 2ZKM TITLE CRYSTAL STRUCTURE OF PHOSPHOLIPASE C BETA 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 1-PHOSPHATIDYLINOSITOL-4,5-BISPHOSPHATE PHOSPHODIESTERASE COMPND 3 BETA-2; COMPND 4 CHAIN: X; COMPND 5 FRAGMENT: RESIDUES 1-799 (PH-C2 DOMAINS); COMPND 6 SYNONYM: PHOSPHOINOSITIDE PHOSPHOLIPASE C, PHOSPHOLIPASE C- BETA-2, COMPND 7 PLC-BETA-2; COMPND 8 EC: 3.1.4.11; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PLC BETA 2; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PFASTBACHT C KEYWDS PHOSPHOLIPASE C, PHOSPHOINOSITIDE PHOSPHOLIPASE, PLC-BETA-2, CALCIUM, KEYWDS 2 COILED COIL, HYDROLASE, LIPID DEGRADATION, METAL-BINDING, TRANSDUCER EXPDTA X-RAY DIFFRACTION AUTHOR S.N.HICKS,M.R.JEZYK,S.GERSHBERG,J.P.SEIFERT,T.K.HARDEN,J.SONDEK REVDAT 5 01-NOV-23 2ZKM 1 REMARK LINK REVDAT 4 11-OCT-17 2ZKM 1 REMARK REVDAT 3 24-FEB-09 2ZKM 1 VERSN REVDAT 2 16-SEP-08 2ZKM 1 JRNL REVDAT 1 12-AUG-08 2ZKM 0 JRNL AUTH S.N.HICKS,M.R.JEZYK,S.GERSHBURG,J.P.SEIFERT,T.K.HARDEN, JRNL AUTH 2 J.SONDEK JRNL TITL GENERAL AND VERSATILE AUTOINHIBITION OF PLC ISOZYMES JRNL REF MOL.CELL V. 31 383 2008 JRNL REFN ISSN 1097-2765 JRNL PMID 18691970 JRNL DOI 10.1016/J.MOLCEL.2008.06.018 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.R.JEZYK,J.T.SNYDER,S.GERSHBERG,D.K.WORTHYLAKE,T.K.HARDEN, REMARK 1 AUTH 2 J.SONDEK REMARK 1 TITL CRYSTAL STRUCTURE OF RAC1 BOUND TO ITS EFFECTOR REMARK 1 TITL 2 PHOSPHOLIPASE C-BETA2 REMARK 1 REF NAT.STRUCT.MOL.BIOL. V. 13 1135 2006 REMARK 1 REFN ISSN 1545-9993 REMARK 1 PMID 17115053 REMARK 1 DOI 10.1038/NSMB1175 REMARK 2 REMARK 2 RESOLUTION. 1.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 129234 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6470 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.62 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.66 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8605 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE SET COUNT : 466 REMARK 3 BIN FREE R VALUE : 0.2300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5704 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 692 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.083 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.080 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.045 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.235 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5843 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7894 ; 0.991 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 703 ; 5.611 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 266 ;33.289 ;24.361 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1054 ;11.155 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ; 9.915 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 859 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4392 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2673 ; 0.180 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4026 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 569 ; 0.081 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.071 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 33 ; 0.156 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.106 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3662 ; 0.509 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5770 ; 0.845 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2471 ; 1.295 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2124 ; 1.986 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ZKM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000028090. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-OCT-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0712 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI (220) REMARK 200 CRYOGENICALLY COOLED REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 129374 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.620 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.20700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2FJU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16%(V/V) ISOPROPANOL, 2%(V/V) DIOXANE, REMARK 280 100MM TRIS , PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.20200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.72350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.18950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.72350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.20200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.18950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET X 1 REMARK 465 SER X 2 REMARK 465 LEU X 3 REMARK 465 LEU X 4 REMARK 465 ASN X 5 REMARK 465 PRO X 6 REMARK 465 VAL X 7 REMARK 465 LEU X 8 REMARK 465 LEU X 9 REMARK 465 PRO X 10 REMARK 465 SER X 227 REMARK 465 TYR X 228 REMARK 465 HIS X 229 REMARK 465 ALA X 230 REMARK 465 LYS X 231 REMARK 465 ALA X 232 REMARK 465 LYS X 233 REMARK 465 PRO X 234 REMARK 465 ASP X 251 REMARK 465 SER X 252 REMARK 465 ARG X 253 REMARK 465 LEU X 254 REMARK 465 ASN X 255 REMARK 465 SER X 256 REMARK 465 LEU X 257 REMARK 465 LEU X 258 REMARK 465 PHE X 259 REMARK 465 PRO X 260 REMARK 465 PRO X 261 REMARK 465 ALA X 262 REMARK 465 ARG X 263 REMARK 465 PRO X 264 REMARK 465 ASP X 265 REMARK 465 GLY X 278 REMARK 465 ILE X 279 REMARK 465 ASN X 280 REMARK 465 ALA X 281 REMARK 465 GLN X 282 REMARK 465 ARG X 283 REMARK 465 GLY X 284 REMARK 465 GLN X 285 REMARK 465 GLN X 466 REMARK 465 PHE X 467 REMARK 465 SER X 468 REMARK 465 GLY X 469 REMARK 465 PRO X 470 REMARK 465 THR X 471 REMARK 465 SER X 472 REMARK 465 SER X 473 REMARK 465 SER X 474 REMARK 465 LYS X 475 REMARK 465 ASP X 476 REMARK 465 THR X 477 REMARK 465 GLY X 478 REMARK 465 GLY X 479 REMARK 465 GLU X 480 REMARK 465 ALA X 481 REMARK 465 GLU X 482 REMARK 465 GLY X 483 REMARK 465 SER X 484 REMARK 465 SER X 485 REMARK 465 PRO X 486 REMARK 465 PRO X 487 REMARK 465 SER X 488 REMARK 465 ALA X 489 REMARK 465 PRO X 490 REMARK 465 ALA X 491 REMARK 465 VAL X 492 REMARK 465 TRP X 493 REMARK 465 ALA X 494 REMARK 465 GLY X 495 REMARK 465 GLU X 496 REMARK 465 GLU X 497 REMARK 465 GLY X 498 REMARK 465 THR X 499 REMARK 465 GLU X 500 REMARK 465 LEU X 501 REMARK 465 GLU X 502 REMARK 465 GLU X 503 REMARK 465 GLU X 504 REMARK 465 GLU X 505 REMARK 465 VAL X 506 REMARK 465 GLU X 507 REMARK 465 GLU X 508 REMARK 465 GLU X 509 REMARK 465 GLU X 510 REMARK 465 GLU X 511 REMARK 465 GLU X 512 REMARK 465 GLU X 513 REMARK 465 SER X 514 REMARK 465 GLY X 515 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP X 88 CG OD1 OD2 REMARK 470 PHE X 89 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PRO X 90 CG CD REMARK 470 ASP X 91 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR X 31 17.28 58.48 REMARK 500 LYS X 54 -12.68 83.56 REMARK 500 ASP X 88 58.07 -101.86 REMARK 500 ASN X 121 -16.30 78.17 REMARK 500 HIS X 311 -8.90 -148.88 REMARK 500 ASN X 328 60.34 37.45 REMARK 500 ALA X 333 -122.87 -145.38 REMARK 500 ASP X 528 -97.11 -125.45 REMARK 500 ASN X 547 -80.50 -139.33 REMARK 500 VAL X 555 -60.24 -108.19 REMARK 500 ALA X 584 50.24 -143.23 REMARK 500 ARG X 658 -56.81 -122.16 REMARK 500 ASN X 726 55.81 -148.04 REMARK 500 LYS X 730 77.17 -119.98 REMARK 500 ASN X 756 41.88 76.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA X 800 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN X 328 OD1 REMARK 620 2 GLU X 357 OE2 90.7 REMARK 620 3 ASP X 359 OD1 92.6 81.5 REMARK 620 4 ASP X 359 OD2 79.1 130.9 51.7 REMARK 620 5 GLU X 408 OE1 176.5 91.9 85.4 97.4 REMARK 620 6 HOH X 842 O 86.5 84.0 165.5 141.7 96.1 REMARK 620 7 HOH X 844 O 91.1 152.0 126.4 76.8 87.7 68.2 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA X 800 DBREF 2ZKM X 1 799 UNP Q00722 PLCB2_HUMAN 1 799 SEQRES 1 X 799 MET SER LEU LEU ASN PRO VAL LEU LEU PRO PRO LYS VAL SEQRES 2 X 799 LYS ALA TYR LEU SER GLN GLY GLU ARG PHE ILE LYS TRP SEQRES 3 X 799 ASP ASP GLU THR THR VAL ALA SER PRO VAL ILE LEU ARG SEQRES 4 X 799 VAL ASP PRO LYS GLY TYR TYR LEU TYR TRP THR TYR GLN SEQRES 5 X 799 SER LYS GLU MET GLU PHE LEU ASP ILE THR SER ILE ARG SEQRES 6 X 799 ASP THR ARG PHE GLY LYS PHE ALA LYS MET PRO LYS SER SEQRES 7 X 799 GLN LYS LEU ARG ASP VAL PHE ASN MET ASP PHE PRO ASP SEQRES 8 X 799 ASN SER PHE LEU LEU LYS THR LEU THR VAL VAL SER GLY SEQRES 9 X 799 PRO ASP MET VAL ASP LEU THR PHE HIS ASN PHE VAL SER SEQRES 10 X 799 TYR LYS GLU ASN VAL GLY LYS ALA TRP ALA GLU ASP VAL SEQRES 11 X 799 LEU ALA LEU VAL LYS HIS PRO LEU THR ALA ASN ALA SER SEQRES 12 X 799 ARG SER THR PHE LEU ASP LYS ILE LEU VAL LYS LEU LYS SEQRES 13 X 799 MET GLN LEU ASN SER GLU GLY LYS ILE PRO VAL LYS ASN SEQRES 14 X 799 PHE PHE GLN MET PHE PRO ALA ASP ARG LYS ARG VAL GLU SEQRES 15 X 799 ALA ALA LEU SER ALA CYS HIS LEU PRO LYS GLY LYS ASN SEQRES 16 X 799 ASP ALA ILE ASN PRO GLU ASP PHE PRO GLU PRO VAL TYR SEQRES 17 X 799 LYS SER PHE LEU MET SER LEU CYS PRO ARG PRO GLU ILE SEQRES 18 X 799 ASP GLU ILE PHE THR SER TYR HIS ALA LYS ALA LYS PRO SEQRES 19 X 799 TYR MET THR LYS GLU HIS LEU THR LYS PHE ILE ASN GLN SEQRES 20 X 799 LYS GLN ARG ASP SER ARG LEU ASN SER LEU LEU PHE PRO SEQRES 21 X 799 PRO ALA ARG PRO ASP GLN VAL GLN GLY LEU ILE ASP LYS SEQRES 22 X 799 TYR GLU PRO SER GLY ILE ASN ALA GLN ARG GLY GLN LEU SEQRES 23 X 799 SER PRO GLU GLY MET VAL TRP PHE LEU CYS GLY PRO GLU SEQRES 24 X 799 ASN SER VAL LEU ALA GLN ASP LYS LEU LEU LEU HIS HIS SEQRES 25 X 799 ASP MET THR GLN PRO LEU ASN HIS TYR PHE ILE ASN SER SEQRES 26 X 799 SER HIS ASN THR TYR LEU THR ALA GLY GLN PHE SER GLY SEQRES 27 X 799 LEU SER SER ALA GLU MET TYR ARG GLN VAL LEU LEU SER SEQRES 28 X 799 GLY CYS ARG CYS VAL GLU LEU ASP CYS TRP LYS GLY LYS SEQRES 29 X 799 PRO PRO ASP GLU GLU PRO ILE ILE THR HIS GLY PHE THR SEQRES 30 X 799 MET THR THR ASP ILE PHE PHE LYS GLU ALA ILE GLU ALA SEQRES 31 X 799 ILE ALA GLU SER ALA PHE LYS THR SER PRO TYR PRO ILE SEQRES 32 X 799 ILE LEU SER PHE GLU ASN HIS VAL ASP SER PRO ARG GLN SEQRES 33 X 799 GLN ALA LYS MET ALA GLU TYR CYS ARG THR ILE PHE GLY SEQRES 34 X 799 ASP MET LEU LEU THR GLU PRO LEU GLU LYS PHE PRO LEU SEQRES 35 X 799 LYS PRO GLY VAL PRO LEU PRO SER PRO GLU ASP LEU ARG SEQRES 36 X 799 GLY LYS ILE LEU ILE LYS ASN LYS LYS ASN GLN PHE SER SEQRES 37 X 799 GLY PRO THR SER SER SER LYS ASP THR GLY GLY GLU ALA SEQRES 38 X 799 GLU GLY SER SER PRO PRO SER ALA PRO ALA VAL TRP ALA SEQRES 39 X 799 GLY GLU GLU GLY THR GLU LEU GLU GLU GLU GLU VAL GLU SEQRES 40 X 799 GLU GLU GLU GLU GLU GLU SER GLY ASN LEU ASP GLU GLU SEQRES 41 X 799 GLU ILE LYS LYS MET GLN SER ASP GLU GLY THR ALA GLY SEQRES 42 X 799 LEU GLU VAL THR ALA TYR GLU GLU MET SER SER LEU VAL SEQRES 43 X 799 ASN TYR ILE GLN PRO THR LYS PHE VAL SER PHE GLU PHE SEQRES 44 X 799 SER ALA GLN LYS ASN ARG SER TYR VAL ILE SER SER PHE SEQRES 45 X 799 THR GLU LEU LYS ALA TYR ASP LEU LEU SER LYS ALA SER SEQRES 46 X 799 VAL GLN PHE VAL ASP TYR ASN LYS ARG GLN MET SER ARG SEQRES 47 X 799 ILE TYR PRO LYS GLY THR ARG MET ASP SER SER ASN TYR SEQRES 48 X 799 MET PRO GLN MET PHE TRP ASN ALA GLY CYS GLN MET VAL SEQRES 49 X 799 ALA LEU ASN PHE GLN THR MET ASP LEU PRO MET GLN GLN SEQRES 50 X 799 ASN MET ALA VAL PHE GLU PHE ASN GLY GLN SER GLY TYR SEQRES 51 X 799 LEU LEU LYS HIS GLU PHE MET ARG ARG PRO ASP LYS GLN SEQRES 52 X 799 PHE ASN PRO PHE SER VAL ASP ARG ILE ASP VAL VAL VAL SEQRES 53 X 799 ALA THR THR LEU SER ILE THR VAL ILE SER GLY GLN PHE SEQRES 54 X 799 LEU SER GLU ARG SER VAL ARG THR TYR VAL GLU VAL GLU SEQRES 55 X 799 LEU PHE GLY LEU PRO GLY ASP PRO LYS ARG ARG TYR ARG SEQRES 56 X 799 THR LYS LEU SER PRO SER THR ASN SER ILE ASN PRO VAL SEQRES 57 X 799 TRP LYS GLU GLU PRO PHE VAL PHE GLU LYS ILE LEU MET SEQRES 58 X 799 PRO GLU LEU ALA SER LEU ARG VAL ALA VAL MET GLU GLU SEQRES 59 X 799 GLY ASN LYS PHE LEU GLY HIS ARG ILE ILE PRO ILE ASN SEQRES 60 X 799 ALA LEU ASN SER GLY TYR HIS HIS LEU CYS LEU HIS SER SEQRES 61 X 799 GLU SER ASN MET PRO LEU THR MET PRO ALA LEU PHE ILE SEQRES 62 X 799 PHE LEU GLU MET LYS ASP HET CA X 800 1 HETNAM CA CALCIUM ION FORMUL 2 CA CA 2+ FORMUL 3 HOH *692(H2 O) HELIX 1 1 LYS X 14 GLY X 20 1 7 HELIX 2 2 LYS X 71 ALA X 73 5 3 HELIX 3 3 SER X 78 PHE X 85 1 8 HELIX 4 4 SER X 93 LEU X 96 5 4 HELIX 5 5 ASN X 121 HIS X 136 1 16 HELIX 6 6 LEU X 138 ALA X 142 5 5 HELIX 7 7 SER X 143 GLN X 158 1 16 HELIX 8 8 VAL X 167 PHE X 174 1 8 HELIX 9 9 ASP X 177 CYS X 188 1 12 HELIX 10 10 ASN X 199 PHE X 203 5 5 HELIX 11 11 PRO X 204 CYS X 216 1 13 HELIX 12 12 ARG X 218 GLU X 223 1 6 HELIX 13 13 THR X 237 LYS X 248 1 12 HELIX 14 14 GLN X 266 GLU X 275 1 10 HELIX 15 15 SER X 287 GLY X 297 1 11 HELIX 16 16 ALA X 304 LEU X 309 5 6 HELIX 17 17 PRO X 317 ASN X 319 5 3 HELIX 18 18 ALA X 342 SER X 351 1 10 HELIX 19 19 PHE X 384 ALA X 395 1 12 HELIX 20 20 SER X 413 GLY X 429 1 17 HELIX 21 21 ASP X 430 LEU X 432 5 3 HELIX 22 22 ASP X 518 ASP X 528 1 11 HELIX 23 23 GLU X 529 GLU X 535 5 7 HELIX 24 24 TYR X 539 SER X 544 1 6 HELIX 25 25 SER X 556 ASN X 564 1 9 HELIX 26 26 GLU X 574 ALA X 584 1 11 HELIX 27 27 ALA X 584 GLN X 595 1 12 HELIX 28 28 PRO X 613 ALA X 619 1 7 HELIX 29 29 ASP X 632 PHE X 642 1 11 HELIX 30 30 GLU X 643 SER X 648 5 6 HELIX 31 31 HIS X 654 ARG X 658 5 5 HELIX 32 32 MET X 741 LEU X 744 5 4 HELIX 33 33 ASN X 767 LEU X 769 5 3 SHEET 1 A 7 MET X 56 ASP X 60 0 SHEET 2 A 7 TYR X 46 TYR X 51 -1 N LEU X 47 O LEU X 59 SHEET 3 A 7 ALA X 33 VAL X 40 -1 N ARG X 39 O TYR X 48 SHEET 4 A 7 GLU X 21 TRP X 26 -1 N PHE X 23 O VAL X 36 SHEET 5 A 7 THR X 111 SER X 117 -1 O VAL X 116 N ILE X 24 SHEET 6 A 7 THR X 98 SER X 103 -1 N LEU X 99 O PHE X 115 SHEET 7 A 7 ILE X 64 PHE X 69 -1 N ARG X 65 O VAL X 102 SHEET 1 B 2 ILE X 165 PRO X 166 0 SHEET 2 B 2 ALA X 197 ILE X 198 -1 O ILE X 198 N ILE X 165 SHEET 1 C 2 TYR X 321 ILE X 323 0 SHEET 2 C 2 TYR X 650 LEU X 652 -1 O LEU X 651 N PHE X 322 SHEET 1 D 5 ILE X 382 PHE X 383 0 SHEET 2 D 5 ILE X 371 ILE X 372 -1 N ILE X 372 O ILE X 382 SHEET 3 D 5 CYS X 355 TRP X 361 -1 N TRP X 361 O ILE X 371 SHEET 4 D 5 ILE X 403 ASN X 409 1 O SER X 406 N VAL X 356 SHEET 5 D 5 ILE X 458 LYS X 461 1 O LEU X 459 N LEU X 405 SHEET 1 E 4 GLN X 550 PRO X 551 0 SHEET 2 E 4 VAL X 568 THR X 573 1 O ILE X 569 N GLN X 550 SHEET 3 E 4 MET X 596 TYR X 600 1 O ARG X 598 N PHE X 572 SHEET 4 E 4 MET X 623 VAL X 624 1 O MET X 623 N ILE X 599 SHEET 1 F 4 PHE X 734 ILE X 739 0 SHEET 2 F 4 THR X 678 GLN X 688 -1 N LEU X 680 O PHE X 736 SHEET 3 F 4 PRO X 785 LYS X 798 -1 O GLU X 796 N SER X 681 SHEET 4 F 4 GLY X 772 HIS X 779 -1 N GLY X 772 O LEU X 795 SHEET 1 G 4 TYR X 714 ARG X 715 0 SHEET 2 G 4 THR X 697 PHE X 704 -1 N VAL X 701 O TYR X 714 SHEET 3 G 4 SER X 746 GLU X 753 -1 O ARG X 748 N GLU X 702 SHEET 4 G 4 LYS X 757 PRO X 765 -1 O GLY X 760 N VAL X 751 LINK OD1 ASN X 328 CA CA X 800 1555 1555 2.33 LINK OE2 GLU X 357 CA CA X 800 1555 1555 2.37 LINK OD1 ASP X 359 CA CA X 800 1555 1555 2.49 LINK OD2 ASP X 359 CA CA X 800 1555 1555 2.53 LINK OE1 GLU X 408 CA CA X 800 1555 1555 2.35 LINK CA CA X 800 O HOH X 842 1555 1555 2.47 LINK CA CA X 800 O HOH X 844 1555 1555 2.54 CISPEP 1 PRO X 365 PRO X 366 0 7.44 SITE 1 AC1 6 ASN X 328 GLU X 357 ASP X 359 GLU X 408 SITE 2 AC1 6 HOH X 842 HOH X 844 CRYST1 80.404 86.379 147.447 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012437 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011577 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006782 0.00000