PDB Short entry for 2ZVV HEADER DNA BINDING PROTEIN 21-NOV-08 2ZVV TITLE CRYSTAL STRUCTURE OF PROLIFERATING CELLULAR NUCLEAR ANTIGEN 1 AND TITLE 2 SHORT PEPTIDE FROM HUMAN P21 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROLIFERATING CELLULAR NUCLEAR ANTIGEN 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PCNA 1; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CYCLIN-DEPENDENT KINASE INHIBITOR 1; COMPND 8 CHAIN: Y, X; COMPND 9 FRAGMENT: UNP RESIDUES 139-160; COMPND 10 SYNONYM: P21, CDK-INTERACTING PROTEIN 1, MELANOMA DIFFERENTIATION- COMPND 11 ASSOCIATED PROTEIN 6, MDA-6; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS,THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: A SYNTHETIC FRAGMENT 139-160 OF THE HUMAN P21/WAF1 KEYWDS PROTEIN-PEPTIDE COMPLEX, DNA REPLICATION, DNA-BINDING, NUCLEUS, DNA KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR W.STRZALKA,T.OYAMA,K.TORI,K.MORIKAWA REVDAT 2 01-NOV-23 2ZVV 1 REMARK SEQADV REVDAT 1 02-JUN-09 2ZVV 0 JRNL AUTH W.STRZALKA,T.OYAMA,K.TORI,K.MORIKAWA JRNL TITL CRYSTAL STRUCTURES OF THE ARABIDOPSIS THALIANA PROLIFERATING JRNL TITL 2 CELL NUCLEAR ANTIGEN 1 AND 2 PROTEINS COMPLEXED WITH THE JRNL TITL 3 HUMAN P21 C-TERMINAL SEGMENT JRNL REF PROTEIN SCI. V. 18 1072 2009 JRNL REFN ISSN 0961-8368 JRNL PMID 19388052 JRNL DOI 10.1002/PRO.117 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 193314.590 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 63800 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3242 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 9651 REMARK 3 BIN R VALUE (WORKING SET) : 0.2450 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 512 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.012 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4158 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 214 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.17000 REMARK 3 B22 (A**2) : 1.17000 REMARK 3 B33 (A**2) : -2.34000 REMARK 3 B12 (A**2) : 1.81000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM SIGMAA (A) : 0.15 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.19 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 27.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.190 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.330 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.180 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.170 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.300 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 42.53 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ZVV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1000028490. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : FIXED EXIT SI 111 DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65251 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.20 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.20 REMARK 200 R MERGE FOR SHELL (I) : 0.38100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1AXC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM CITRIC ACID, 1.8M AMMONIUM REMARK 280 SALFATE, PH 4.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 55.50500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 32.04583 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 134.63433 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 55.50500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 32.04583 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 134.63433 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 55.50500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 32.04583 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 134.63433 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 55.50500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 32.04583 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 134.63433 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 55.50500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 32.04583 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 134.63433 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 55.50500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 32.04583 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 134.63433 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 64.09165 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 269.26867 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 64.09165 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 269.26867 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 64.09165 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 269.26867 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 64.09165 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 269.26867 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 64.09165 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 269.26867 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 64.09165 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 269.26867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -90.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 166.51500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 96.13748 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 192.27496 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -97.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, Y REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 55.50500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 96.13748 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -55.50500 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 96.13748 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 GLU A 256 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 GLY Y 139 REMARK 465 ARG Y 140 REMARK 465 LYS Y 141 REMARK 465 PHE Y 159 REMARK 465 SER Y 160 REMARK 465 GLY X 139 REMARK 465 ARG X 140 REMARK 465 LYS X 141 REMARK 465 ARG X 142 REMARK 465 LYS X 154 REMARK 465 ARG X 155 REMARK 465 ARG X 156 REMARK 465 LEU X 157 REMARK 465 ILE X 158 REMARK 465 PHE X 159 REMARK 465 SER X 160 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 232 CG CD OE1 OE2 REMARK 470 GLN B 108 CG CD OE1 NE2 REMARK 470 LYS B 190 CG CD CE NZ REMARK 470 LYS B 200 CG CD CE NZ REMARK 470 GLU B 232 CG CD OE1 OE2 REMARK 470 ARG Y 142 CG CD NE CZ NH1 NH2 REMARK 470 ARG X 143 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 242 -126.85 51.44 REMARK 500 GLN B 108 -23.52 78.49 REMARK 500 ASP B 122 64.03 -103.73 REMARK 500 ALA B 242 -131.01 49.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 911 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZVW RELATED DB: PDB DBREF 2ZVV A 1 256 UNP Q9M7Q7 PCNA1_ARATH 1 256 DBREF 2ZVV B 1 256 UNP Q9M7Q7 PCNA1_ARATH 1 256 DBREF 2ZVV Y 139 160 UNP P38936 CDN1A_HUMAN 139 160 DBREF 2ZVV X 139 160 UNP P38936 CDN1A_HUMAN 139 160 SEQADV 2ZVV MET A -19 UNP Q9M7Q7 EXPRESSION TAG SEQADV 2ZVV GLY A -18 UNP Q9M7Q7 EXPRESSION TAG SEQADV 2ZVV SER A -17 UNP Q9M7Q7 EXPRESSION TAG SEQADV 2ZVV SER A -16 UNP Q9M7Q7 EXPRESSION TAG SEQADV 2ZVV HIS A -15 UNP Q9M7Q7 EXPRESSION TAG SEQADV 2ZVV HIS A -14 UNP Q9M7Q7 EXPRESSION TAG SEQADV 2ZVV HIS A -13 UNP Q9M7Q7 EXPRESSION TAG SEQADV 2ZVV HIS A -12 UNP Q9M7Q7 EXPRESSION TAG SEQADV 2ZVV HIS A -11 UNP Q9M7Q7 EXPRESSION TAG SEQADV 2ZVV HIS A -10 UNP Q9M7Q7 EXPRESSION TAG SEQADV 2ZVV SER A -9 UNP Q9M7Q7 EXPRESSION TAG SEQADV 2ZVV SER A -8 UNP Q9M7Q7 EXPRESSION TAG SEQADV 2ZVV GLY A -7 UNP Q9M7Q7 EXPRESSION TAG SEQADV 2ZVV LEU A -6 UNP Q9M7Q7 EXPRESSION TAG SEQADV 2ZVV VAL A -5 UNP Q9M7Q7 EXPRESSION TAG SEQADV 2ZVV PRO A -4 UNP Q9M7Q7 EXPRESSION TAG SEQADV 2ZVV ARG A -3 UNP Q9M7Q7 EXPRESSION TAG SEQADV 2ZVV GLY A -2 UNP Q9M7Q7 EXPRESSION TAG SEQADV 2ZVV SER A -1 UNP Q9M7Q7 EXPRESSION TAG SEQADV 2ZVV HIS A 0 UNP Q9M7Q7 EXPRESSION TAG SEQADV 2ZVV MET B -19 UNP Q9M7Q7 EXPRESSION TAG SEQADV 2ZVV GLY B -18 UNP Q9M7Q7 EXPRESSION TAG SEQADV 2ZVV SER B -17 UNP Q9M7Q7 EXPRESSION TAG SEQADV 2ZVV SER B -16 UNP Q9M7Q7 EXPRESSION TAG SEQADV 2ZVV HIS B -15 UNP Q9M7Q7 EXPRESSION TAG SEQADV 2ZVV HIS B -14 UNP Q9M7Q7 EXPRESSION TAG SEQADV 2ZVV HIS B -13 UNP Q9M7Q7 EXPRESSION TAG SEQADV 2ZVV HIS B -12 UNP Q9M7Q7 EXPRESSION TAG SEQADV 2ZVV HIS B -11 UNP Q9M7Q7 EXPRESSION TAG SEQADV 2ZVV HIS B -10 UNP Q9M7Q7 EXPRESSION TAG SEQADV 2ZVV SER B -9 UNP Q9M7Q7 EXPRESSION TAG SEQADV 2ZVV SER B -8 UNP Q9M7Q7 EXPRESSION TAG SEQADV 2ZVV GLY B -7 UNP Q9M7Q7 EXPRESSION TAG SEQADV 2ZVV LEU B -6 UNP Q9M7Q7 EXPRESSION TAG SEQADV 2ZVV VAL B -5 UNP Q9M7Q7 EXPRESSION TAG SEQADV 2ZVV PRO B -4 UNP Q9M7Q7 EXPRESSION TAG SEQADV 2ZVV ARG B -3 UNP Q9M7Q7 EXPRESSION TAG SEQADV 2ZVV GLY B -2 UNP Q9M7Q7 EXPRESSION TAG SEQADV 2ZVV SER B -1 UNP Q9M7Q7 EXPRESSION TAG SEQADV 2ZVV HIS B 0 UNP Q9M7Q7 EXPRESSION TAG SEQRES 1 A 276 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 276 LEU VAL PRO ARG GLY SER HIS MET LEU GLU LEU ARG LEU SEQRES 3 A 276 VAL GLN GLY SER LEU LEU LYS LYS VAL LEU GLU SER ILE SEQRES 4 A 276 LYS ASP LEU VAL ASN ASP ALA ASN PHE ASP CYS SER SER SEQRES 5 A 276 THR GLY PHE SER LEU GLN ALA MET ASP SER SER HIS VAL SEQRES 6 A 276 ALA LEU VAL SER LEU LEU LEU ARG SER GLU GLY PHE GLU SEQRES 7 A 276 HIS TYR ARG CYS ASP ARG ASN LEU SER MET GLY MET ASN SEQRES 8 A 276 LEU GLY ASN MET SER LYS MET LEU LYS CYS ALA GLY ASN SEQRES 9 A 276 ASP ASP ILE ILE THR ILE LYS ALA ASP ASP GLY GLY ASP SEQRES 10 A 276 THR VAL THR PHE MET PHE GLU SER PRO THR GLN ASP LYS SEQRES 11 A 276 ILE ALA ASP PHE GLU MET LYS LEU MET ASP ILE ASP SER SEQRES 12 A 276 GLU HIS LEU GLY ILE PRO ASP ALA GLU TYR HIS SER ILE SEQRES 13 A 276 VAL ARG MET PRO SER ASN GLU PHE SER ARG ILE CYS LYS SEQRES 14 A 276 ASP LEU SER SER ILE GLY ASP THR VAL VAL ILE SER VAL SEQRES 15 A 276 THR LYS GLU GLY VAL LYS PHE SER THR ALA GLY ASP ILE SEQRES 16 A 276 GLY THR ALA ASN ILE VAL LEU ARG GLN ASN THR THR VAL SEQRES 17 A 276 ASP LYS PRO GLU ASP ALA ILE VAL ILE GLU MET LYS GLU SEQRES 18 A 276 PRO VAL SER LEU SER PHE ALA LEU ARG TYR MET ASN SER SEQRES 19 A 276 PHE THR LYS ALA THR PRO LEU SER ASP THR VAL THR ILE SEQRES 20 A 276 SER LEU SER SER GLU LEU PRO VAL VAL VAL GLU TYR LYS SEQRES 21 A 276 VAL ALA GLU MET GLY TYR ILE ARG TYR TYR LEU ALA PRO SEQRES 22 A 276 LYS ILE GLU SEQRES 1 B 276 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 276 LEU VAL PRO ARG GLY SER HIS MET LEU GLU LEU ARG LEU SEQRES 3 B 276 VAL GLN GLY SER LEU LEU LYS LYS VAL LEU GLU SER ILE SEQRES 4 B 276 LYS ASP LEU VAL ASN ASP ALA ASN PHE ASP CYS SER SER SEQRES 5 B 276 THR GLY PHE SER LEU GLN ALA MET ASP SER SER HIS VAL SEQRES 6 B 276 ALA LEU VAL SER LEU LEU LEU ARG SER GLU GLY PHE GLU SEQRES 7 B 276 HIS TYR ARG CYS ASP ARG ASN LEU SER MET GLY MET ASN SEQRES 8 B 276 LEU GLY ASN MET SER LYS MET LEU LYS CYS ALA GLY ASN SEQRES 9 B 276 ASP ASP ILE ILE THR ILE LYS ALA ASP ASP GLY GLY ASP SEQRES 10 B 276 THR VAL THR PHE MET PHE GLU SER PRO THR GLN ASP LYS SEQRES 11 B 276 ILE ALA ASP PHE GLU MET LYS LEU MET ASP ILE ASP SER SEQRES 12 B 276 GLU HIS LEU GLY ILE PRO ASP ALA GLU TYR HIS SER ILE SEQRES 13 B 276 VAL ARG MET PRO SER ASN GLU PHE SER ARG ILE CYS LYS SEQRES 14 B 276 ASP LEU SER SER ILE GLY ASP THR VAL VAL ILE SER VAL SEQRES 15 B 276 THR LYS GLU GLY VAL LYS PHE SER THR ALA GLY ASP ILE SEQRES 16 B 276 GLY THR ALA ASN ILE VAL LEU ARG GLN ASN THR THR VAL SEQRES 17 B 276 ASP LYS PRO GLU ASP ALA ILE VAL ILE GLU MET LYS GLU SEQRES 18 B 276 PRO VAL SER LEU SER PHE ALA LEU ARG TYR MET ASN SER SEQRES 19 B 276 PHE THR LYS ALA THR PRO LEU SER ASP THR VAL THR ILE SEQRES 20 B 276 SER LEU SER SER GLU LEU PRO VAL VAL VAL GLU TYR LYS SEQRES 21 B 276 VAL ALA GLU MET GLY TYR ILE ARG TYR TYR LEU ALA PRO SEQRES 22 B 276 LYS ILE GLU SEQRES 1 Y 22 GLY ARG LYS ARG ARG GLN THR SER MET THR ASP PHE TYR SEQRES 2 Y 22 HIS SER LYS ARG ARG LEU ILE PHE SER SEQRES 1 X 22 GLY ARG LYS ARG ARG GLN THR SER MET THR ASP PHE TYR SEQRES 2 X 22 HIS SER LYS ARG ARG LEU ILE PHE SER HET SO4 A 901 5 HET SO4 B 911 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 2(O4 S 2-) FORMUL 7 HOH *214(H2 O) HELIX 1 1 GLY A 9 LYS A 20 1 12 HELIX 2 2 GLU A 55 PHE A 57 5 3 HELIX 3 3 LEU A 72 CYS A 81 1 10 HELIX 4 4 SER A 141 SER A 153 1 13 HELIX 5 5 LYS A 190 ALA A 194 5 5 HELIX 6 6 LEU A 209 THR A 216 1 8 HELIX 7 7 LYS A 217 SER A 222 5 6 HELIX 8 8 GLN B 8 LYS B 20 1 13 HELIX 9 9 GLU B 55 PHE B 57 5 3 HELIX 10 10 LEU B 72 LYS B 80 1 9 HELIX 11 11 SER B 141 SER B 153 1 13 HELIX 12 12 LYS B 190 ALA B 194 5 5 HELIX 13 13 LEU B 209 THR B 216 1 8 HELIX 14 14 LYS B 217 SER B 222 5 6 HELIX 15 15 SER Y 146 PHE Y 150 5 5 HELIX 16 16 SER X 146 PHE X 150 5 5 SHEET 1 A 5 HIS A 59 CYS A 62 0 SHEET 2 A 5 LEU A 2 LEU A 6 -1 N ARG A 5 O HIS A 59 SHEET 3 A 5 ILE A 87 ALA A 92 -1 O ILE A 88 N LEU A 6 SHEET 4 A 5 THR A 98 GLU A 104 -1 O GLU A 104 N ILE A 87 SHEET 5 A 5 ILE A 111 LYS A 117 -1 O PHE A 114 N PHE A 101 SHEET 1 B 9 LEU A 66 ASN A 71 0 SHEET 2 B 9 ASP A 25 SER A 31 -1 N CYS A 30 O LEU A 66 SHEET 3 B 9 GLY A 34 MET A 40 -1 O SER A 36 N ASP A 29 SHEET 4 B 9 ALA A 46 ARG A 53 -1 O VAL A 48 N ALA A 39 SHEET 5 B 9 GLY A 245 LEU A 251 -1 O TYR A 250 N LEU A 47 SHEET 6 B 9 VAL A 235 VAL A 241 -1 N VAL A 237 O TYR A 249 SHEET 7 B 9 THR A 224 LEU A 229 -1 N THR A 226 O GLU A 238 SHEET 8 B 9 SER A 135 PRO A 140 -1 N SER A 135 O LEU A 229 SHEET 9 B 9 VAL A 196 MET A 199 -1 O VAL A 196 N ARG A 138 SHEET 1 C 2 ILE A 121 ASP A 122 0 SHEET 2 C 2 ASP B 120 ILE B 121 1 O ASP B 120 N ASP A 122 SHEET 1 D 4 GLY A 176 LEU A 182 0 SHEET 2 D 4 GLY A 166 GLY A 173 -1 N GLY A 173 O GLY A 176 SHEET 3 D 4 THR A 157 THR A 163 -1 N VAL A 159 O SER A 170 SHEET 4 D 4 VAL A 203 ALA A 208 -1 O LEU A 205 N ILE A 160 SHEET 1 E 5 HIS B 59 CYS B 62 0 SHEET 2 E 5 LEU B 2 LEU B 6 -1 N GLU B 3 O ARG B 61 SHEET 3 E 5 ILE B 87 ALA B 92 -1 O ILE B 88 N LEU B 6 SHEET 4 E 5 THR B 98 GLU B 104 -1 O GLU B 104 N ILE B 87 SHEET 5 E 5 ILE B 111 LYS B 117 -1 O PHE B 114 N PHE B 101 SHEET 1 F 9 LEU B 66 ASN B 71 0 SHEET 2 F 9 ASP B 25 CYS B 30 -1 N CYS B 30 O LEU B 66 SHEET 3 F 9 GLY B 34 MET B 40 -1 O SER B 36 N ASP B 29 SHEET 4 F 9 ALA B 46 ARG B 53 -1 O VAL B 48 N ALA B 39 SHEET 5 F 9 GLY B 245 LEU B 251 -1 O ARG B 248 N SER B 49 SHEET 6 F 9 VAL B 235 VAL B 241 -1 N VAL B 237 O TYR B 249 SHEET 7 F 9 THR B 224 LEU B 229 -1 N SER B 228 O VAL B 236 SHEET 8 F 9 SER B 135 PRO B 140 -1 N SER B 135 O LEU B 229 SHEET 9 F 9 VAL B 196 MET B 199 -1 O GLU B 198 N ILE B 136 SHEET 1 G 4 GLY B 176 LEU B 182 0 SHEET 2 G 4 GLY B 166 GLY B 173 -1 N GLY B 173 O GLY B 176 SHEET 3 G 4 THR B 157 THR B 163 -1 N VAL B 159 O SER B 170 SHEET 4 G 4 VAL B 203 ALA B 208 -1 O LEU B 205 N ILE B 160 SHEET 1 H 2 LYS B 254 ILE B 255 0 SHEET 2 H 2 ARG Y 143 GLN Y 144 -1 O ARG Y 143 N ILE B 255 SITE 1 AC1 5 ASP A 156 ALA A 208 ARG A 210 LYS A 254 SITE 2 AC1 5 HOH A1013 SITE 1 AC2 6 ASP B 156 ALA B 208 ARG B 210 LYS B 254 SITE 2 AC2 6 HOH B1029 HOH B1207 CRYST1 111.010 111.010 403.903 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009008 0.005201 0.000000 0.00000 SCALE2 0.000000 0.010402 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002476 0.00000