PDB Short entry for 3AEA HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 04-FEB-10 3AEA TITLE CRYSTAL STRUCTURE OF PORCINE HEART MITOCHONDRIAL COMPLEX II BOUND WITH TITLE 2 N-(3-DIMETHYLAMINOMETHYL-PHENYL)-2-TRIFLUOROMETHYL-BENZAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, COMPND 3 MITOCHONDRIAL; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: FLAVOPROTEIN SUBUNIT OF COMPLEX II, FP; COMPND 6 EC: 1.3.5.1; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SUCCINATE DEHYDROGENASE [UBIQUINONE] IRON-SULFUR SUBUNIT, COMPND 9 MITOCHONDRIAL; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: IRON-SULFUR SUBUNIT OF COMPLEX II, IP; COMPND 12 EC: 1.3.5.1; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNIT, COMPND 15 MITOCHONDRIAL; COMPND 16 CHAIN: C; COMPND 17 SYNONYM: SUCCINATE-UBIQUINONE OXIDOREDUCTASE CYTOCHROME B LARGE COMPND 18 SUBUNIT, CYBL; COMPND 19 MOL_ID: 4; COMPND 20 MOLECULE: SUCCINATE DEHYDROGENASE [UBIQUINONE] CYTOCHROME B SMALL COMPND 21 SUBUNIT, MITOCHONDRIAL; COMPND 22 CHAIN: D; COMPND 23 FRAGMENT: RESIDUES 57-159; COMPND 24 SYNONYM: SUCCINATE-UBIQUINONE OXIDOREDUCTASE CYTOCHROME B SMALL COMPND 25 SUBUNIT, CYBS, SUCCINATE-UBIQUINONE REDUCTASE MEMBRANE ANCHOR COMPND 26 SUBUNIT, QPS3, CII-4, SUCCINATE DEHYDROGENASE COMPLEX SUBUNIT D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 ORGAN: HEART; SOURCE 6 TISSUE: MUSCLE; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 9 ORGANISM_COMMON: PIG; SOURCE 10 ORGANISM_TAXID: 9823; SOURCE 11 ORGAN: HEART; SOURCE 12 TISSUE: MUSCLE; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 15 ORGANISM_COMMON: PIG; SOURCE 16 ORGANISM_TAXID: 9823; SOURCE 17 ORGAN: HEART; SOURCE 18 TISSUE: MUSCLE; SOURCE 19 MOL_ID: 4; SOURCE 20 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 21 ORGANISM_COMMON: PIG; SOURCE 22 ORGANISM_TAXID: 9823; SOURCE 23 ORGAN: HEART; SOURCE 24 TISSUE: MUSCLE KEYWDS RESPIRATORY COMPLEX II, INHIBITORS, ELECTRON TRANSPORT, IRON, IRON- KEYWDS 2 SULFUR, METAL-BINDING, MITOCHONDRION, MITOCHONDRION INNER MEMBRANE, KEYWDS 3 OXIDOREDUCTASE, TRANSIT PEPTIDE, TRANSPORT, TRICARBOXYLIC ACID KEYWDS 4 CYCLE, HEME, TRANSMEMBRANE, FAD-BINDING PROTEIN, OXIDOREDUCTASE- KEYWDS 5 OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.HARADA,T.SASAKI,M.SHINDO,Y.KIDO,D.K.INAOKA,J.OMORI,A.OSANAI, AUTHOR 2 K.SAKAMOTO,J.MAO,S.MATSUOKA,M.INOUE,T.HONMA,A.TANAKA,K.KITA REVDAT 3 11-OCT-17 3AEA 1 REMARK REVDAT 2 05-AUG-15 3AEA 1 JRNL VERSN REVDAT 1 09-FEB-11 3AEA 0 JRNL AUTH D.K.INAOKA,T.SHIBA,D.SATO,E.O.BALOGUN,T.SASAKI,M.NAGAHAMA, JRNL AUTH 2 M.ODA,S.MATSUOKA,J.OHMORI,T.HONMA,M.INOUE,K.KITA,S.HARADA JRNL TITL STRUCTURAL INSIGHTS INTO THE MOLECULAR DESIGN OF FLUTOLANIL JRNL TITL 2 DERIVATIVES TARGETED FOR FUMARATE RESPIRATION OF PARASITE JRNL TITL 3 MITOCHONDRIA JRNL REF INT J MOL SCI V. 16 15287 2015 JRNL REFN ESSN 1422-0067 JRNL PMID 26198225 JRNL DOI 10.3390/IJMS160715287 REMARK 2 REMARK 2 RESOLUTION. 3.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 25081 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1271 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.39 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.47 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1587 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.3740 REMARK 3 BIN FREE R VALUE SET COUNT : 97 REMARK 3 BIN FREE R VALUE : 0.4420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8480 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 189 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 113.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.13000 REMARK 3 B22 (A**2) : 0.27000 REMARK 3 B33 (A**2) : -0.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.599 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.494 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 62.262 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.913 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.878 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8873 ; 0.005 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 12031 ; 0.876 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1088 ; 4.235 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 375 ;33.752 ;23.413 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1469 ;15.289 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 59 ;11.893 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1305 ; 0.057 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6662 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5410 ; 0.117 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 8674 ; 0.216 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3463 ; 0.184 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3340 ; 0.334 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 256 REMARK 3 ORIGIN FOR THE GROUP (A): 19.2070 17.7680 -17.8950 REMARK 3 T TENSOR REMARK 3 T11: 0.1724 T22: 0.1213 REMARK 3 T33: 0.4135 T12: 0.0968 REMARK 3 T13: 0.0018 T23: 0.0286 REMARK 3 L TENSOR REMARK 3 L11: 2.3258 L22: 1.1106 REMARK 3 L33: 4.8738 L12: 0.4450 REMARK 3 L13: 0.5287 L23: -0.5833 REMARK 3 S TENSOR REMARK 3 S11: -0.0217 S12: 0.1495 S13: 0.0392 REMARK 3 S21: 0.0429 S22: -0.0480 S23: -0.0056 REMARK 3 S31: 0.4079 S32: -0.0204 S33: 0.0697 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 257 A 349 REMARK 3 ORIGIN FOR THE GROUP (A): 16.8750 -8.5520 -24.6500 REMARK 3 T TENSOR REMARK 3 T11: 2.1955 T22: 0.3025 REMARK 3 T33: 1.0427 T12: -0.0523 REMARK 3 T13: -0.4201 T23: -0.0198 REMARK 3 L TENSOR REMARK 3 L11: 3.8317 L22: 0.6231 REMARK 3 L33: 0.2077 L12: -1.4065 REMARK 3 L13: 0.3163 L23: -0.2431 REMARK 3 S TENSOR REMARK 3 S11: 0.5735 S12: 0.3955 S13: -0.8476 REMARK 3 S21: -0.7091 S22: -0.2303 S23: 0.3565 REMARK 3 S31: 0.6407 S32: -0.0322 S33: -0.3431 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 350 A 622 REMARK 3 ORIGIN FOR THE GROUP (A): 31.7310 10.7190 -11.7020 REMARK 3 T TENSOR REMARK 3 T11: 0.2041 T22: 0.2312 REMARK 3 T33: 0.4075 T12: 0.1596 REMARK 3 T13: -0.0428 T23: 0.0807 REMARK 3 L TENSOR REMARK 3 L11: 2.4462 L22: 1.7937 REMARK 3 L33: 4.3648 L12: 0.3929 REMARK 3 L13: -0.1378 L23: -0.6568 REMARK 3 S TENSOR REMARK 3 S11: -0.0747 S12: 0.1024 S13: -0.2924 REMARK 3 S21: 0.1912 S22: -0.0108 S23: -0.2066 REMARK 3 S31: 0.7071 S32: 0.6399 S33: 0.0854 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 9 B 106 REMARK 3 ORIGIN FOR THE GROUP (A): 32.9990 11.7690 -46.0470 REMARK 3 T TENSOR REMARK 3 T11: 0.1814 T22: 0.5391 REMARK 3 T33: 0.4039 T12: 0.2158 REMARK 3 T13: 0.1114 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 2.9144 L22: 3.8027 REMARK 3 L33: 4.8256 L12: 0.5574 REMARK 3 L13: 0.5849 L23: 0.2533 REMARK 3 S TENSOR REMARK 3 S11: -0.1108 S12: 0.6312 S13: -0.5236 REMARK 3 S21: -0.3833 S22: 0.1051 S23: -0.4665 REMARK 3 S31: 0.5761 S32: 1.1389 S33: 0.0057 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 107 B 247 REMARK 3 ORIGIN FOR THE GROUP (A): 6.4080 24.2640 -40.1430 REMARK 3 T TENSOR REMARK 3 T11: 0.3132 T22: 0.1516 REMARK 3 T33: 0.5143 T12: 0.0603 REMARK 3 T13: -0.0927 T23: -0.1268 REMARK 3 L TENSOR REMARK 3 L11: 2.9938 L22: 0.5432 REMARK 3 L33: 6.4904 L12: 0.5042 REMARK 3 L13: 1.7308 L23: -1.0194 REMARK 3 S TENSOR REMARK 3 S11: -0.1174 S12: -0.1895 S13: 0.0295 REMARK 3 S21: -0.1117 S22: 0.0143 S23: 0.2104 REMARK 3 S31: -0.2424 S32: -0.6760 S33: 0.1031 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 6 C 65 REMARK 3 ORIGIN FOR THE GROUP (A): 16.1350 29.7450 -58.4270 REMARK 3 T TENSOR REMARK 3 T11: 0.3937 T22: 0.1523 REMARK 3 T33: 0.4480 T12: 0.0085 REMARK 3 T13: -0.0559 T23: 0.0927 REMARK 3 L TENSOR REMARK 3 L11: 1.7407 L22: 0.9600 REMARK 3 L33: 3.6037 L12: 0.0514 REMARK 3 L13: 1.1177 L23: -0.1989 REMARK 3 S TENSOR REMARK 3 S11: -0.1047 S12: 0.1455 S13: 0.0041 REMARK 3 S21: -0.1756 S22: -0.1062 S23: -0.0597 REMARK 3 S31: -0.2751 S32: 0.6880 S33: 0.2109 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 66 C 89 REMARK 3 ORIGIN FOR THE GROUP (A): 1.7800 28.2190 -94.6590 REMARK 3 T TENSOR REMARK 3 T11: 1.0654 T22: 0.7672 REMARK 3 T33: 0.4614 T12: 0.0539 REMARK 3 T13: -0.0358 T23: 0.1647 REMARK 3 L TENSOR REMARK 3 L11: 1.2998 L22: 13.8113 REMARK 3 L33: 11.2638 L12: -3.3474 REMARK 3 L13: 2.2292 L23: 0.3123 REMARK 3 S TENSOR REMARK 3 S11: 0.8048 S12: 0.2833 S13: 0.0097 REMARK 3 S21: -2.0002 S22: -0.5041 S23: -0.2042 REMARK 3 S31: 1.5932 S32: 0.2343 S33: -0.3007 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 90 C 120 REMARK 3 ORIGIN FOR THE GROUP (A): 0.9610 17.5630 -66.8630 REMARK 3 T TENSOR REMARK 3 T11: 0.7381 T22: 0.2185 REMARK 3 T33: 0.5418 T12: 0.0339 REMARK 3 T13: -0.1567 T23: -0.0650 REMARK 3 L TENSOR REMARK 3 L11: 5.2129 L22: 2.8195 REMARK 3 L33: 6.4579 L12: -1.7902 REMARK 3 L13: 5.7131 L23: -1.3606 REMARK 3 S TENSOR REMARK 3 S11: 0.5510 S12: 0.3135 S13: -0.2490 REMARK 3 S21: -0.7752 S22: -0.2259 S23: 0.3827 REMARK 3 S31: 0.5749 S32: 0.3957 S33: -0.3251 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 121 C 143 REMARK 3 ORIGIN FOR THE GROUP (A): 1.2160 11.0710 -72.0470 REMARK 3 T TENSOR REMARK 3 T11: 0.6639 T22: 0.0702 REMARK 3 T33: 0.4662 T12: 0.0534 REMARK 3 T13: -0.2043 T23: -0.0821 REMARK 3 L TENSOR REMARK 3 L11: 3.5636 L22: 3.2004 REMARK 3 L33: 13.9912 L12: 0.4437 REMARK 3 L13: 1.8503 L23: 3.7758 REMARK 3 S TENSOR REMARK 3 S11: 0.5448 S12: 0.1216 S13: 0.0646 REMARK 3 S21: 0.0554 S22: -0.1557 S23: 0.6239 REMARK 3 S31: 0.1992 S32: 0.2137 S33: -0.3892 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 35 D 96 REMARK 3 ORIGIN FOR THE GROUP (A): -3.9310 32.0910 -65.7370 REMARK 3 T TENSOR REMARK 3 T11: 0.6024 T22: 0.2931 REMARK 3 T33: 0.6663 T12: 0.1422 REMARK 3 T13: -0.2307 T23: -0.1270 REMARK 3 L TENSOR REMARK 3 L11: 1.9500 L22: 3.4982 REMARK 3 L33: 5.1925 L12: -0.0802 REMARK 3 L13: -2.6095 L23: -2.2567 REMARK 3 S TENSOR REMARK 3 S11: 0.0121 S12: -0.0060 S13: 0.1719 REMARK 3 S21: 0.0342 S22: 0.1439 S23: 0.1906 REMARK 3 S31: -0.2073 S32: -0.2176 S33: -0.1559 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 97 D 136 REMARK 3 ORIGIN FOR THE GROUP (A): -2.8470 37.3300 -79.0230 REMARK 3 T TENSOR REMARK 3 T11: 0.6881 T22: 0.6469 REMARK 3 T33: 0.6146 T12: -0.0016 REMARK 3 T13: -0.1553 T23: -0.0317 REMARK 3 L TENSOR REMARK 3 L11: 5.3630 L22: 4.9937 REMARK 3 L33: 4.7789 L12: -1.0236 REMARK 3 L13: 2.0550 L23: -3.2969 REMARK 3 S TENSOR REMARK 3 S11: -0.0918 S12: 0.2115 S13: 0.3412 REMARK 3 S21: 0.1044 S22: -0.4912 S23: 0.0807 REMARK 3 S31: -0.0783 S32: -0.6819 S33: 0.5830 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3AEA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000029144. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25146 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.390 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.3330 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.59400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.180 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1ZOY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25MM HEPES-NAOH, 5% PEG 4000, 200MM REMARK 280 SUCROSE, 100MM NACL, 10MM CACL2, 0.5MM EDTA, 3% 1,6-HAXANEDIOL, REMARK 280 0.5% N-DECYL-BETA-D-MALTOSIDE, PH 7.2, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.75250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 147.47950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.87550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 147.47950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.75250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.87550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THESE COMPLEX FORMS MITOCHONDRIAL RESPIRATORY COMPLEX II. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 SER A 2 REMARK 465 ALA A 3 REMARK 465 LYS A 4 REMARK 465 VAL A 5 REMARK 465 SER A 6 REMARK 465 ASP A 7 REMARK 465 ALA A 8 REMARK 465 ILE A 9 REMARK 465 ALA B 1 REMARK 465 GLN B 2 REMARK 465 THR B 3 REMARK 465 ALA B 4 REMARK 465 ALA B 5 REMARK 465 ALA B 6 REMARK 465 THR B 7 REMARK 465 ALA B 8 REMARK 465 LYS B 248 REMARK 465 LYS B 249 REMARK 465 ALA B 250 REMARK 465 SER B 251 REMARK 465 ALA B 252 REMARK 465 LEU C 4 REMARK 465 GLY C 5 REMARK 465 ALA D 34 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 181 C - N - CA ANGL. DEV. = 9.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 72 -61.72 -94.05 REMARK 500 ALA A 151 -139.60 52.32 REMARK 500 ARG A 153 53.21 -111.17 REMARK 500 ASN A 278 -149.28 -97.57 REMARK 500 ARG A 283 91.34 -69.93 REMARK 500 TYR A 288 -61.65 -93.09 REMARK 500 LYS A 293 -140.52 57.47 REMARK 500 LEU A 295 47.38 -101.68 REMARK 500 LYS A 319 78.15 57.70 REMARK 500 ASP A 320 -39.15 -139.80 REMARK 500 VAL A 322 -140.58 -104.60 REMARK 500 LEU A 334 33.89 -85.38 REMARK 500 ALA A 335 -30.89 -135.52 REMARK 500 HIS A 365 -58.98 -134.07 REMARK 500 CYS A 401 79.95 -153.67 REMARK 500 ALA A 482 -154.38 -77.88 REMARK 500 HIS A 506 33.07 -99.14 REMARK 500 TRP A 516 73.88 41.54 REMARK 500 LYS A 544 68.05 -107.65 REMARK 500 PHE A 555 70.27 -114.66 REMARK 500 GLN A 569 -80.78 -159.29 REMARK 500 GLN A 577 35.88 -95.07 REMARK 500 GLU A 578 -24.29 -140.02 REMARK 500 ASN B 39 51.08 -100.35 REMARK 500 GLU B 54 -55.24 -122.31 REMARK 500 SER B 57 44.22 -91.09 REMARK 500 LEU B 59 98.17 -58.07 REMARK 500 SER B 64 -83.11 -151.55 REMARK 500 ARG B 66 26.65 43.59 REMARK 500 CYS B 70 -45.29 -138.61 REMARK 500 CYS B 73 23.72 -79.44 REMARK 500 ASP B 110 -133.22 51.42 REMARK 500 LEU B 111 30.71 -81.38 REMARK 500 GLU B 126 76.94 60.80 REMARK 500 ASN C 23 31.99 -84.32 REMARK 500 HIS C 29 -65.83 -135.77 REMARK 500 ASP D 123 -169.14 -115.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 EPH D 1306 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES B 302 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 73 SG REMARK 620 2 FES B 302 S1 136.0 REMARK 620 3 FES B 302 S2 117.6 91.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 303 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 161 SG REMARK 620 2 SF4 B 303 S1 119.4 REMARK 620 3 SF4 B 303 S3 109.6 103.7 REMARK 620 4 SF4 B 303 S4 112.1 105.7 105.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES B 302 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 65 SG REMARK 620 2 FES B 302 S1 115.5 REMARK 620 3 FES B 302 S2 131.4 91.1 REMARK 620 4 CYS B 70 SG 107.0 106.9 102.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 F3S B 304 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 168 SG REMARK 620 2 F3S B 304 S2 110.3 REMARK 620 3 F3S B 304 S3 136.4 99.6 REMARK 620 4 F3S B 304 S4 107.3 100.3 97.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 303 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 164 SG REMARK 620 2 SF4 B 303 S2 118.4 REMARK 620 3 SF4 B 303 S3 102.6 106.2 REMARK 620 4 SF4 B 303 S4 118.8 104.6 104.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM C1305 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 101 NE2 REMARK 620 2 HEM C1305 NA 91.4 REMARK 620 3 HEM C1305 NB 100.0 88.8 REMARK 620 4 HEM C1305 NC 86.2 176.7 89.5 REMARK 620 5 HEM C1305 ND 83.1 92.6 176.6 89.3 REMARK 620 6 HIS D 79 NE2 170.8 97.4 82.8 85.2 93.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 303 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 158 SG REMARK 620 2 SF4 B 303 S1 131.5 REMARK 620 3 SF4 B 303 S2 107.2 104.8 REMARK 620 4 SF4 B 303 S4 100.3 105.8 104.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 F3S B 304 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 215 SG REMARK 620 2 F3S B 304 S1 95.2 REMARK 620 3 F3S B 304 S2 122.6 101.0 REMARK 620 4 F3S B 304 S3 135.6 87.5 100.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 303 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 225 SG REMARK 620 2 SF4 B 303 S1 104.8 REMARK 620 3 SF4 B 303 S2 134.4 104.8 REMARK 620 4 SF4 B 303 S3 99.2 103.8 106.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE F3S B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLI A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM C 1305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE F9A D 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPH D 1306 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ABV RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE1 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE2 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE3 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE4 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE5 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE6 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE7 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE8 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE9 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AEB RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AEC RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AED RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AEE RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AEF RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX WITH AN EMPTY QUINONE-BINDING POCKET REMARK 900 RELATED ID: 3AEG RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF CHAIN D IS REFERRED IN REF 2 IN A5GZW8, UNIPROT. DBREF 3AEA A 1 622 UNP Q0QF01 DHSA_PIG 43 664 DBREF 3AEA B 1 252 UNP Q007T0 DHSB_PIG 29 280 DBREF 3AEA C 4 143 UNP D0VWV4 C560_PIG 30 169 DBREF 3AEA D 34 136 UNP A5GZW8 DHSD_PIG 57 159 SEQRES 1 A 622 SER SER ALA LYS VAL SER ASP ALA ILE SER THR GLN TYR SEQRES 2 A 622 PRO VAL VAL ASP HIS GLU PHE ASP ALA VAL VAL VAL GLY SEQRES 3 A 622 ALA GLY GLY ALA GLY LEU ARG ALA ALA PHE GLY LEU SER SEQRES 4 A 622 GLU ALA GLY PHE ASN THR ALA CYS VAL THR LYS LEU PHE SEQRES 5 A 622 PRO THR ARG SER HIS THR VAL ALA ALA GLN GLY GLY ILE SEQRES 6 A 622 ASN ALA ALA LEU GLY ASN MET GLU GLU ASP ASN TRP ARG SEQRES 7 A 622 TRP HIS PHE TYR ASP THR VAL LYS GLY SER ASP TRP LEU SEQRES 8 A 622 GLY ASP GLN ASP ALA ILE HIS TYR MET THR GLU GLN ALA SEQRES 9 A 622 PRO ALA SER VAL VAL GLU LEU GLU ASN TYR GLY MET PRO SEQRES 10 A 622 PHE SER ARG THR GLU ASP GLY LYS ILE TYR GLN ARG ALA SEQRES 11 A 622 PHE GLY GLY GLN SER LEU LYS PHE GLY LYS GLY GLY GLN SEQRES 12 A 622 ALA HIS ARG CYS CYS CYS VAL ALA ASP ARG THR GLY HIS SEQRES 13 A 622 SER LEU LEU HIS THR LEU TYR GLY ARG SER LEU ARG TYR SEQRES 14 A 622 ASP THR SER TYR PHE VAL GLU TYR PHE ALA LEU ASP LEU SEQRES 15 A 622 LEU MET GLU ASN GLY GLU CYS ARG GLY VAL ILE ALA LEU SEQRES 16 A 622 CYS ILE GLU ASP GLY SER ILE HIS ARG ILE ARG ALA ARG SEQRES 17 A 622 ASN THR VAL VAL ALA THR GLY GLY TYR GLY ARG THR TYR SEQRES 18 A 622 PHE SER CYS THR SER ALA HIS THR SER THR GLY ASP GLY SEQRES 19 A 622 THR ALA MET VAL THR ARG ALA GLY LEU PRO CYS GLN ASP SEQRES 20 A 622 LEU GLU PHE VAL GLN PHE HIS PRO THR GLY ILE TYR GLY SEQRES 21 A 622 ALA GLY CYS LEU ILE THR GLU GLY CYS ARG GLY GLU GLY SEQRES 22 A 622 GLY ILE LEU ILE ASN SER GLN GLY GLU ARG PHE MET GLU SEQRES 23 A 622 ARG TYR ALA PRO VAL ALA LYS ASP LEU ALA SER ARG ASP SEQRES 24 A 622 VAL VAL SER ARG SER MET THR LEU GLU ILE ARG GLU GLY SEQRES 25 A 622 ARG GLY CYS GLY PRO GLU LYS ASP HIS VAL TYR LEU GLN SEQRES 26 A 622 LEU HIS HIS LEU PRO PRO GLU GLN LEU ALA VAL ARG LEU SEQRES 27 A 622 PRO GLY ILE SER GLU THR ALA MET ILE PHE ALA GLY VAL SEQRES 28 A 622 ASP VAL THR LYS GLU PRO ILE PRO VAL LEU PRO THR VAL SEQRES 29 A 622 HIS TYR ASN MET GLY GLY ILE PRO THR ASN TYR LYS GLY SEQRES 30 A 622 GLN VAL LEU ARG HIS VAL ASN GLY GLN ASP GLN VAL VAL SEQRES 31 A 622 PRO GLY LEU TYR ALA CYS GLY GLU ALA ALA CYS ALA SER SEQRES 32 A 622 VAL HIS GLY ALA ASN ARG LEU GLY ALA ASN SER LEU LEU SEQRES 33 A 622 ASP LEU VAL VAL PHE GLY ARG ALA CYS ALA LEU SER ILE SEQRES 34 A 622 ALA GLU SER CYS ARG PRO GLY ASP LYS VAL PRO SER ILE SEQRES 35 A 622 LYS PRO ASN ALA GLY GLU GLU SER VAL MET ASN LEU ASP SEQRES 36 A 622 LYS LEU ARG PHE ALA ASN GLY THR ILE ARG THR SER GLU SEQRES 37 A 622 LEU ARG LEU SER MET GLN LYS SER MET GLN SER HIS ALA SEQRES 38 A 622 ALA VAL PHE ARG VAL GLY SER VAL LEU GLN GLU GLY CYS SEQRES 39 A 622 GLU LYS ILE LEU ARG LEU TYR GLY ASP LEU GLN HIS LEU SEQRES 40 A 622 LYS THR PHE ASP ARG GLY MET VAL TRP ASN THR ASP LEU SEQRES 41 A 622 VAL GLU THR LEU GLU LEU GLN ASN LEU MET LEU CYS ALA SEQRES 42 A 622 LEU GLN THR ILE TYR GLY ALA GLU ALA ARG LYS GLU SER SEQRES 43 A 622 ARG GLY ALA HIS ALA ARG GLU ASP PHE LYS GLU ARG VAL SEQRES 44 A 622 ASP GLU TYR ASP TYR SER LYS PRO ILE GLN GLY GLN GLN SEQRES 45 A 622 LYS LYS PRO PHE GLN GLU HIS TRP ARG LYS HIS THR LEU SEQRES 46 A 622 SER TYR VAL ASP VAL LYS THR GLY LYS VAL SER LEU GLU SEQRES 47 A 622 TYR ARG PRO VAL ILE ASP LYS THR LEU ASN GLU ALA ASP SEQRES 48 A 622 CYS ALA THR VAL PRO PRO ALA ILE ARG SER TYR SEQRES 1 B 252 ALA GLN THR ALA ALA ALA THR ALA PRO ARG ILE LYS LYS SEQRES 2 B 252 PHE ALA ILE TYR ARG TRP ASP PRO ASP LYS THR GLY ASP SEQRES 3 B 252 LYS PRO HIS MET GLN THR TYR GLU ILE ASP LEU ASN ASN SEQRES 4 B 252 CYS GLY PRO MET VAL LEU ASP ALA LEU ILE LYS ILE LYS SEQRES 5 B 252 ASN GLU ILE ASP SER THR LEU THR PHE ARG ARG SER CYS SEQRES 6 B 252 ARG GLU GLY ILE CYS GLY SER CYS ALA MET ASN ILE ASN SEQRES 7 B 252 GLY GLY ASN THR LEU ALA CYS THR ARG ARG ILE ASP THR SEQRES 8 B 252 ASN LEU ASP LYS VAL SER LYS ILE TYR PRO LEU PRO HIS SEQRES 9 B 252 MET TYR VAL ILE LYS ASP LEU VAL PRO ASP LEU SER ASN SEQRES 10 B 252 PHE TYR ALA GLN TYR LYS SER ILE GLU PRO TYR LEU LYS SEQRES 11 B 252 LYS LYS ASP GLU SER GLN GLU GLY LYS GLN GLN TYR LEU SEQRES 12 B 252 GLN SER ILE GLU GLU ARG GLU LYS LEU ASP GLY LEU TYR SEQRES 13 B 252 GLU CYS ILE LEU CYS ALA CYS CYS SER THR SER CYS PRO SEQRES 14 B 252 SER TYR TRP TRP ASN GLY ASP LYS TYR LEU GLY PRO ALA SEQRES 15 B 252 VAL LEU MET GLN ALA TYR ARG TRP MET ILE ASP SER ARG SEQRES 16 B 252 ASP ASP PHE THR GLU GLU ARG LEU ALA LYS LEU GLN ASP SEQRES 17 B 252 PRO PHE SER LEU TYR ARG CYS HIS THR ILE MET ASN CYS SEQRES 18 B 252 THR GLY THR CYS PRO LYS GLY LEU ASN PRO GLY LYS ALA SEQRES 19 B 252 ILE ALA GLU ILE LYS LYS MET MET ALA THR TYR LYS GLU SEQRES 20 B 252 LYS LYS ALA SER ALA SEQRES 1 C 140 LEU GLY THR THR ALA LYS GLU GLU MET GLU ARG PHE TRP SEQRES 2 C 140 ASN LYS ASN LEU GLY SER ASN ARG PRO LEU SER PRO HIS SEQRES 3 C 140 ILE THR ILE TYR ARG TRP SER LEU PRO MET ALA MET SER SEQRES 4 C 140 ILE CYS HIS ARG GLY THR GLY ILE ALA LEU SER ALA GLY SEQRES 5 C 140 VAL SER LEU PHE GLY LEU SER ALA LEU LEU LEU PRO GLY SEQRES 6 C 140 ASN PHE GLU SER HIS LEU GLU LEU VAL LYS SER LEU CYS SEQRES 7 C 140 LEU GLY PRO THR LEU ILE TYR THR ALA LYS PHE GLY ILE SEQRES 8 C 140 VAL PHE PRO LEU MET TYR HIS THR TRP ASN GLY ILE ARG SEQRES 9 C 140 HIS LEU ILE TRP ASP LEU GLY LYS GLY LEU THR ILE PRO SEQRES 10 C 140 GLN LEU THR GLN SER GLY VAL VAL VAL LEU ILE LEU THR SEQRES 11 C 140 VAL LEU SER SER VAL GLY LEU ALA ALA MET SEQRES 1 D 103 ALA SER SER LYS ALA ALA SER LEU HIS TRP THR GLY GLU SEQRES 2 D 103 ARG VAL VAL SER VAL LEU LEU LEU GLY LEU LEU PRO ALA SEQRES 3 D 103 ALA TYR LEU ASN PRO CYS SER ALA MET ASP TYR SER LEU SEQRES 4 D 103 ALA ALA ALA LEU THR LEU HIS GLY HIS TRP GLY ILE GLY SEQRES 5 D 103 GLN VAL VAL THR ASP TYR VAL ARG GLY ASP ALA LEU GLN SEQRES 6 D 103 LYS ALA ALA LYS ALA GLY LEU LEU ALA LEU SER ALA PHE SEQRES 7 D 103 THR PHE ALA GLY LEU CYS TYR PHE ASN TYR HIS ASP VAL SEQRES 8 D 103 GLY ILE CYS LYS ALA VAL ALA MET LEU TRP LYS LEU HET FAD A 700 53 HET MLI A 701 7 HET FES B 302 4 HET SF4 B 303 8 HET F3S B 304 7 HET HEM C1305 43 HET F9A D1201 23 HET EPH D1306 44 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM MLI MALONATE ION HETNAM FES FE2/S2 (INORGANIC) CLUSTER HETNAM SF4 IRON/SULFUR CLUSTER HETNAM F3S FE3-S4 CLUSTER HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM F9A N-{3-[(DIMETHYLAMINO)METHYL]PHENYL}-2- HETNAM 2 F9A (TRIFLUOROMETHYL)BENZAMIDE HETNAM EPH L-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL- HETNAM 2 EPH PHOSPHATIDYLETHANOLAMINE HETSYN HEM HEME FORMUL 5 FAD C27 H33 N9 O15 P2 FORMUL 6 MLI C3 H2 O4 2- FORMUL 7 FES FE2 S2 FORMUL 8 SF4 FE4 S4 FORMUL 9 F3S FE3 S4 FORMUL 10 HEM C34 H32 FE N4 O4 FORMUL 11 F9A C17 H17 F3 N2 O FORMUL 12 EPH C39 H68 N O8 P HELIX 1 1 GLY A 28 GLY A 42 1 15 HELIX 2 2 PHE A 52 ALA A 61 5 10 HELIX 3 3 ASN A 76 SER A 88 1 13 HELIX 4 4 ASP A 93 GLY A 115 1 23 HELIX 5 5 LYS A 137 LYS A 140 5 4 HELIX 6 6 ARG A 153 LEU A 167 1 15 HELIX 7 7 TYR A 217 TYR A 221 5 5 HELIX 8 8 GLY A 232 ARG A 240 1 9 HELIX 9 9 GLU A 267 GLY A 273 1 7 HELIX 10 10 PHE A 284 ALA A 289 1 6 HELIX 11 11 SER A 297 GLU A 311 1 15 HELIX 12 12 GLU A 332 ARG A 337 1 6 HELIX 13 13 PRO A 339 PHE A 348 1 10 HELIX 14 14 ASN A 413 CYS A 433 1 21 HELIX 15 15 GLY A 447 PHE A 459 1 13 HELIX 16 16 THR A 466 ALA A 481 1 16 HELIX 17 17 VAL A 486 ASP A 503 1 18 HELIX 18 18 ASN A 517 ARG A 543 1 27 HELIX 19 19 MET B 43 GLU B 54 1 12 HELIX 20 20 LEU B 115 ILE B 125 1 11 HELIX 21 21 SER B 145 LYS B 151 1 7 HELIX 22 22 CYS B 164 SER B 167 5 4 HELIX 23 23 CYS B 168 ASN B 174 1 7 HELIX 24 24 GLY B 180 TRP B 190 1 11 HELIX 25 25 PHE B 198 LYS B 205 1 8 HELIX 26 26 MET B 219 CYS B 225 1 7 HELIX 27 27 ASN B 230 TYR B 245 1 16 HELIX 28 28 THR C 7 GLY C 21 1 15 HELIX 29 29 SER C 36 LEU C 66 1 31 HELIX 30 30 ASN C 69 LYS C 78 1 10 HELIX 31 31 THR C 85 LEU C 113 1 29 HELIX 32 32 THR C 118 ALA C 142 1 25 HELIX 33 33 LYS D 37 ASN D 63 1 27 HELIX 34 34 CYS D 65 VAL D 92 1 28 HELIX 35 35 GLY D 94 ASP D 123 1 30 HELIX 36 36 GLY D 125 LYS D 135 1 11 SHEET 1 A 4 HIS A 18 GLU A 19 0 SHEET 2 A 4 ILE A 202 ARG A 206 1 O ARG A 206 N HIS A 18 SHEET 3 A 4 GLU A 188 CYS A 196 -1 N ALA A 194 O HIS A 203 SHEET 4 A 4 TYR A 177 GLU A 185 -1 N LEU A 183 O ARG A 190 SHEET 1 B 6 SER A 172 VAL A 175 0 SHEET 2 B 6 THR A 45 THR A 49 1 N CYS A 47 O PHE A 174 SHEET 3 B 6 ALA A 22 VAL A 25 1 N ALA A 22 O ALA A 46 SHEET 4 B 6 ASN A 209 VAL A 212 1 O VAL A 211 N VAL A 25 SHEET 5 B 6 GLN A 386 ALA A 395 1 O TYR A 394 N THR A 210 SHEET 6 B 6 GLN A 378 VAL A 383 -1 N VAL A 379 O VAL A 390 SHEET 1 C 3 ILE A 65 ASN A 66 0 SHEET 2 C 3 GLN A 143 CYS A 148 -1 O CYS A 148 N ILE A 65 SHEET 3 C 3 GLN A 128 SER A 135 -1 N ARG A 129 O CYS A 147 SHEET 1 D 3 CYS A 245 GLN A 246 0 SHEET 2 D 3 LYS A 582 VAL A 588 -1 O SER A 586 N CYS A 245 SHEET 3 D 3 VAL A 595 PRO A 601 -1 O ARG A 600 N HIS A 583 SHEET 1 E 2 VAL A 251 HIS A 254 0 SHEET 2 E 2 THR A 363 ASN A 367 -1 O TYR A 366 N GLN A 252 SHEET 1 F 2 ILE A 275 LEU A 276 0 SHEET 2 F 2 LEU A 324 GLN A 325 -1 O GLN A 325 N ILE A 275 SHEET 1 G 2 ILE A 371 PRO A 372 0 SHEET 2 G 2 ALA A 400 CYS A 401 1 O CYS A 401 N ILE A 371 SHEET 1 H 2 ILE A 464 ARG A 465 0 SHEET 2 H 2 LEU A 507 LYS A 508 1 O LYS A 508 N ILE A 464 SHEET 1 I 2 PHE A 484 ARG A 485 0 SHEET 2 I 2 ALA A 551 ARG A 552 1 O ALA A 551 N ARG A 485 SHEET 1 J 5 HIS B 29 ASP B 36 0 SHEET 2 J 5 ILE B 11 ARG B 18 -1 N ARG B 18 O HIS B 29 SHEET 3 J 5 SER B 97 TYR B 100 1 O SER B 97 N ALA B 15 SHEET 4 J 5 ALA B 74 ILE B 77 -1 N ASN B 76 O TYR B 100 SHEET 5 J 5 ASN B 81 LEU B 83 -1 O THR B 82 N MET B 75 SHEET 1 K 2 VAL B 107 LYS B 109 0 SHEET 2 K 2 VAL B 112 PRO B 113 -1 O VAL B 112 N ILE B 108 LINK NE2 HIS A 57 C8M FAD A 700 1555 1555 2.12 LINK SG CYS B 73 FE2 FES B 302 1555 1555 1.95 LINK SG CYS B 161 FE2 SF4 B 303 1555 1555 2.11 LINK SG CYS B 65 FE1 FES B 302 1555 1555 2.12 LINK SG CYS B 168 FE4 F3S B 304 1555 1555 2.13 LINK SG CYS B 164 FE1 SF4 B 303 1555 1555 2.14 LINK NE2 HIS C 101 FE HEM C1305 1555 1555 2.16 LINK NE2 HIS D 79 FE HEM C1305 1555 1555 2.18 LINK SG CYS B 70 FE1 FES B 302 1555 1555 2.40 LINK SG CYS B 158 FE3 SF4 B 303 1555 1555 2.43 LINK SG CYS B 215 FE1 F3S B 304 1555 1555 2.49 LINK SG CYS B 225 FE4 SF4 B 303 1555 1555 2.51 SITE 1 AC1 36 GLY A 26 ALA A 27 GLY A 28 GLY A 29 SITE 2 AC1 36 ALA A 30 VAL A 48 THR A 49 LYS A 50 SITE 3 AC1 36 LEU A 51 SER A 56 HIS A 57 THR A 58 SITE 4 AC1 36 ALA A 60 ALA A 61 GLN A 62 GLY A 63 SITE 5 AC1 36 GLY A 64 TYR A 177 PHE A 178 ALA A 179 SITE 6 AC1 36 ALA A 213 GLY A 215 THR A 225 SER A 226 SITE 7 AC1 36 ASP A 233 LEU A 264 HIS A 365 TYR A 366 SITE 8 AC1 36 GLU A 398 ARG A 409 ALA A 412 ASN A 413 SITE 9 AC1 36 SER A 414 LEU A 415 LEU A 418 MLI A 701 SITE 1 AC2 8 SER B 64 CYS B 65 ARG B 66 GLY B 68 SITE 2 AC2 8 CYS B 70 GLY B 71 CYS B 73 CYS B 85 SITE 1 AC3 9 CYS B 158 LEU B 160 CYS B 161 ALA B 162 SITE 2 AC3 9 CYS B 164 ALA B 182 CYS B 225 PRO B 226 SITE 3 AC3 9 PRO B 231 SITE 1 AC4 10 CYS B 168 TYR B 178 PRO B 181 CYS B 215 SITE 2 AC4 10 THR B 217 ILE B 218 MET B 219 ASN B 220 SITE 3 AC4 10 CYS B 221 ILE B 235 SITE 1 AC5 12 GLN A 62 GLY A 63 PHE A 131 HIS A 254 SITE 2 AC5 12 LEU A 264 THR A 266 GLU A 267 ARG A 298 SITE 3 AC5 12 HIS A 365 ARG A 409 ALA A 412 FAD A 700 SITE 1 AC6 17 HIS B 216 HIS C 45 ARG C 46 GLY C 49 SITE 2 AC6 17 LEU C 52 SER C 53 HIS C 101 THR C 102 SITE 3 AC6 17 HIS C 108 ARG D 47 SER D 50 LEU D 53 SITE 4 AC6 17 LEU D 54 LEU D 57 HIS D 79 GLY D 83 SITE 5 AC6 17 ILE D 84 SITE 1 AC7 9 PRO B 169 SER B 170 TRP B 173 HIS B 216 SITE 2 AC7 9 TRP C 35 SER C 42 ILE C 43 ARG C 46 SITE 3 AC7 9 TYR D 91 SITE 1 AC8 6 MET C 143 ALA D 60 TYR D 61 LYS D 99 SITE 2 AC8 6 CYS D 127 TRP D 134 CRYST1 71.505 83.751 294.959 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013985 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011940 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003390 0.00000