PDB Short entry for 3AH8 HEADER SIGNALING PROTEIN/INHIBITOR 20-APR-10 3AH8 TITLE STRUCTURE OF HETEROTRIMERIC G PROTEIN GALPHA-Q BETA GAMMA IN COMPLEX TITLE 2 WITH AN INHIBITOR YM-254890 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GUANINE NUCLEOTIDE-BINDING PROTEIN G(I) SUBUNIT ALPHA- COMPND 3 1/GUANINE NUCLEOTIDE-BINDING PROTEIN G(Q) SUBUNIT ALPHA CHIMERIC COMPND 4 PROTEIN; COMPND 5 CHAIN: A; COMPND 6 FRAGMENT: UNP ENTRY P10824 RESIDUES 2-28, UNP ENTRY P21279 RESIDUES COMPND 7 37-359; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: GUANINE NUCLEOTIDE-BINDING PROTEIN G(I)/G(S)/G(T) SUBUNIT COMPND 11 BETA-1; COMPND 12 CHAIN: B; COMPND 13 SYNONYM: TRANSDUCIN BETA CHAIN 1; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: GUANINE NUCLEOTIDE-BINDING PROTEIN G(I)/G(S)/G(O) SUBUNIT COMPND 17 GAMMA-2; COMPND 18 CHAIN: G; COMPND 19 SYNONYM: G GAMMA-I; COMPND 20 ENGINEERED: YES; COMPND 21 MUTATION: YES; COMPND 22 MOL_ID: 4; COMPND 23 MOLECULE: YM-254890; COMPND 24 CHAIN: Y SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS, MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: RAT, MOUSE; SOURCE 4 ORGANISM_TAXID: 10116, 10090; SOURCE 5 GENE: GMHB; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HIGH FIVE CELL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 12 ORGANISM_COMMON: BOVINE; SOURCE 13 ORGANISM_TAXID: 9913; SOURCE 14 GENE: GNB1; SOURCE 15 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: HIGH FIVE CELL; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 21 ORGANISM_COMMON: BOVINE; SOURCE 22 ORGANISM_TAXID: 9913; SOURCE 23 GENE: GNG2; SOURCE 24 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 25 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 26 EXPRESSION_SYSTEM_STRAIN: HIGH FIVE CELL; SOURCE 27 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 28 MOL_ID: 4; SOURCE 29 ORGANISM_SCIENTIFIC: CHROMOBACTERIUM SP.; SOURCE 30 ORGANISM_TAXID: 306190; SOURCE 31 STRAIN: QS3666 KEYWDS HETEROTRIMERIC G PROTEIN, GTPASE, GALPHA-Q, GBETA, GGAMMA, INHIBITOR, KEYWDS 2 YM-254890, SIGNALING PROTEIN, SIGNALING PROTEIN-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.NISHIMURA,K.KITANO,J.TAKASAKI,M.TANIGUCHI,N.MIZUNO,K.TAGO, AUTHOR 2 T.HAKOSHIMA,H.ITOH REVDAT 5 30-AUG-23 3AH8 1 REMARK SEQADV LINK REVDAT 4 02-AUG-17 3AH8 1 SOURCE REMARK REVDAT 3 18-AUG-10 3AH8 1 JRNL REVDAT 2 28-JUL-10 3AH8 1 JRNL REVDAT 1 21-JUL-10 3AH8 0 JRNL AUTH A.NISHIMURA,K.KITANO,J.TAKASAKI,M.TANIGUCHI,N.MIZUNO,K.TAGO, JRNL AUTH 2 T.HAKOSHIMA,H.ITOH JRNL TITL STRUCTURAL BASIS FOR THE SPECIFIC INHIBITION OF JRNL TITL 2 HETEROTRIMERIC GQ PROTEIN BY A SMALL MOLECULE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 107 13666 2010 JRNL REFN ISSN 0027-8424 JRNL PMID 20639466 JRNL DOI 10.1073/PNAS.1003553107 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 3 NUMBER OF REFLECTIONS : 19018 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.262 REMARK 3 R VALUE (WORKING SET) : 0.259 REMARK 3 FREE R VALUE : 0.315 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 973 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5799 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 91.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3AH8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000029250. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19018 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.52600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 2BCJ AND 1GP2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7% PEG 4000, 30% (V/V) GLYCEROL, 70 MM REMARK 280 ACETATE-NAOH, PH 5.1, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 86.66800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 86.66800 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.47300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 86.66800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 15.23650 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 86.66800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 45.70950 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 86.66800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 86.66800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 30.47300 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 86.66800 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 45.70950 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 86.66800 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 15.23650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, G, Y REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 REMARK 400 THE YM-254890 IS CYCLIC DEPSIPEPTIDE, A MEMBER OF INHIBITOR CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: YM-254890 REMARK 400 CHAIN: Y REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: NULL REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 5 REMARK 465 ALA A 6 REMARK 465 MET A 7 REMARK 465 GLY A 8 REMARK 465 CYS A 9 REMARK 465 THR A 10 REMARK 465 LEU A 11 REMARK 465 SER A 12 REMARK 465 GLU A 355 REMARK 465 TYR A 356 REMARK 465 ASN A 357 REMARK 465 LEU A 358 REMARK 465 VAL A 359 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLU B 3 REMARK 465 LEU B 4 REMARK 465 ASP B 5 REMARK 465 GLN B 6 REMARK 465 LEU B 7 REMARK 465 ARG B 8 REMARK 465 GLN B 9 REMARK 465 GLU B 10 REMARK 465 GLY G 1 REMARK 465 ALA G 2 REMARK 465 MET G 3 REMARK 465 ASP G 4 REMARK 465 PRO G 5 REMARK 465 GLU G 6 REMARK 465 PHE G 7 REMARK 465 MET G 8 REMARK 465 ALA G 9 REMARK 465 SER G 10 REMARK 465 ASN G 11 REMARK 465 ASN G 12 REMARK 465 THR G 13 REMARK 465 ALA G 14 REMARK 465 SER G 15 REMARK 465 ILE G 16 REMARK 465 ALA G 17 REMARK 465 PHE G 68 REMARK 465 ARG G 69 REMARK 465 GLU G 70 REMARK 465 LYS G 71 REMARK 465 LYS G 72 REMARK 465 PHE G 73 REMARK 465 PHE G 74 REMARK 465 SER G 75 REMARK 465 ALA G 76 REMARK 465 ILE G 77 REMARK 465 LEU G 78 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR B 274 O VAL B 315 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 15 CG ASP A 15 OD2 0.204 REMARK 500 GLU G 65 CG GLU G 65 CD 0.095 REMARK 500 GLU G 65 CD GLU G 65 OE2 -0.100 REMARK 500 ASN G 66 CB ASN G 66 CG 0.156 REMARK 500 ASN G 66 CG ASN G 66 ND2 0.399 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 15 CB - CG - OD2 ANGL. DEV. = -7.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 15 -165.11 -166.74 REMARK 500 LYS A 16 19.42 58.00 REMARK 500 THR A 47 -173.89 -65.19 REMARK 500 ASP A 69 -50.39 -29.63 REMARK 500 ASP A 117 100.85 -56.31 REMARK 500 VAL A 118 -57.79 -27.44 REMARK 500 LYS A 120 5.07 -175.42 REMARK 500 SER A 122 -76.18 -80.57 REMARK 500 GLU A 150 -89.47 -67.91 REMARK 500 ASP A 165 -76.69 -35.71 REMARK 500 LEU A 180 1.45 -63.45 REMARK 500 PRO A 185 106.01 -48.46 REMARK 500 GLN A 197 -83.84 20.79 REMARK 500 ARG A 214 4.22 -63.70 REMARK 500 ASN A 222 63.26 32.63 REMARK 500 LEU A 239 86.40 57.83 REMARK 500 SER A 242 29.89 -76.18 REMARK 500 TYR A 285 -66.54 -99.55 REMARK 500 ASP A 290 21.81 -75.34 REMARK 500 ASP A 319 122.84 140.61 REMARK 500 THR A 347 1.35 -66.39 REMARK 500 GLU B 12 -12.41 -148.65 REMARK 500 ASN B 16 47.05 -81.06 REMARK 500 ASN B 35 -47.54 -150.31 REMARK 500 ARG B 68 -49.02 -130.19 REMARK 500 ALA B 73 103.46 -166.19 REMARK 500 GLN B 75 4.04 -65.79 REMARK 500 THR B 87 -11.19 147.56 REMARK 500 SER B 98 4.22 -65.51 REMARK 500 TRP B 99 66.78 -103.19 REMARK 500 MET B 101 -4.28 -140.03 REMARK 500 LEU B 117 -6.35 -52.98 REMARK 500 LEU B 126 -108.50 -76.05 REMARK 500 LYS B 127 108.34 -57.23 REMARK 500 ASN B 132 -96.09 -129.29 REMARK 500 LEU B 139 78.29 -1.58 REMARK 500 ASP B 154 0.70 -64.09 REMARK 500 ASP B 163 35.43 -74.84 REMARK 500 THR B 184 -65.63 -95.39 REMARK 500 LEU B 198 137.13 -175.52 REMARK 500 GLU B 226 32.37 -91.32 REMARK 500 SER B 227 151.27 173.76 REMARK 500 ASP B 228 117.35 -6.46 REMARK 500 PRO B 236 -48.10 -25.05 REMARK 500 ASP B 247 4.94 -69.17 REMARK 500 ALA B 248 -4.94 80.16 REMARK 500 SER B 265 -165.44 -74.25 REMARK 500 HIS B 266 127.06 160.10 REMARK 500 ASN B 268 -14.77 64.67 REMARK 500 ASP B 291 28.48 -75.00 REMARK 500 REMARK 500 THIS ENTRY HAS 60 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN Y OF YM-254890 DBREF 3AH8 A 8 34 UNP P10824 GNAI1_RAT 2 28 DBREF 3AH8 A 37 359 UNP P21279 GNAQ_MOUSE 37 359 DBREF 3AH8 B 1 340 UNP P62871 GBB1_BOVIN 1 340 DBREF 3AH8 G 8 78 UNP P63212 GBG2_BOVIN 1 71 DBREF 3AH8 Y 1 9 PDB 3AH8 3AH8 1 9 SEQADV 3AH8 GLY A 5 UNP P10824 EXPRESSION TAG SEQADV 3AH8 ALA A 6 UNP P10824 EXPRESSION TAG SEQADV 3AH8 MET A 7 UNP P10824 EXPRESSION TAG SEQADV 3AH8 ARG A 35 UNP P10824 LINKER SEQADV 3AH8 SER A 36 UNP P10824 LINKER SEQADV 3AH8 GLY G 1 UNP P63212 EXPRESSION TAG SEQADV 3AH8 ALA G 2 UNP P63212 EXPRESSION TAG SEQADV 3AH8 MET G 3 UNP P63212 EXPRESSION TAG SEQADV 3AH8 ASP G 4 UNP P63212 EXPRESSION TAG SEQADV 3AH8 PRO G 5 UNP P63212 EXPRESSION TAG SEQADV 3AH8 GLU G 6 UNP P63212 EXPRESSION TAG SEQADV 3AH8 PHE G 7 UNP P63212 EXPRESSION TAG SEQADV 3AH8 SER G 75 UNP P63212 CYS 68 ENGINEERED MUTATION SEQRES 1 A 355 GLY ALA MET GLY CYS THR LEU SER ALA GLU ASP LYS ALA SEQRES 2 A 355 ALA VAL GLU ARG SER LYS MET ILE ASP ARG ASN LEU ARG SEQRES 3 A 355 GLU ASP GLY GLU ARG SER ARG ARG GLU LEU LYS LEU LEU SEQRES 4 A 355 LEU LEU GLY THR GLY GLU SER GLY LYS SER THR PHE ILE SEQRES 5 A 355 LYS GLN MET ARG ILE ILE HIS GLY SER GLY TYR SER ASP SEQRES 6 A 355 GLU ASP LYS ARG GLY PHE THR LYS LEU VAL TYR GLN ASN SEQRES 7 A 355 ILE PHE THR ALA MET GLN ALA MET ILE ARG ALA MET ASP SEQRES 8 A 355 THR LEU LYS ILE PRO TYR LYS TYR GLU HIS ASN LYS ALA SEQRES 9 A 355 HIS ALA GLN LEU VAL ARG GLU VAL ASP VAL GLU LYS VAL SEQRES 10 A 355 SER ALA PHE GLU ASN PRO TYR VAL ASP ALA ILE LYS SER SEQRES 11 A 355 LEU TRP ASN ASP PRO GLY ILE GLN GLU CYS TYR ASP ARG SEQRES 12 A 355 ARG ARG GLU TYR GLN LEU SER ASP SER THR LYS TYR TYR SEQRES 13 A 355 LEU ASN ASP LEU ASP ARG VAL ALA ASP PRO SER TYR LEU SEQRES 14 A 355 PRO THR GLN GLN ASP VAL LEU ARG VAL ARG VAL PRO THR SEQRES 15 A 355 THR GLY ILE ILE GLU TYR PRO PHE ASP LEU GLN SER VAL SEQRES 16 A 355 ILE PHE ARG MET VAL ASP VAL GLY GLY GLN ARG SER GLU SEQRES 17 A 355 ARG ARG LYS TRP ILE HIS CYS PHE GLU ASN VAL THR SER SEQRES 18 A 355 ILE MET PHE LEU VAL ALA LEU SER GLU TYR ASP GLN VAL SEQRES 19 A 355 LEU VAL GLU SER ASP ASN GLU ASN ARG MET GLU GLU SER SEQRES 20 A 355 LYS ALA LEU PHE ARG THR ILE ILE THR TYR PRO TRP PHE SEQRES 21 A 355 GLN ASN SER SER VAL ILE LEU PHE LEU ASN LYS LYS ASP SEQRES 22 A 355 LEU LEU GLU GLU LYS ILE MET TYR SER HIS LEU VAL ASP SEQRES 23 A 355 TYR PHE PRO GLU TYR ASP GLY PRO GLN ARG ASP ALA GLN SEQRES 24 A 355 ALA ALA ARG GLU PHE ILE LEU LYS MET PHE VAL ASP LEU SEQRES 25 A 355 ASN PRO ASP SER ASP LYS ILE ILE TYR SER HIS PHE THR SEQRES 26 A 355 CYS ALA THR ASP THR GLU ASN ILE ARG PHE VAL PHE ALA SEQRES 27 A 355 ALA VAL LYS ASP THR ILE LEU GLN LEU ASN LEU LYS GLU SEQRES 28 A 355 TYR ASN LEU VAL SEQRES 1 B 340 MET SER GLU LEU ASP GLN LEU ARG GLN GLU ALA GLU GLN SEQRES 2 B 340 LEU LYS ASN GLN ILE ARG ASP ALA ARG LYS ALA CYS ALA SEQRES 3 B 340 ASP ALA THR LEU SER GLN ILE THR ASN ASN ILE ASP PRO SEQRES 4 B 340 VAL GLY ARG ILE GLN MET ARG THR ARG ARG THR LEU ARG SEQRES 5 B 340 GLY HIS LEU ALA LYS ILE TYR ALA MET HIS TRP GLY THR SEQRES 6 B 340 ASP SER ARG LEU LEU VAL SER ALA SER GLN ASP GLY LYS SEQRES 7 B 340 LEU ILE ILE TRP ASP SER TYR THR THR ASN LYS VAL HIS SEQRES 8 B 340 ALA ILE PRO LEU ARG SER SER TRP VAL MET THR CYS ALA SEQRES 9 B 340 TYR ALA PRO SER GLY ASN TYR VAL ALA CYS GLY GLY LEU SEQRES 10 B 340 ASP ASN ILE CYS SER ILE TYR ASN LEU LYS THR ARG GLU SEQRES 11 B 340 GLY ASN VAL ARG VAL SER ARG GLU LEU ALA GLY HIS THR SEQRES 12 B 340 GLY TYR LEU SER CYS CYS ARG PHE LEU ASP ASP ASN GLN SEQRES 13 B 340 ILE VAL THR SER SER GLY ASP THR THR CYS ALA LEU TRP SEQRES 14 B 340 ASP ILE GLU THR GLY GLN GLN THR THR THR PHE THR GLY SEQRES 15 B 340 HIS THR GLY ASP VAL MET SER LEU SER LEU ALA PRO ASP SEQRES 16 B 340 THR ARG LEU PHE VAL SER GLY ALA CYS ASP ALA SER ALA SEQRES 17 B 340 LYS LEU TRP ASP VAL ARG GLU GLY MET CYS ARG GLN THR SEQRES 18 B 340 PHE THR GLY HIS GLU SER ASP ILE ASN ALA ILE CYS PHE SEQRES 19 B 340 PHE PRO ASN GLY ASN ALA PHE ALA THR GLY SER ASP ASP SEQRES 20 B 340 ALA THR CYS ARG LEU PHE ASP LEU ARG ALA ASP GLN GLU SEQRES 21 B 340 LEU MET THR TYR SER HIS ASP ASN ILE ILE CYS GLY ILE SEQRES 22 B 340 THR SER VAL SER PHE SER LYS SER GLY ARG LEU LEU LEU SEQRES 23 B 340 ALA GLY TYR ASP ASP PHE ASN CYS ASN VAL TRP ASP ALA SEQRES 24 B 340 LEU LYS ALA ASP ARG ALA GLY VAL LEU ALA GLY HIS ASP SEQRES 25 B 340 ASN ARG VAL SER CYS LEU GLY VAL THR ASP ASP GLY MET SEQRES 26 B 340 ALA VAL ALA THR GLY SER TRP ASP SER PHE LEU LYS ILE SEQRES 27 B 340 TRP ASN SEQRES 1 G 78 GLY ALA MET ASP PRO GLU PHE MET ALA SER ASN ASN THR SEQRES 2 G 78 ALA SER ILE ALA GLN ALA ARG LYS LEU VAL GLU GLN LEU SEQRES 3 G 78 LYS MET GLU ALA ASN ILE ASP ARG ILE LYS VAL SER LYS SEQRES 4 G 78 ALA ALA ALA ASP LEU MET ALA TYR CYS GLU ALA HIS ALA SEQRES 5 G 78 LYS GLU ASP PRO LEU LEU THR PRO VAL PRO ALA SER GLU SEQRES 6 G 78 ASN PRO PHE ARG GLU LYS LYS PHE PHE SER ALA ILE LEU SEQRES 1 Y 9 ACE HL2 HL2 OTH THC HF2 DAM ALA MAA MODRES 3AH8 HL2 Y 2 LEU MODRES 3AH8 HL2 Y 3 LEU MODRES 3AH8 OTH Y 4 THR N,O-DIMETHYL-L-THREONINE MODRES 3AH8 THC Y 5 THR N-METHYLCARBONYLTHREONINE MODRES 3AH8 MAA Y 9 ALA N-METHYL-L-ALANINE HET ACE Y 1 3 HET HL2 Y 2 9 HET HL2 Y 3 9 HET OTH Y 4 9 HET THC Y 5 10 HET HF2 Y 6 11 HET DAM Y 7 6 HET MAA Y 9 6 HET GDP A 1 28 HETNAM ACE ACETYL GROUP HETNAM HL2 (2S,3R)-2-AMINO-3-HYDROXY-4-METHYLPENTANOIC ACID HETNAM OTH N,O-DIMETHYL-L-THREONINE HETNAM THC N-METHYLCARBONYLTHREONINE HETNAM HF2 (2R)-2-HYDROXY-3-PHENYLPROPANOIC ACID HETNAM DAM N-METHYL-ALPHA-BETA-DEHYDROALANINE HETNAM MAA N-METHYL-L-ALANINE HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETSYN HL2 BETA-HYDROXYLEUCINE FORMUL 4 ACE C2 H4 O FORMUL 4 HL2 2(C6 H13 N O3) FORMUL 4 OTH C6 H13 N O3 FORMUL 4 THC C6 H11 N O4 FORMUL 4 HF2 C9 H10 O3 FORMUL 4 DAM C4 H7 N O2 FORMUL 4 MAA C4 H9 N O2 FORMUL 5 GDP C10 H15 N5 O11 P2 HELIX 1 1 ALA A 18 ARG A 38 1 21 HELIX 2 2 GLY A 51 HIS A 63 1 13 HELIX 3 3 SER A 68 LEU A 97 1 30 HELIX 4 4 HIS A 105 GLU A 115 1 11 HELIX 5 5 GLU A 125 ASP A 138 1 14 HELIX 6 6 ASP A 138 ARG A 147 1 10 HELIX 7 7 SER A 156 ASN A 162 1 7 HELIX 8 8 ASP A 163 ALA A 168 1 6 HELIX 9 9 THR A 175 LEU A 180 1 6 HELIX 10 10 GLU A 212 GLU A 221 5 10 HELIX 11 11 SER A 233 GLN A 237 5 5 HELIX 12 12 ASN A 246 TYR A 261 1 16 HELIX 13 13 PRO A 262 GLN A 265 5 4 HELIX 14 14 LYS A 275 ILE A 283 1 9 HELIX 15 15 LEU A 288 PHE A 292 5 5 HELIX 16 16 ASP A 301 LEU A 316 1 16 HELIX 17 17 ASP A 333 LEU A 353 1 21 HELIX 18 18 LEU B 14 ASN B 16 5 3 HELIX 19 19 GLN B 17 ALA B 26 1 10 HELIX 20 20 THR B 29 THR B 34 1 6 HELIX 21 21 LYS G 21 ASN G 31 1 11 HELIX 22 22 LYS G 36 ALA G 50 1 15 HELIX 23 23 HIS G 51 ASP G 55 5 5 SHEET 1 A 6 ILE A 190 LEU A 196 0 SHEET 2 A 6 VAL A 199 ASP A 205 -1 O ASP A 205 N ILE A 190 SHEET 3 A 6 LEU A 40 GLY A 46 1 N LEU A 44 O VAL A 204 SHEET 4 A 6 SER A 225 ALA A 231 1 O MET A 227 N LEU A 43 SHEET 5 A 6 SER A 268 ASN A 274 1 O PHE A 272 N PHE A 228 SHEET 6 A 6 ILE A 324 PHE A 328 1 O HIS A 327 N LEU A 273 SHEET 1 B 4 THR B 47 ARG B 52 0 SHEET 2 B 4 PHE B 335 TRP B 339 -1 O ILE B 338 N ARG B 48 SHEET 3 B 4 VAL B 327 SER B 331 -1 N VAL B 327 O TRP B 339 SHEET 4 B 4 VAL B 315 VAL B 320 -1 N GLY B 319 O ALA B 328 SHEET 1 C 4 HIS B 62 TRP B 63 0 SHEET 2 C 4 LEU B 69 VAL B 71 -1 O VAL B 71 N HIS B 62 SHEET 3 C 4 LYS B 78 ASP B 83 -1 O TRP B 82 N LEU B 70 SHEET 4 C 4 LYS B 89 PRO B 94 -1 O ILE B 93 N LEU B 79 SHEET 1 D 4 VAL B 100 CYS B 103 0 SHEET 2 D 4 TYR B 111 GLY B 116 -1 O GLY B 115 N MET B 101 SHEET 3 D 4 SER B 122 ASN B 125 -1 O SER B 122 N CYS B 114 SHEET 4 D 4 ARG B 134 ARG B 137 -1 O SER B 136 N ILE B 123 SHEET 1 E 4 LEU B 146 ASP B 153 0 SHEET 2 E 4 GLN B 156 SER B 161 -1 O GLN B 156 N LEU B 152 SHEET 3 E 4 THR B 165 ASP B 170 -1 O ALA B 167 N THR B 159 SHEET 4 E 4 GLN B 175 THR B 181 -1 O PHE B 180 N CYS B 166 SHEET 1 F 4 SER B 191 LEU B 192 0 SHEET 2 F 4 PHE B 199 SER B 201 -1 O VAL B 200 N SER B 191 SHEET 3 F 4 SER B 207 TRP B 211 -1 O TRP B 211 N PHE B 199 SHEET 4 F 4 CYS B 218 THR B 223 -1 O GLN B 220 N LEU B 210 SHEET 1 G 4 ILE B 229 PHE B 234 0 SHEET 2 G 4 ALA B 240 SER B 245 -1 O GLY B 244 N ALA B 231 SHEET 3 G 4 CYS B 250 ASP B 254 -1 O PHE B 253 N PHE B 241 SHEET 4 G 4 GLN B 259 TYR B 264 -1 O TYR B 264 N CYS B 250 SHEET 1 H 4 ILE B 273 PHE B 278 0 SHEET 2 H 4 LEU B 284 TYR B 289 -1 O LEU B 286 N SER B 277 SHEET 3 H 4 ASN B 293 ASP B 298 -1 O ASN B 295 N ALA B 287 SHEET 4 H 4 ARG B 304 ALA B 309 -1 O LEU B 308 N CYS B 294 LINK C ACE Y 1 N HL2 Y 2 1555 1555 1.34 LINK C HL2 Y 2 OH HL2 Y 3 1555 1555 1.45 LINK C HL2 Y 3 N OTH Y 4 1555 1555 1.34 LINK N HL2 Y 3 C MAA Y 9 1555 1555 1.34 LINK C OTH Y 4 OG1 THC Y 5 1555 1555 1.45 LINK C THC Y 5 OA HF2 Y 6 1555 1555 1.46 LINK C HF2 Y 6 N DAM Y 7 1555 1555 1.36 LINK C DAM Y 7 N ALA Y 8 1555 1555 1.34 LINK C ALA Y 8 N MAA Y 9 1555 1555 1.35 CISPEP 1 HL2 Y 3 OTH Y 4 0 -1.82 CISPEP 2 ALA Y 8 MAA Y 9 0 0.62 SITE 1 AC1 18 THR A 47 GLY A 48 GLU A 49 SER A 50 SITE 2 AC1 18 GLY A 51 LYS A 52 SER A 53 THR A 54 SITE 3 AC1 18 SER A 156 LEU A 180 ARG A 181 ARG A 183 SITE 4 AC1 18 ASN A 274 LYS A 275 ASP A 277 CYS A 330 SITE 5 AC1 18 ALA A 331 THR A 332 SITE 1 AC2 13 LYS A 57 ARG A 60 TYR A 67 ASP A 71 SITE 2 AC2 13 GLY A 74 PHE A 75 VAL A 184 THR A 187 SITE 3 AC2 13 ILE A 189 ILE A 190 GLU A 191 TYR A 192 SITE 4 AC2 13 ARG B 96 CRYST1 173.336 173.336 60.946 90.00 90.00 90.00 I 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005769 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005769 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016408 0.00000