PDB Short entry for 3AHU HEADER TRANSLATION/RNA 29-APR-10 3AHU TITLE CRYSTAL STRUCTURE OF YMAH (HFQ) FROM BACILLUS SUBTILIS IN COMPLEX WITH TITLE 2 AN RNA APTAMER. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN HFQ; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 5'-R(*AP*GP*AP*GP*AP*G)-3'; COMPND 7 CHAIN: X; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: BSU17340, HFQ, YMAH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES KEYWDS SM-LIKE MOTIF, PROTEIN-RNA COMPLEX, TRANSLATION-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.BABA,T.SOMEYA,T.KUMASAKA,G.KAWAI,K.NAKAMURA REVDAT 2 01-NOV-23 3AHU 1 SEQADV REVDAT 1 13-JUL-11 3AHU 0 JRNL AUTH T.SOMEYA,S.BABA,M.FUJIMOTO,T.KUMASAKA,G.KAWAI,K.NAKAMURA JRNL TITL CRYSTAL STRUCTURE OF YMAH (HFQ) FROM BACILLUS SUBTILIS IN JRNL TITL 2 COMPLEX WITH AN RNA APTAMER. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.BABA,T.SOMEYA,G.KAWAI,K.NAKAMURA,T.KUMASAKA REMARK 1 TITL EXPRESSION, CRYSTALLIZATION AND PRELIMINARY CRYSTALLOGRAPHIC REMARK 1 TITL 2 ANALYSIS OF RNA-BINDING PROTEIN HFQ (YMAH) FROM BACILLUS REMARK 1 TITL 3 SUBTILIS IN COMPLEX WITH AN RNA APTAMER. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 66 563 2010 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 20445260 REMARK 1 DOI 10.1107/S1744309110009942 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 12044 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.259 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1225 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1629 REMARK 3 NUCLEIC ACID ATOMS : 132 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 25 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3AHU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1000029272. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : FIXED EXIT SI 111 DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12626 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.03300 REMARK 200 R SYM (I) : 0.02900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 45.7500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.30700 REMARK 200 R SYM FOR SHELL (I) : 0.24800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.840 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1KQ2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01M COBALT (II) CHLORIDE, 0.2M MES, REMARK 280 1.8M AMMONIUM SULFATE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: F 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z+1/2 REMARK 290 7555 -X,Y+1/2,-Z+1/2 REMARK 290 8555 X,-Y+1/2,-Z+1/2 REMARK 290 9555 X+1/2,Y,Z+1/2 REMARK 290 10555 -X+1/2,-Y,Z+1/2 REMARK 290 11555 -X+1/2,Y,-Z+1/2 REMARK 290 12555 X+1/2,-Y,-Z+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z REMARK 290 14555 -X+1/2,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y+1/2,-Z REMARK 290 16555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.25200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 57.45900 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.25200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 57.45900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 46.25200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 57.45900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 46.25200 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 57.45900 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 45.96050 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 57.45900 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 45.96050 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 57.45900 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 45.96050 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 57.45900 REMARK 290 SMTRY1 12 1.000000 0.000000 0.000000 45.96050 REMARK 290 SMTRY2 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 57.45900 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 45.96050 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 46.25200 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 45.96050 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 46.25200 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 45.96050 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 46.25200 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 45.96050 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 46.25200 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEPTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 -1.000000 0.000000 0.000000 -91.92100 REMARK 350 BIOMT2 1 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, X REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 LEU A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 PRO A 3 REMARK 465 ILE A 4 REMARK 465 GLU A 71 REMARK 465 LEU A 72 REMARK 465 GLU A 73 REMARK 465 GLY B -4 REMARK 465 PRO B -3 REMARK 465 LEU B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 PRO B 3 REMARK 465 ILE B 4 REMARK 465 GLU B 71 REMARK 465 LEU B 72 REMARK 465 GLU B 73 REMARK 465 GLY C -4 REMARK 465 PRO C -3 REMARK 465 LEU C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 LYS C 2 REMARK 465 PRO C 3 REMARK 465 ILE C 4 REMARK 465 GLU C 71 REMARK 465 LEU C 72 REMARK 465 GLU C 73 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 A X 1 N3 A X 1 C4 0.047 REMARK 500 A X 1 N9 A X 1 C4 0.043 REMARK 500 G X 2 O5' G X 2 C5' -0.079 REMARK 500 A X 3 N3 A X 3 C4 0.036 REMARK 500 G X 4 N3 G X 4 C4 0.064 REMARK 500 G X 4 C6 G X 4 N1 0.044 REMARK 500 G X 6 C6 G X 6 N1 0.046 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 A X 1 C1' - O4' - C4' ANGL. DEV. = -4.5 DEGREES REMARK 500 A X 1 C3' - C2' - C1' ANGL. DEV. = -4.2 DEGREES REMARK 500 A X 1 N1 - C2 - N3 ANGL. DEV. = -3.5 DEGREES REMARK 500 A X 1 C2 - N3 - C4 ANGL. DEV. = 3.9 DEGREES REMARK 500 A X 1 C8 - N9 - C4 ANGL. DEV. = 3.3 DEGREES REMARK 500 A X 1 N9 - C4 - C5 ANGL. DEV. = -2.7 DEGREES REMARK 500 A X 1 C5 - C6 - N6 ANGL. DEV. = -5.1 DEGREES REMARK 500 G X 2 O5' - C5' - C4' ANGL. DEV. = -8.8 DEGREES REMARK 500 G X 2 C5' - C4' - O4' ANGL. DEV. = -10.6 DEGREES REMARK 500 G X 2 C6 - C5 - N7 ANGL. DEV. = 3.8 DEGREES REMARK 500 A X 3 O5' - P - OP1 ANGL. DEV. = -8.3 DEGREES REMARK 500 A X 3 O4' - C1' - N9 ANGL. DEV. = 9.2 DEGREES REMARK 500 A X 3 C5 - N7 - C8 ANGL. DEV. = -3.5 DEGREES REMARK 500 A X 3 N1 - C6 - N6 ANGL. DEV. = 5.2 DEGREES REMARK 500 G X 4 OP1 - P - OP2 ANGL. DEV. = 13.4 DEGREES REMARK 500 G X 4 O5' - P - OP1 ANGL. DEV. = -5.6 DEGREES REMARK 500 G X 4 O5' - C5' - C4' ANGL. DEV. = -5.4 DEGREES REMARK 500 G X 4 C4' - C3' - C2' ANGL. DEV. = -7.2 DEGREES REMARK 500 G X 4 C3' - C2' - C1' ANGL. DEV. = -7.0 DEGREES REMARK 500 G X 4 C2 - N3 - C4 ANGL. DEV. = 5.0 DEGREES REMARK 500 G X 4 N3 - C4 - C5 ANGL. DEV. = -3.7 DEGREES REMARK 500 G X 4 C5 - C6 - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 G X 4 C5 - N7 - C8 ANGL. DEV. = 5.6 DEGREES REMARK 500 G X 4 N7 - C8 - N9 ANGL. DEV. = -7.1 DEGREES REMARK 500 G X 4 C8 - N9 - C4 ANGL. DEV. = 4.4 DEGREES REMARK 500 G X 4 N3 - C4 - N9 ANGL. DEV. = 5.4 DEGREES REMARK 500 G X 4 C5 - C6 - O6 ANGL. DEV. = -4.6 DEGREES REMARK 500 A X 5 O3' - P - O5' ANGL. DEV. = 15.2 DEGREES REMARK 500 A X 5 OP1 - P - OP2 ANGL. DEV. = 12.0 DEGREES REMARK 500 A X 5 O5' - P - OP1 ANGL. DEV. = -5.9 DEGREES REMARK 500 A X 5 C3' - C2' - C1' ANGL. DEV. = -5.7 DEGREES REMARK 500 A X 5 O4' - C1' - N9 ANGL. DEV. = -7.0 DEGREES REMARK 500 G X 6 C5' - C4' - O4' ANGL. DEV. = 7.3 DEGREES REMARK 500 G X 6 C1' - O4' - C4' ANGL. DEV. = -5.8 DEGREES REMARK 500 G X 6 O4' - C1' - N9 ANGL. DEV. = 5.6 DEGREES REMARK 500 G X 6 N1 - C2 - N3 ANGL. DEV. = -4.7 DEGREES REMARK 500 G X 6 C2 - N3 - C4 ANGL. DEV. = 3.2 DEGREES REMARK 500 G X 6 N1 - C2 - N2 ANGL. DEV. = 8.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 16 -70.04 -56.72 REMARK 500 GLU A 17 -18.22 -47.25 REMARK 500 GLU A 48 76.16 70.59 REMARK 500 ASN A 67 160.27 -46.20 REMARK 500 GLN B 9 -71.67 -56.73 REMARK 500 ASP B 39 -159.04 -123.74 REMARK 500 GLU B 46 98.55 -67.46 REMARK 500 GLU B 48 71.64 45.22 REMARK 500 ASN C 18 37.82 38.82 REMARK 500 GLU C 48 72.51 30.65 REMARK 500 SER C 60 -60.78 -96.40 REMARK 500 GLN C 65 -80.25 -74.40 REMARK 500 REMARK 500 REMARK: NULL DBREF 3AHU A 1 73 UNP O31796 HFQ_BACSU 1 73 DBREF 3AHU B 1 73 UNP O31796 HFQ_BACSU 1 73 DBREF 3AHU C 1 73 UNP O31796 HFQ_BACSU 1 73 DBREF 3AHU X 1 6 PDB 3AHU 3AHU 1 6 SEQADV 3AHU GLY A -4 UNP O31796 EXPRESSION TAG SEQADV 3AHU PRO A -3 UNP O31796 EXPRESSION TAG SEQADV 3AHU LEU A -2 UNP O31796 EXPRESSION TAG SEQADV 3AHU GLY A -1 UNP O31796 EXPRESSION TAG SEQADV 3AHU SER A 0 UNP O31796 EXPRESSION TAG SEQADV 3AHU GLY B -4 UNP O31796 EXPRESSION TAG SEQADV 3AHU PRO B -3 UNP O31796 EXPRESSION TAG SEQADV 3AHU LEU B -2 UNP O31796 EXPRESSION TAG SEQADV 3AHU GLY B -1 UNP O31796 EXPRESSION TAG SEQADV 3AHU SER B 0 UNP O31796 EXPRESSION TAG SEQADV 3AHU GLY C -4 UNP O31796 EXPRESSION TAG SEQADV 3AHU PRO C -3 UNP O31796 EXPRESSION TAG SEQADV 3AHU LEU C -2 UNP O31796 EXPRESSION TAG SEQADV 3AHU GLY C -1 UNP O31796 EXPRESSION TAG SEQADV 3AHU SER C 0 UNP O31796 EXPRESSION TAG SEQRES 1 A 78 GLY PRO LEU GLY SER MET LYS PRO ILE ASN ILE GLN ASP SEQRES 2 A 78 GLN PHE LEU ASN GLN ILE ARG LYS GLU ASN THR TYR VAL SEQRES 3 A 78 THR VAL PHE LEU LEU ASN GLY PHE GLN LEU ARG GLY GLN SEQRES 4 A 78 VAL LYS GLY PHE ASP ASN PHE THR VAL LEU LEU GLU SER SEQRES 5 A 78 GLU GLY LYS GLN GLN LEU ILE TYR LYS HIS ALA ILE SER SEQRES 6 A 78 THR PHE ALA PRO GLN LYS ASN VAL GLN LEU GLU LEU GLU SEQRES 1 B 78 GLY PRO LEU GLY SER MET LYS PRO ILE ASN ILE GLN ASP SEQRES 2 B 78 GLN PHE LEU ASN GLN ILE ARG LYS GLU ASN THR TYR VAL SEQRES 3 B 78 THR VAL PHE LEU LEU ASN GLY PHE GLN LEU ARG GLY GLN SEQRES 4 B 78 VAL LYS GLY PHE ASP ASN PHE THR VAL LEU LEU GLU SER SEQRES 5 B 78 GLU GLY LYS GLN GLN LEU ILE TYR LYS HIS ALA ILE SER SEQRES 6 B 78 THR PHE ALA PRO GLN LYS ASN VAL GLN LEU GLU LEU GLU SEQRES 1 C 78 GLY PRO LEU GLY SER MET LYS PRO ILE ASN ILE GLN ASP SEQRES 2 C 78 GLN PHE LEU ASN GLN ILE ARG LYS GLU ASN THR TYR VAL SEQRES 3 C 78 THR VAL PHE LEU LEU ASN GLY PHE GLN LEU ARG GLY GLN SEQRES 4 C 78 VAL LYS GLY PHE ASP ASN PHE THR VAL LEU LEU GLU SER SEQRES 5 C 78 GLU GLY LYS GLN GLN LEU ILE TYR LYS HIS ALA ILE SER SEQRES 6 C 78 THR PHE ALA PRO GLN LYS ASN VAL GLN LEU GLU LEU GLU SEQRES 1 X 6 A G A G A G FORMUL 5 HOH *25(H2 O) HELIX 1 1 ASN A 5 ASN A 18 1 14 HELIX 2 2 ASN B 5 GLU B 17 1 13 HELIX 3 3 ASN C 5 GLU C 17 1 13 SHEET 1 A15 ILE A 59 PRO A 64 0 SHEET 2 A15 VAL A 21 LEU A 25 -1 N THR A 22 O ALA A 63 SHEET 3 A15 GLN A 30 PHE A 38 -1 O LEU A 31 N VAL A 23 SHEET 4 A15 THR A 42 GLU A 46 -1 O GLU A 46 N GLN A 34 SHEET 5 A15 GLN A 51 TYR A 55 -1 O GLN A 52 N LEU A 45 SHEET 6 A15 ILE B 59 PRO B 64 -1 O SER B 60 N TYR A 55 SHEET 7 A15 VAL B 21 LEU B 25 -1 N PHE B 24 O THR B 61 SHEET 8 A15 GLN B 30 PHE B 38 -1 O GLY B 33 N VAL B 21 SHEET 9 A15 THR B 42 SER B 47 -1 O GLU B 46 N GLN B 34 SHEET 10 A15 LYS B 50 TYR B 55 -1 O ILE B 54 N VAL B 43 SHEET 11 A15 ILE C 59 PRO C 64 -1 O SER C 60 N TYR B 55 SHEET 12 A15 VAL C 21 LEU C 25 -1 N THR C 22 O ALA C 63 SHEET 13 A15 GLN C 30 PHE C 38 -1 O GLY C 33 N VAL C 21 SHEET 14 A15 THR C 42 SER C 47 -1 O GLU C 46 N GLN C 34 SHEET 15 A15 LYS C 50 TYR C 55 -1 O LYS C 50 N SER C 47 CRYST1 91.921 92.504 114.918 90.00 90.00 90.00 F 2 2 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010879 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010810 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008702 0.00000