PDB Short entry for 3AL9 HEADER SIGNALING PROTEIN 28-JUL-10 3AL9 TITLE MOUSE PLEXIN A2 EXTRACELLULAR DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLEXIN-A2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SEMA AND PSI DOMAIN (UNP RESIDUES 31-561); COMPND 5 SYNONYM: PLEXIN-2, PLEX 2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_TAXID: 10090; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_CELL: HEK293S GNTI-; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PCDNA3.1/HIS-MYC KEYWDS BETA-PROPELLER, MEMBRANE PROTEIN, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.NOGI,N.YASUI,E.MIHARA,J.TAKAGI REVDAT 5 01-NOV-23 3AL9 1 HETSYN REVDAT 4 29-JUL-20 3AL9 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK SITE REVDAT 3 03-NOV-10 3AL9 1 JRNL REVDAT 2 27-OCT-10 3AL9 1 JRNL REVDAT 1 06-OCT-10 3AL9 0 JRNL AUTH T.NOGI,N.YASUI,E.MIHARA,Y.MATSUNAGA,M.NODA,N.YAMASHITA, JRNL AUTH 2 T.TOYOFUKU,S.UCHIYAMA,Y.GOSHIMA,A.KUMANOGOH,J.TAKAGI JRNL TITL STRUCTURAL BASIS FOR SEMAPHORIN SIGNALLING THROUGH THE JRNL TITL 2 PLEXIN RECEPTOR. JRNL REF NATURE V. 467 1123 2010 JRNL REFN ISSN 0028-0836 JRNL PMID 20881961 JRNL DOI 10.1038/NATURE09473 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 57811 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3075 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4271 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 224 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8118 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.81 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.84000 REMARK 3 B22 (A**2) : 0.45000 REMARK 3 B33 (A**2) : 0.39000 REMARK 3 B12 (A**2) : 0.78000 REMARK 3 B13 (A**2) : 0.19000 REMARK 3 B23 (A**2) : -0.92000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.214 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.141 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.175 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8354 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11337 ; 1.272 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1028 ; 6.520 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 376 ;34.547 ;23.564 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1378 ;14.951 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 52 ;16.839 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1246 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6348 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5136 ; 0.695 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 8304 ; 1.297 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3218 ; 1.760 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3033 ; 2.848 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3AL9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1000029389. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60889 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 42.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.28900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1SHY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24-28%(WT/VOL) PEG 3350, 0-0.2M NACL, REMARK 280 0.1M TRIS-CL PH 8.0-8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K, PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 31 REMARK 465 THR A 32 REMARK 465 THR A 33 REMARK 465 GLY A 34 REMARK 465 MET A 35 REMARK 465 PRO A 36 REMARK 465 GLN A 37 REMARK 465 ASP A 264 REMARK 465 GLY A 265 REMARK 465 MET A 266 REMARK 465 ALA A 267 REMARK 465 ILE A 268 REMARK 465 ASN A 269 REMARK 465 SER A 270 REMARK 465 ALA A 271 REMARK 465 GLY A 272 REMARK 465 ASP A 273 REMARK 465 GLU A 564 REMARK 465 ASN A 565 REMARK 465 LEU A 566 REMARK 465 TYR A 567 REMARK 465 PHE A 568 REMARK 465 GLN A 569 REMARK 465 GLY B 31 REMARK 465 THR B 32 REMARK 465 THR B 33 REMARK 465 GLY B 34 REMARK 465 MET B 35 REMARK 465 PRO B 36 REMARK 465 GLN B 37 REMARK 465 ASP B 264 REMARK 465 GLY B 265 REMARK 465 MET B 266 REMARK 465 ALA B 267 REMARK 465 ILE B 268 REMARK 465 ASN B 269 REMARK 465 SER B 270 REMARK 465 ALA B 271 REMARK 465 GLY B 272 REMARK 465 ASP B 273 REMARK 465 GLU B 564 REMARK 465 ASN B 565 REMARK 465 LEU B 566 REMARK 465 TYR B 567 REMARK 465 PHE B 568 REMARK 465 GLN B 569 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 77 30.66 76.31 REMARK 500 SER A 152 31.91 -167.85 REMARK 500 SER A 160 134.78 174.00 REMARK 500 LYS A 191 47.11 -92.75 REMARK 500 ASP A 287 74.12 -162.64 REMARK 500 ASP A 430 118.47 -161.65 REMARK 500 ASN A 550 -10.84 75.46 REMARK 500 LEU B 77 34.53 71.12 REMARK 500 SER B 160 140.64 177.71 REMARK 500 GLU B 176 121.29 -36.34 REMARK 500 LYS B 191 56.93 -96.69 REMARK 500 ASP B 287 71.42 -165.49 REMARK 500 ASP B 401 -169.62 -101.79 REMARK 500 ASN B 550 -4.13 68.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3AL8 RELATED DB: PDB DBREF 3AL9 A 31 561 UNP P70207 PLXA2_MOUSE 31 561 DBREF 3AL9 B 31 561 UNP P70207 PLXA2_MOUSE 31 561 SEQADV 3AL9 SER A 562 UNP P70207 EXPRESSION TAG SEQADV 3AL9 ARG A 563 UNP P70207 EXPRESSION TAG SEQADV 3AL9 GLU A 564 UNP P70207 EXPRESSION TAG SEQADV 3AL9 ASN A 565 UNP P70207 EXPRESSION TAG SEQADV 3AL9 LEU A 566 UNP P70207 EXPRESSION TAG SEQADV 3AL9 TYR A 567 UNP P70207 EXPRESSION TAG SEQADV 3AL9 PHE A 568 UNP P70207 EXPRESSION TAG SEQADV 3AL9 GLN A 569 UNP P70207 EXPRESSION TAG SEQADV 3AL9 SER B 562 UNP P70207 EXPRESSION TAG SEQADV 3AL9 ARG B 563 UNP P70207 EXPRESSION TAG SEQADV 3AL9 GLU B 564 UNP P70207 EXPRESSION TAG SEQADV 3AL9 ASN B 565 UNP P70207 EXPRESSION TAG SEQADV 3AL9 LEU B 566 UNP P70207 EXPRESSION TAG SEQADV 3AL9 TYR B 567 UNP P70207 EXPRESSION TAG SEQADV 3AL9 PHE B 568 UNP P70207 EXPRESSION TAG SEQADV 3AL9 GLN B 569 UNP P70207 EXPRESSION TAG SEQRES 1 A 539 GLY THR THR GLY MET PRO GLN TYR SER THR PHE HIS SER SEQRES 2 A 539 GLU ASN ARG ASP TRP THR PHE ASN HIS LEU THR VAL HIS SEQRES 3 A 539 ARG ARG THR GLY ALA VAL TYR VAL GLY ALA ILE ASN ARG SEQRES 4 A 539 VAL TYR LYS LEU THR GLY ASN LEU THR ILE GLN VAL ALA SEQRES 5 A 539 HIS LYS THR GLY PRO GLU GLU ASP ASN LYS ALA CYS TYR SEQRES 6 A 539 PRO PRO LEU ILE VAL GLN PRO CYS SER GLU VAL LEU THR SEQRES 7 A 539 LEU THR ASN ASN VAL ASN LYS LEU LEU ILE ILE ASP TYR SEQRES 8 A 539 SER GLU ASN ARG LEU LEU ALA CYS GLY SER LEU TYR GLN SEQRES 9 A 539 GLY VAL CYS LYS LEU LEU ARG LEU ASP ASP LEU PHE ILE SEQRES 10 A 539 LEU VAL GLU PRO SER HIS LYS LYS GLU HIS TYR LEU SER SEQRES 11 A 539 SER VAL ASN LYS THR GLY THR MET TYR GLY VAL ILE VAL SEQRES 12 A 539 ARG SER GLU GLY GLU ASP GLY LYS LEU PHE ILE GLY THR SEQRES 13 A 539 ALA VAL ASP GLY LYS GLN ASP TYR PHE PRO THR LEU SER SEQRES 14 A 539 SER ARG LYS LEU PRO ARG ASP PRO GLU SER SER ALA MET SEQRES 15 A 539 LEU ASP TYR GLU LEU HIS SER ASP PHE VAL SER SER LEU SEQRES 16 A 539 ILE LYS ILE PRO SER ASP THR LEU ALA LEU VAL SER HIS SEQRES 17 A 539 PHE ASP ILE PHE TYR ILE TYR GLY PHE ALA SER GLY GLY SEQRES 18 A 539 PHE VAL TYR PHE LEU THR VAL GLN PRO GLU THR PRO ASP SEQRES 19 A 539 GLY MET ALA ILE ASN SER ALA GLY ASP LEU PHE TYR THR SEQRES 20 A 539 SER ARG ILE VAL ARG LEU CYS LYS ASP ASP PRO LYS PHE SEQRES 21 A 539 HIS SER TYR VAL SER LEU PRO PHE GLY CYS THR ARG ALA SEQRES 22 A 539 GLY VAL GLU TYR ARG LEU LEU GLN ALA ALA TYR LEU ALA SEQRES 23 A 539 LYS PRO GLY GLU ALA LEU ALA GLN ALA PHE ASN ILE SER SEQRES 24 A 539 SER ASP GLU ASP VAL LEU PHE ALA ILE PHE SER LYS GLY SEQRES 25 A 539 GLN LYS GLN TYR HIS HIS PRO PRO ASP ASP SER ALA LEU SEQRES 26 A 539 CYS ALA PHE PRO ILE ARG ALA ILE ASN LEU GLN ILE LYS SEQRES 27 A 539 GLU ARG LEU GLN SER CYS TYR HIS GLY GLU GLY ASN LEU SEQRES 28 A 539 GLU LEU ASN TRP LEU LEU GLY LYS ASP VAL GLN CYS THR SEQRES 29 A 539 LYS ALA PRO VAL PRO ILE ASP ASP ASN PHE CYS GLY LEU SEQRES 30 A 539 ASP ILE ASN GLN PRO LEU GLY GLY SER THR PRO VAL GLU SEQRES 31 A 539 GLY LEU THR LEU TYR THR THR SER ARG ASP ARG LEU THR SEQRES 32 A 539 SER VAL ALA SER TYR VAL TYR ASN GLY TYR SER VAL VAL SEQRES 33 A 539 PHE VAL GLY THR LYS SER GLY LYS LEU LYS LYS ILE ARG SEQRES 34 A 539 ALA ASP GLY PRO PRO HIS GLY GLY VAL GLN TYR GLU MET SEQRES 35 A 539 VAL SER VAL PHE LYS ASP GLY SER PRO ILE LEU ARG ASP SEQRES 36 A 539 MET ALA PHE SER ILE ASN GLN LEU TYR LEU TYR VAL MET SEQRES 37 A 539 SER GLU ARG GLN VAL THR ARG VAL PRO VAL GLU SER CYS SEQRES 38 A 539 GLU GLN TYR THR THR CYS GLY GLU CYS LEU SER SER GLY SEQRES 39 A 539 ASP PRO HIS CYS GLY TRP CYS ALA LEU HIS ASN MET CYS SEQRES 40 A 539 SER ARG ARG ASP LYS CYS GLN ARG ALA TRP GLU ALA ASN SEQRES 41 A 539 ARG PHE ALA ALA SER ILE SER GLN CYS MET SER SER ARG SEQRES 42 A 539 GLU ASN LEU TYR PHE GLN SEQRES 1 B 539 GLY THR THR GLY MET PRO GLN TYR SER THR PHE HIS SER SEQRES 2 B 539 GLU ASN ARG ASP TRP THR PHE ASN HIS LEU THR VAL HIS SEQRES 3 B 539 ARG ARG THR GLY ALA VAL TYR VAL GLY ALA ILE ASN ARG SEQRES 4 B 539 VAL TYR LYS LEU THR GLY ASN LEU THR ILE GLN VAL ALA SEQRES 5 B 539 HIS LYS THR GLY PRO GLU GLU ASP ASN LYS ALA CYS TYR SEQRES 6 B 539 PRO PRO LEU ILE VAL GLN PRO CYS SER GLU VAL LEU THR SEQRES 7 B 539 LEU THR ASN ASN VAL ASN LYS LEU LEU ILE ILE ASP TYR SEQRES 8 B 539 SER GLU ASN ARG LEU LEU ALA CYS GLY SER LEU TYR GLN SEQRES 9 B 539 GLY VAL CYS LYS LEU LEU ARG LEU ASP ASP LEU PHE ILE SEQRES 10 B 539 LEU VAL GLU PRO SER HIS LYS LYS GLU HIS TYR LEU SER SEQRES 11 B 539 SER VAL ASN LYS THR GLY THR MET TYR GLY VAL ILE VAL SEQRES 12 B 539 ARG SER GLU GLY GLU ASP GLY LYS LEU PHE ILE GLY THR SEQRES 13 B 539 ALA VAL ASP GLY LYS GLN ASP TYR PHE PRO THR LEU SER SEQRES 14 B 539 SER ARG LYS LEU PRO ARG ASP PRO GLU SER SER ALA MET SEQRES 15 B 539 LEU ASP TYR GLU LEU HIS SER ASP PHE VAL SER SER LEU SEQRES 16 B 539 ILE LYS ILE PRO SER ASP THR LEU ALA LEU VAL SER HIS SEQRES 17 B 539 PHE ASP ILE PHE TYR ILE TYR GLY PHE ALA SER GLY GLY SEQRES 18 B 539 PHE VAL TYR PHE LEU THR VAL GLN PRO GLU THR PRO ASP SEQRES 19 B 539 GLY MET ALA ILE ASN SER ALA GLY ASP LEU PHE TYR THR SEQRES 20 B 539 SER ARG ILE VAL ARG LEU CYS LYS ASP ASP PRO LYS PHE SEQRES 21 B 539 HIS SER TYR VAL SER LEU PRO PHE GLY CYS THR ARG ALA SEQRES 22 B 539 GLY VAL GLU TYR ARG LEU LEU GLN ALA ALA TYR LEU ALA SEQRES 23 B 539 LYS PRO GLY GLU ALA LEU ALA GLN ALA PHE ASN ILE SER SEQRES 24 B 539 SER ASP GLU ASP VAL LEU PHE ALA ILE PHE SER LYS GLY SEQRES 25 B 539 GLN LYS GLN TYR HIS HIS PRO PRO ASP ASP SER ALA LEU SEQRES 26 B 539 CYS ALA PHE PRO ILE ARG ALA ILE ASN LEU GLN ILE LYS SEQRES 27 B 539 GLU ARG LEU GLN SER CYS TYR HIS GLY GLU GLY ASN LEU SEQRES 28 B 539 GLU LEU ASN TRP LEU LEU GLY LYS ASP VAL GLN CYS THR SEQRES 29 B 539 LYS ALA PRO VAL PRO ILE ASP ASP ASN PHE CYS GLY LEU SEQRES 30 B 539 ASP ILE ASN GLN PRO LEU GLY GLY SER THR PRO VAL GLU SEQRES 31 B 539 GLY LEU THR LEU TYR THR THR SER ARG ASP ARG LEU THR SEQRES 32 B 539 SER VAL ALA SER TYR VAL TYR ASN GLY TYR SER VAL VAL SEQRES 33 B 539 PHE VAL GLY THR LYS SER GLY LYS LEU LYS LYS ILE ARG SEQRES 34 B 539 ALA ASP GLY PRO PRO HIS GLY GLY VAL GLN TYR GLU MET SEQRES 35 B 539 VAL SER VAL PHE LYS ASP GLY SER PRO ILE LEU ARG ASP SEQRES 36 B 539 MET ALA PHE SER ILE ASN GLN LEU TYR LEU TYR VAL MET SEQRES 37 B 539 SER GLU ARG GLN VAL THR ARG VAL PRO VAL GLU SER CYS SEQRES 38 B 539 GLU GLN TYR THR THR CYS GLY GLU CYS LEU SER SER GLY SEQRES 39 B 539 ASP PRO HIS CYS GLY TRP CYS ALA LEU HIS ASN MET CYS SEQRES 40 B 539 SER ARG ARG ASP LYS CYS GLN ARG ALA TRP GLU ALA ASN SEQRES 41 B 539 ARG PHE ALA ALA SER ILE SER GLN CYS MET SER SER ARG SEQRES 42 B 539 GLU ASN LEU TYR PHE GLN MODRES 3AL9 ASN B 76 ASN GLYCOSYLATION SITE HET EDO A8301 4 HET EDO A8302 4 HET NAG B9101 14 HET EDO B8301 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN EDO ETHYLENE GLYCOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 EDO 3(C2 H6 O2) FORMUL 5 NAG C8 H15 N O6 FORMUL 7 HOH *460(H2 O) HELIX 1 1 TYR A 121 GLU A 123 5 3 HELIX 2 2 LYS A 154 TYR A 158 5 5 HELIX 3 3 PRO A 229 VAL A 236 1 8 HELIX 4 4 GLY A 319 ASN A 327 1 9 HELIX 5 5 ILE A 360 HIS A 376 1 17 HELIX 6 6 LEU A 383 GLY A 388 1 6 HELIX 7 7 SER A 510 TYR A 514 5 5 HELIX 8 8 THR A 516 LEU A 521 1 6 HELIX 9 9 ARG A 539 CYS A 543 5 5 HELIX 10 10 ILE A 556 ARG A 563 1 8 HELIX 11 11 TYR B 121 GLU B 123 5 3 HELIX 12 12 SER B 131 VAL B 136 1 6 HELIX 13 13 LYS B 154 TYR B 158 5 5 HELIX 14 14 PRO B 229 VAL B 236 1 8 HELIX 15 15 GLY B 319 ASN B 327 1 9 HELIX 16 16 ILE B 360 HIS B 376 1 17 HELIX 17 17 LEU B 383 GLY B 388 1 6 HELIX 18 18 SER B 510 TYR B 514 5 5 HELIX 19 19 THR B 516 SER B 522 1 7 HELIX 20 20 LEU B 533 ASN B 535 5 3 HELIX 21 21 ARG B 539 CYS B 543 5 5 HELIX 22 22 SER B 555 ARG B 563 1 9 SHEET 1 A 4 THR A 40 HIS A 42 0 SHEET 2 A 4 GLN A 502 PRO A 507 -1 O VAL A 503 N PHE A 41 SHEET 3 A 4 TYR A 494 MET A 498 -1 N VAL A 497 O THR A 504 SHEET 4 A 4 ALA A 487 PHE A 488 -1 N ALA A 487 O TYR A 496 SHEET 1 B 4 PHE A 50 VAL A 55 0 SHEET 2 B 4 VAL A 62 ALA A 66 -1 O GLY A 65 N ASN A 51 SHEET 3 B 4 ARG A 69 LEU A 73 -1 O LEU A 73 N VAL A 62 SHEET 4 B 4 ILE A 79 LYS A 84 -1 O HIS A 83 N VAL A 70 SHEET 1 C 2 GLU A 88 ASP A 90 0 SHEET 2 C 2 THR A 108 THR A 110 -1 O THR A 110 N GLU A 88 SHEET 1 D 4 ASN A 114 ASP A 120 0 SHEET 2 D 4 ARG A 125 GLY A 130 -1 O ARG A 125 N ASP A 120 SHEET 3 D 4 CYS A 137 ARG A 141 -1 O LEU A 140 N LEU A 126 SHEET 4 D 4 ILE A 147 VAL A 149 -1 O LEU A 148 N LEU A 139 SHEET 1 E 4 MET A 168 VAL A 173 0 SHEET 2 E 4 GLY A 180 THR A 186 -1 O LYS A 181 N VAL A 173 SHEET 3 E 4 LEU A 198 LEU A 203 -1 O SER A 199 N ILE A 184 SHEET 4 E 4 LEU A 225 ILE A 226 -1 O ILE A 226 N LEU A 198 SHEET 1 F 5 PHE A 242 SER A 249 0 SHEET 2 F 5 PHE A 252 PRO A 260 -1 O VAL A 258 N PHE A 242 SHEET 3 F 5 TYR A 276 CYS A 284 -1 O VAL A 281 N PHE A 255 SHEET 4 F 5 VAL A 294 ARG A 302 -1 O LEU A 296 N ILE A 280 SHEET 5 F 5 VAL A 419 GLU A 420 1 O VAL A 419 N PRO A 297 SHEET 1 G 8 PHE A 242 SER A 249 0 SHEET 2 G 8 PHE A 252 PRO A 260 -1 O VAL A 258 N PHE A 242 SHEET 3 G 8 TYR A 276 CYS A 284 -1 O VAL A 281 N PHE A 255 SHEET 4 G 8 VAL A 294 ARG A 302 -1 O LEU A 296 N ILE A 280 SHEET 5 G 8 VAL A 305 ALA A 316 -1 O TYR A 307 N CYS A 300 SHEET 6 G 8 VAL A 334 LYS A 341 -1 O ILE A 338 N GLN A 311 SHEET 7 G 8 SER A 353 PRO A 359 -1 O PHE A 358 N LEU A 335 SHEET 8 G 8 LEU A 422 THR A 427 -1 O LEU A 424 N LEU A 355 SHEET 1 H 4 LEU A 432 TYR A 440 0 SHEET 2 H 4 TYR A 443 THR A 450 -1 O PHE A 447 N ALA A 436 SHEET 3 H 4 LYS A 454 GLY A 462 -1 O ILE A 458 N VAL A 446 SHEET 4 H 4 GLY A 466 SER A 474 -1 O GLU A 471 N LYS A 457 SHEET 1 I 3 MET A 536 SER A 538 0 SHEET 2 I 3 GLY A 529 CYS A 531 -1 N CYS A 531 O MET A 536 SHEET 3 I 3 PHE A 552 ALA A 553 -1 O ALA A 553 N TRP A 530 SHEET 1 J 4 THR B 40 HIS B 42 0 SHEET 2 J 4 GLN B 502 PRO B 507 -1 O VAL B 503 N PHE B 41 SHEET 3 J 4 TYR B 494 MET B 498 -1 N VAL B 497 O THR B 504 SHEET 4 J 4 ALA B 487 PHE B 488 -1 N ALA B 487 O TYR B 496 SHEET 1 K 4 PHE B 50 VAL B 55 0 SHEET 2 K 4 VAL B 62 ALA B 66 -1 O TYR B 63 N THR B 54 SHEET 3 K 4 ARG B 69 LEU B 73 -1 O LEU B 73 N VAL B 62 SHEET 4 K 4 ILE B 79 LYS B 84 -1 O HIS B 83 N VAL B 70 SHEET 1 L 2 GLU B 88 ASP B 90 0 SHEET 2 L 2 THR B 108 THR B 110 -1 O THR B 110 N GLU B 88 SHEET 1 M 4 LEU B 116 ASP B 120 0 SHEET 2 M 4 ARG B 125 CYS B 129 -1 O LEU B 127 N ILE B 118 SHEET 3 M 4 CYS B 137 ARG B 141 -1 O LEU B 140 N LEU B 126 SHEET 4 M 4 ILE B 147 VAL B 149 -1 O LEU B 148 N LEU B 139 SHEET 1 N 4 MET B 168 VAL B 173 0 SHEET 2 N 4 GLY B 180 THR B 186 -1 O LYS B 181 N VAL B 173 SHEET 3 N 4 LEU B 198 LEU B 203 -1 O SER B 199 N ILE B 184 SHEET 4 N 4 LEU B 225 ILE B 226 -1 O ILE B 226 N LEU B 198 SHEET 1 O 9 PHE B 242 SER B 249 0 SHEET 2 O 9 PHE B 252 PRO B 260 -1 O VAL B 258 N PHE B 242 SHEET 3 O 9 TYR B 276 CYS B 284 -1 O VAL B 281 N PHE B 255 SHEET 4 O 9 VAL B 294 ARG B 302 -1 O LEU B 296 N ILE B 280 SHEET 5 O 9 VAL B 419 THR B 427 1 O VAL B 419 N PRO B 297 SHEET 6 O 9 SER B 353 PRO B 359 -1 N LEU B 355 O LEU B 424 SHEET 7 O 9 VAL B 334 LYS B 341 -1 N LEU B 335 O PHE B 358 SHEET 8 O 9 VAL B 305 ALA B 316 -1 N GLN B 311 O ILE B 338 SHEET 9 O 9 VAL B 294 ARG B 302 -1 N CYS B 300 O TYR B 307 SHEET 1 P 4 LEU B 432 TYR B 440 0 SHEET 2 P 4 TYR B 443 THR B 450 -1 O PHE B 447 N ALA B 436 SHEET 3 P 4 LYS B 454 GLY B 462 -1 O LYS B 456 N VAL B 448 SHEET 4 P 4 GLY B 466 SER B 474 -1 O GLU B 471 N LYS B 457 SHEET 1 Q 3 MET B 536 SER B 538 0 SHEET 2 Q 3 GLY B 529 CYS B 531 -1 N CYS B 531 O MET B 536 SHEET 3 Q 3 PHE B 552 ALA B 553 -1 O ALA B 553 N TRP B 530 SSBOND 1 CYS A 94 CYS A 103 1555 1555 2.04 SSBOND 2 CYS A 129 CYS A 137 1555 1555 2.07 SSBOND 3 CYS A 284 CYS A 405 1555 1555 2.04 SSBOND 4 CYS A 300 CYS A 356 1555 1555 2.07 SSBOND 5 CYS A 374 CYS A 393 1555 1555 2.08 SSBOND 6 CYS A 511 CYS A 528 1555 1555 2.05 SSBOND 7 CYS A 517 CYS A 559 1555 1555 2.04 SSBOND 8 CYS A 520 CYS A 537 1555 1555 2.04 SSBOND 9 CYS A 531 CYS A 543 1555 1555 2.10 SSBOND 10 CYS B 94 CYS B 103 1555 1555 2.04 SSBOND 11 CYS B 129 CYS B 137 1555 1555 2.06 SSBOND 12 CYS B 284 CYS B 405 1555 1555 2.02 SSBOND 13 CYS B 300 CYS B 356 1555 1555 2.08 SSBOND 14 CYS B 374 CYS B 393 1555 1555 2.07 SSBOND 15 CYS B 511 CYS B 528 1555 1555 2.03 SSBOND 16 CYS B 517 CYS B 559 1555 1555 2.01 SSBOND 17 CYS B 520 CYS B 537 1555 1555 2.04 SSBOND 18 CYS B 531 CYS B 543 1555 1555 2.08 LINK ND2 ASN B 76 C1 NAG B9101 1555 1555 1.44 CISPEP 1 GLY A 86 PRO A 87 0 0.14 CISPEP 2 TYR A 95 PRO A 96 0 0.56 CISPEP 3 GLN A 411 PRO A 412 0 -5.79 CISPEP 4 PRO A 463 PRO A 464 0 1.21 CISPEP 5 GLY B 86 PRO B 87 0 1.39 CISPEP 6 TYR B 95 PRO B 96 0 3.70 CISPEP 7 GLN B 411 PRO B 412 0 -6.24 CISPEP 8 PRO B 463 PRO B 464 0 5.29 CRYST1 55.702 60.677 95.385 109.80 92.47 112.53 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017953 0.007448 0.003946 0.00000 SCALE2 0.000000 0.017843 0.007441 0.00000 SCALE3 0.000000 0.000000 0.011370 0.00000