PDB Short entry for 3APO HEADER OXIDOREDUCTASE 20-OCT-10 3APO TITLE CRYSTAL STRUCTURE OF FULL-LENGTH ERDJ5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNAJ HOMOLOG SUBFAMILY C MEMBER 10; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ER-RESIDENT PROTEIN ERDJ5, ENDOPLASMIC RETICULUM DNAJ-PDI COMPND 5 FUSION PROTEIN 1, J DOMAIN-CONTAINING PROTEIN DISULFIDE ISOMERASE- COMPND 6 LIKE PROTEIN, J DOMAIN-CONTAINING PDI-LIKE PROTEIN, JPDI; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: DNAJC10, ERDJ5, JPDI; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ORIGAMI; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS PDI FAMILY, THIOREDOXIN, ENDOPLASMIC RETICULUM, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR K.INABA,M.SUZUKI,K.NAGATA REVDAT 1 20-APR-11 3APO 0 JRNL AUTH M.HAGIWARA,K.MAEGAWA,M.SUZUKI,R.USHIODA,K.ARAKI,Y.MATSUMOTO, JRNL AUTH 2 J.HOSEKI,K.NAGATA,K.INABA JRNL TITL STRUCTURAL BASIS OF AN ERAD PATHWAY MEDIATED BY THE JRNL TITL 2 ER-RESIDENT PROTEIN DISULFIDE REDUCTASE ERDJ5. JRNL REF MOL.CELL V. 41 432 2011 JRNL REFN ISSN 1097-2765 JRNL PMID 21329881 JRNL DOI 10.1016/J.MOLCEL.2011.01.021 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0085 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 30477 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1627 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2186 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.2350 REMARK 3 BIN FREE R VALUE SET COUNT : 119 REMARK 3 BIN FREE R VALUE : 0.2930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5547 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 221 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.21000 REMARK 3 B22 (A**2) : -1.55000 REMARK 3 B33 (A**2) : 2.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.61000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.261 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.191 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.031 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5699 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7723 ; 1.323 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 682 ; 6.122 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 276 ;34.416 ;23.804 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 953 ;17.096 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;17.681 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 820 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4362 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3427 ; 0.512 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5522 ; 0.979 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2272 ; 1.524 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2201 ; 2.438 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 36 A 99 REMARK 3 ORIGIN FOR THE GROUP (A): -10.1441 -34.6563 58.1804 REMARK 3 T TENSOR REMARK 3 T11: 0.3310 T22: 0.3200 REMARK 3 T33: 0.3371 T12: -0.0228 REMARK 3 T13: -0.0889 T23: -0.1052 REMARK 3 L TENSOR REMARK 3 L11: 3.9142 L22: 3.4859 REMARK 3 L33: 11.5237 L12: 1.1922 REMARK 3 L13: -0.5857 L23: -0.9570 REMARK 3 S TENSOR REMARK 3 S11: 0.0568 S12: 0.3995 S13: -0.2264 REMARK 3 S21: -0.3951 S22: 0.1964 S23: 0.8190 REMARK 3 S31: 0.7108 S32: -0.6371 S33: -0.2531 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 117 A 233 REMARK 3 ORIGIN FOR THE GROUP (A): -1.7218 -13.2177 48.3578 REMARK 3 T TENSOR REMARK 3 T11: 0.3013 T22: 0.5496 REMARK 3 T33: 0.1509 T12: -0.2435 REMARK 3 T13: -0.1510 T23: 0.2108 REMARK 3 L TENSOR REMARK 3 L11: 4.9705 L22: 6.0419 REMARK 3 L33: 3.8116 L12: 3.0149 REMARK 3 L13: 1.2897 L23: 0.9878 REMARK 3 S TENSOR REMARK 3 S11: -0.6961 S12: 1.1715 S13: 0.2999 REMARK 3 S21: -0.9968 S22: 0.8273 S23: 0.4557 REMARK 3 S31: -0.0136 S32: -0.4695 S33: -0.1312 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 234 A 347 REMARK 3 ORIGIN FOR THE GROUP (A): 28.4705 -3.6900 56.6066 REMARK 3 T TENSOR REMARK 3 T11: 0.1294 T22: 0.0797 REMARK 3 T33: 0.0635 T12: -0.0181 REMARK 3 T13: 0.0677 T23: -0.0157 REMARK 3 L TENSOR REMARK 3 L11: 1.8938 L22: 4.1508 REMARK 3 L33: 1.8014 L12: 0.6011 REMARK 3 L13: 0.2280 L23: -0.1811 REMARK 3 S TENSOR REMARK 3 S11: -0.1407 S12: 0.0948 S13: -0.0311 REMARK 3 S21: -0.2107 S22: 0.0697 S23: -0.3722 REMARK 3 S31: -0.1192 S32: 0.0529 S33: 0.0709 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 348 A 453 REMARK 3 ORIGIN FOR THE GROUP (A): 7.8910 -14.7423 77.0941 REMARK 3 T TENSOR REMARK 3 T11: 0.0280 T22: 0.0455 REMARK 3 T33: 0.0390 T12: 0.0001 REMARK 3 T13: 0.0289 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 2.7118 L22: 2.3913 REMARK 3 L33: 1.9028 L12: 0.9216 REMARK 3 L13: 0.0931 L23: -0.6429 REMARK 3 S TENSOR REMARK 3 S11: 0.0889 S12: 0.1483 S13: 0.1023 REMARK 3 S21: -0.1212 S22: -0.0485 S23: -0.0939 REMARK 3 S31: 0.0052 S32: 0.0796 S33: -0.0404 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 454 A 555 REMARK 3 ORIGIN FOR THE GROUP (A): -13.9742 -22.1290 79.2160 REMARK 3 T TENSOR REMARK 3 T11: 0.0189 T22: 0.1330 REMARK 3 T33: 0.1092 T12: -0.0259 REMARK 3 T13: 0.0158 T23: 0.0346 REMARK 3 L TENSOR REMARK 3 L11: 3.7723 L22: 6.4795 REMARK 3 L33: 0.5799 L12: -2.8705 REMARK 3 L13: 0.4575 L23: 0.1130 REMARK 3 S TENSOR REMARK 3 S11: -0.1097 S12: -0.1237 S13: -0.2076 REMARK 3 S21: 0.1017 S22: 0.1968 S23: 0.5775 REMARK 3 S31: 0.0363 S32: -0.1936 S33: -0.0871 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 556 A 668 REMARK 3 ORIGIN FOR THE GROUP (A): -45.6418 -21.3752 85.8183 REMARK 3 T TENSOR REMARK 3 T11: 0.0787 T22: 0.0923 REMARK 3 T33: 0.1595 T12: -0.0186 REMARK 3 T13: -0.0621 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 2.6057 L22: 5.5654 REMARK 3 L33: 2.9899 L12: 0.1240 REMARK 3 L13: 0.7583 L23: 0.3845 REMARK 3 S TENSOR REMARK 3 S11: -0.0170 S12: -0.2250 S13: -0.0031 REMARK 3 S21: 0.6525 S22: -0.1136 S23: -0.5311 REMARK 3 S31: 0.0080 S32: -0.2184 S33: 0.1307 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 669 A 781 REMARK 3 ORIGIN FOR THE GROUP (A): -54.3601 -26.7957 55.3049 REMARK 3 T TENSOR REMARK 3 T11: 0.1534 T22: 0.0704 REMARK 3 T33: 0.0527 T12: -0.0029 REMARK 3 T13: 0.0667 T23: -0.0330 REMARK 3 L TENSOR REMARK 3 L11: 1.2806 L22: 3.8214 REMARK 3 L33: 2.8707 L12: -0.1416 REMARK 3 L13: 0.8156 L23: -0.2137 REMARK 3 S TENSOR REMARK 3 S11: 0.0691 S12: 0.0894 S13: -0.0306 REMARK 3 S21: -0.4888 S22: 0.0299 S23: -0.2271 REMARK 3 S31: 0.1110 S32: -0.0216 S33: -0.0990 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3APO COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-NOV-10. REMARK 100 THE RCSB ID CODE IS RCSB029541. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : DIP6040 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32121 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 45.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.53600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SHELX C/D/E REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 8000, 100MM HEPES PH7.5, 8MM REMARK 280 CYSTINE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.70000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 14 REMARK 465 GLY A 15 REMARK 465 SER A 16 REMARK 465 SER A 17 REMARK 465 HIS A 18 REMARK 465 HIS A 19 REMARK 465 HIS A 20 REMARK 465 HIS A 21 REMARK 465 HIS A 22 REMARK 465 HIS A 23 REMARK 465 SER A 24 REMARK 465 SER A 25 REMARK 465 GLY A 26 REMARK 465 HIS A 27 REMARK 465 ILE A 28 REMARK 465 GLU A 29 REMARK 465 GLY A 30 REMARK 465 ARG A 31 REMARK 465 HIS A 32 REMARK 465 ASP A 33 REMARK 465 GLN A 34 REMARK 465 ASN A 35 REMARK 465 LEU A 58 REMARK 465 ALA A 59 REMARK 465 LEU A 60 REMARK 465 LYS A 61 REMARK 465 LEU A 62 REMARK 465 HIS A 63 REMARK 465 PRO A 64 REMARK 465 ASP A 65 REMARK 465 LYS A 66 REMARK 465 ASN A 67 REMARK 465 PRO A 68 REMARK 465 ASN A 69 REMARK 465 ASN A 70 REMARK 465 PRO A 71 REMARK 465 ASN A 72 REMARK 465 ALA A 73 REMARK 465 HIS A 74 REMARK 465 GLY A 75 REMARK 465 ASP A 76 REMARK 465 PHE A 77 REMARK 465 LEU A 78 REMARK 465 LYS A 79 REMARK 465 ILE A 80 REMARK 465 GLY A 100 REMARK 465 GLU A 101 REMARK 465 LYS A 102 REMARK 465 GLY A 103 REMARK 465 LEU A 104 REMARK 465 GLU A 105 REMARK 465 ASP A 106 REMARK 465 ASN A 107 REMARK 465 GLN A 108 REMARK 465 GLY A 109 REMARK 465 GLY A 110 REMARK 465 GLN A 111 REMARK 465 TYR A 112 REMARK 465 GLU A 113 REMARK 465 SER A 114 REMARK 465 TRP A 115 REMARK 465 SER A 116 REMARK 465 ARG A 194 REMARK 465 MET A 195 REMARK 465 LYS A 196 REMARK 465 GLY A 197 REMARK 465 VAL A 198 REMARK 465 ASN A 199 REMARK 465 SER A 200 REMARK 465 TYR A 201 REMARK 465 ASP A 305 REMARK 465 THR A 306 REMARK 465 THR A 307 REMARK 465 ALA A 308 REMARK 465 SER A 309 REMARK 465 LYS A 375 REMARK 465 ASN A 376 REMARK 465 GLU A 377 REMARK 465 ASN A 378 REMARK 465 ALA A 379 REMARK 465 LEU A 782 REMARK 465 GLN A 783 REMARK 465 SER A 784 REMARK 465 GLN A 785 REMARK 465 VAL A 786 REMARK 465 LYS A 787 REMARK 465 ARG A 788 REMARK 465 ASN A 789 REMARK 465 LYS A 790 REMARK 465 ASP A 791 REMARK 465 GLU A 792 REMARK 465 LEU A 793 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TYR A 537 O HOH A 865 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 44 1.73 -67.26 REMARK 500 LYS A 56 65.09 -65.64 REMARK 500 ARG A 82 -60.28 3.56 REMARK 500 ASP A 121 -8.29 -179.74 REMARK 500 SER A 158 104.07 -51.51 REMARK 500 GLN A 297 64.30 -102.30 REMARK 500 SER A 303 26.70 -79.78 REMARK 500 ALA A 406 72.59 -176.26 REMARK 500 PRO A 464 61.78 -59.81 REMARK 500 HIS A 511 62.66 -106.78 REMARK 500 GLN A 531 71.45 40.01 REMARK 500 HIS A 541 83.45 -62.99 REMARK 500 VAL A 570 -61.68 -94.41 REMARK 500 THR A 606 130.51 -38.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3APQ RELATED DB: PDB REMARK 900 RELATED ID: 3APS RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE DEPOSITORS STATES THAT THIS PROTEIN ACTUALLY CONTAINS GLY617 REMARK 999 AND THAT UNIPROT IS INCORRECT AT THIS POSITION. DBREF 3APO A 33 793 UNP Q9DC23 DJC10_MOUSE 33 793 SEQADV 3APO MET A 14 UNP Q9DC23 EXPRESSION TAG SEQADV 3APO GLY A 15 UNP Q9DC23 EXPRESSION TAG SEQADV 3APO SER A 16 UNP Q9DC23 EXPRESSION TAG SEQADV 3APO SER A 17 UNP Q9DC23 EXPRESSION TAG SEQADV 3APO HIS A 18 UNP Q9DC23 EXPRESSION TAG SEQADV 3APO HIS A 19 UNP Q9DC23 EXPRESSION TAG SEQADV 3APO HIS A 20 UNP Q9DC23 EXPRESSION TAG SEQADV 3APO HIS A 21 UNP Q9DC23 EXPRESSION TAG SEQADV 3APO HIS A 22 UNP Q9DC23 EXPRESSION TAG SEQADV 3APO HIS A 23 UNP Q9DC23 EXPRESSION TAG SEQADV 3APO SER A 24 UNP Q9DC23 EXPRESSION TAG SEQADV 3APO SER A 25 UNP Q9DC23 EXPRESSION TAG SEQADV 3APO GLY A 26 UNP Q9DC23 EXPRESSION TAG SEQADV 3APO HIS A 27 UNP Q9DC23 EXPRESSION TAG SEQADV 3APO ILE A 28 UNP Q9DC23 EXPRESSION TAG SEQADV 3APO GLU A 29 UNP Q9DC23 EXPRESSION TAG SEQADV 3APO GLY A 30 UNP Q9DC23 EXPRESSION TAG SEQADV 3APO ARG A 31 UNP Q9DC23 EXPRESSION TAG SEQADV 3APO HIS A 32 UNP Q9DC23 EXPRESSION TAG SEQADV 3APO ASP A 91 UNP Q9DC23 HIS 91 ENGINEERED MUTATION SEQADV 3APO SER A 158 UNP Q9DC23 CYS 158 ENGINEERED MUTATION SEQADV 3APO SER A 161 UNP Q9DC23 CYS 161 ENGINEERED MUTATION SEQADV 3APO VAL A 399 UNP Q9DC23 GLY 399 ENGINEERED MUTATION SEQADV 3APO SER A 419 UNP Q9DC23 CYS 419 ENGINEERED MUTATION SEQADV 3APO SER A 480 UNP Q9DC23 CYS 480 ENGINEERED MUTATION SEQADV 3APO SER A 483 UNP Q9DC23 CYS 483 ENGINEERED MUTATION SEQADV 3APO SER A 588 UNP Q9DC23 CYS 588 ENGINEERED MUTATION SEQADV 3APO SER A 591 UNP Q9DC23 CYS 591 ENGINEERED MUTATION SEQADV 3APO GLY A 617 UNP Q9DC23 GLN 617 SEE REMARK 999 SEQADV 3APO SER A 700 UNP Q9DC23 CYS 700 ENGINEERED MUTATION SEQADV 3APO SER A 703 UNP Q9DC23 CYS 703 ENGINEERED MUTATION SEQRES 1 A 780 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 780 HIS ILE GLU GLY ARG HIS ASP GLN ASN PHE TYR SER LEU SEQRES 3 A 780 LEU GLY VAL SER LYS THR ALA SER SER ARG GLU ILE ARG SEQRES 4 A 780 GLN ALA PHE LYS LYS LEU ALA LEU LYS LEU HIS PRO ASP SEQRES 5 A 780 LYS ASN PRO ASN ASN PRO ASN ALA HIS GLY ASP PHE LEU SEQRES 6 A 780 LYS ILE ASN ARG ALA TYR GLU VAL LEU LYS ASP GLU ASP SEQRES 7 A 780 LEU ARG LYS LYS TYR ASP LYS TYR GLY GLU LYS GLY LEU SEQRES 8 A 780 GLU ASP ASN GLN GLY GLY GLN TYR GLU SER TRP SER TYR SEQRES 9 A 780 TYR ARG TYR ASP PHE GLY ILE TYR ASP ASP ASP PRO GLU SEQRES 10 A 780 ILE ILE THR LEU GLU ARG ARG GLU PHE ASP ALA ALA VAL SEQRES 11 A 780 ASN SER GLY GLU LEU TRP PHE VAL ASN PHE TYR SER PRO SEQRES 12 A 780 GLY SER SER HIS SER HIS ASP LEU ALA PRO THR TRP ARG SEQRES 13 A 780 GLU PHE ALA LYS GLU VAL ASP GLY LEU LEU ARG ILE GLY SEQRES 14 A 780 ALA VAL ASN CYS GLY ASP ASP ARG MET LEU CYS ARG MET SEQRES 15 A 780 LYS GLY VAL ASN SER TYR PRO SER LEU PHE ILE PHE ARG SEQRES 16 A 780 SER GLY MET ALA ALA VAL LYS TYR ASN GLY ASP ARG SER SEQRES 17 A 780 LYS GLU SER LEU VAL ALA PHE ALA MET GLN HIS VAL ARG SEQRES 18 A 780 SER THR VAL THR GLU LEU SER THR GLY ASN PHE VAL ASN SEQRES 19 A 780 ALA ILE GLU THR ALA PHE ALA ALA GLY VAL GLY TRP LEU SEQRES 20 A 780 ILE THR PHE CYS SER LYS GLY GLU ASP CYS LEU THR SER SEQRES 21 A 780 GLN THR ARG LEU ARG LEU SER GLY MET LEU ASP GLY LEU SEQRES 22 A 780 VAL ASN VAL GLY TRP VAL ASP CYS ASP ALA GLN ASP SER SEQRES 23 A 780 LEU CYS LYS SER LEU ASP THR THR ALA SER THR THR ALA SEQRES 24 A 780 TYR PHE PRO PRO GLY ALA THR LEU ASN ASP ARG GLU LYS SEQRES 25 A 780 SER SER VAL LEU PHE LEU ASN SER LEU ASP ALA LYS GLU SEQRES 26 A 780 ILE TYR MET GLU ILE ILE HIS ASN LEU PRO ASP PHE GLU SEQRES 27 A 780 LEU LEU SER ALA ASN GLN LEU GLU ASP ARG LEU ALA HIS SEQRES 28 A 780 HIS ARG TRP LEU VAL PHE PHE HIS PHE GLY LYS ASN GLU SEQRES 29 A 780 ASN ALA ASN ASP PRO GLU LEU LYS LYS LEU LYS THR LEU SEQRES 30 A 780 LEU LYS ASN GLU HIS ILE GLN VAL VAL ARG PHE ASP CYS SEQRES 31 A 780 SER SER ALA PRO GLY ILE CYS SER ASP LEU TYR VAL PHE SEQRES 32 A 780 GLN PRO SER LEU ALA VAL PHE LYS GLY GLN GLY THR LYS SEQRES 33 A 780 GLU TYR GLU ILE HIS HIS GLY LYS LYS ILE LEU TYR ASP SEQRES 34 A 780 ILE LEU ALA PHE ALA LYS GLU SER VAL ASN SER HIS VAL SEQRES 35 A 780 THR THR LEU GLY PRO GLN ASN PHE PRO ALA SER ASP LYS SEQRES 36 A 780 GLU PRO TRP LEU VAL ASP PHE PHE ALA PRO TRP SER PRO SEQRES 37 A 780 PRO SER ARG ALA LEU LEU PRO GLU LEU ARG LYS ALA SER SEQRES 38 A 780 THR LEU LEU TYR GLY GLN LEU LYS VAL GLY THR LEU ASP SEQRES 39 A 780 CYS THR ILE HIS GLU GLY LEU CYS ASN MET TYR ASN ILE SEQRES 40 A 780 GLN ALA TYR PRO THR THR VAL VAL PHE ASN GLN SER SER SEQRES 41 A 780 ILE HIS GLU TYR GLU GLY HIS HIS SER ALA GLU GLN ILE SEQRES 42 A 780 LEU GLU PHE ILE GLU ASP LEU ARG ASN PRO SER VAL VAL SEQRES 43 A 780 SER LEU THR PRO SER THR PHE ASN GLU LEU VAL LYS GLN SEQRES 44 A 780 ARG LYS HIS ASP GLU VAL TRP MET VAL ASP PHE TYR SER SEQRES 45 A 780 PRO TRP SER HIS PRO SER GLN VAL LEU MET PRO GLU TRP SEQRES 46 A 780 LYS ARG MET ALA ARG THR LEU THR GLY LEU ILE ASN VAL SEQRES 47 A 780 GLY SER VAL ASP CYS GLY GLN TYR HIS SER PHE CYS THR SEQRES 48 A 780 GLN GLU ASN VAL GLN ARG TYR PRO GLU ILE ARG PHE TYR SEQRES 49 A 780 PRO GLN LYS SER SER LYS ALA TYR GLN TYR HIS SER TYR SEQRES 50 A 780 ASN GLY TRP ASN ARG ASP ALA TYR SER LEU ARG SER TRP SEQRES 51 A 780 GLY LEU GLY PHE LEU PRO GLN ALA SER ILE ASP LEU THR SEQRES 52 A 780 PRO GLN THR PHE ASN GLU LYS VAL LEU GLN GLY LYS THR SEQRES 53 A 780 HIS TRP VAL VAL ASP PHE TYR ALA PRO TRP SER GLY PRO SEQRES 54 A 780 SER GLN ASN PHE ALA PRO GLU PHE GLU LEU LEU ALA ARG SEQRES 55 A 780 MET ILE LYS GLY LYS VAL ARG ALA GLY LYS VAL ASP CYS SEQRES 56 A 780 GLN ALA TYR PRO GLN THR CYS GLN LYS ALA GLY ILE LYS SEQRES 57 A 780 ALA TYR PRO SER VAL LYS LEU TYR GLN TYR GLU ARG ALA SEQRES 58 A 780 LYS LYS SER ILE TRP GLU GLU GLN ILE ASN SER ARG ASP SEQRES 59 A 780 ALA LYS THR ILE ALA ALA LEU ILE TYR GLY LYS LEU GLU SEQRES 60 A 780 THR LEU GLN SER GLN VAL LYS ARG ASN LYS ASP GLU LEU FORMUL 2 HOH *221(H2 O) HELIX 1 1 PHE A 36 GLY A 41 1 6 HELIX 2 2 SER A 47 LYS A 56 1 10 HELIX 3 3 ARG A 82 ASP A 89 1 8 HELIX 4 4 ASP A 89 ASP A 97 1 9 HELIX 5 5 GLU A 135 ASN A 144 1 10 HELIX 6 6 SER A 158 VAL A 175 1 18 HELIX 7 7 SER A 221 GLN A 231 1 11 HELIX 8 8 SER A 241 GLY A 256 1 16 HELIX 9 9 THR A 272 LEU A 283 1 12 HELIX 10 10 GLN A 297 LYS A 302 1 6 HELIX 11 11 GLU A 324 VAL A 328 5 5 HELIX 12 12 ASP A 335 LEU A 347 1 13 HELIX 13 13 SER A 354 ALA A 363 1 10 HELIX 14 14 ASP A 381 LYS A 385 5 5 HELIX 15 15 LYS A 386 LYS A 392 1 7 HELIX 16 16 ALA A 406 LEU A 413 1 8 HELIX 17 17 ILE A 439 ASN A 452 1 14 HELIX 18 18 SER A 480 LEU A 497 1 18 HELIX 19 19 HIS A 511 TYR A 518 1 8 HELIX 20 20 SER A 542 ASN A 555 1 14 HELIX 21 21 THR A 562 VAL A 570 1 9 HELIX 22 22 SER A 588 THR A 606 1 19 HELIX 23 23 TYR A 619 GLU A 626 1 8 HELIX 24 24 ASP A 656 GLY A 666 1 11 HELIX 25 25 THR A 676 VAL A 684 1 9 HELIX 26 26 SER A 700 LYS A 718 1 19 HELIX 27 27 TYR A 731 ALA A 738 1 8 HELIX 28 28 ASP A 767 LEU A 779 1 13 SHEET 1 A 5 ILE A 131 THR A 133 0 SHEET 2 A 5 ARG A 180 ASN A 185 1 O ILE A 181 N ILE A 132 SHEET 3 A 5 TRP A 149 TYR A 154 1 N ASN A 152 O GLY A 182 SHEET 4 A 5 SER A 203 PHE A 207 -1 O SER A 203 N PHE A 153 SHEET 5 A 5 VAL A 214 LYS A 215 -1 O VAL A 214 N ILE A 206 SHEET 1 B 5 VAL A 237 GLU A 239 0 SHEET 2 B 5 VAL A 287 ASP A 293 1 O VAL A 289 N THR A 238 SHEET 3 B 5 GLY A 258 CYS A 264 1 N LEU A 260 O ASN A 288 SHEET 4 B 5 THR A 311 PHE A 314 -1 O PHE A 314 N TRP A 259 SHEET 5 B 5 LEU A 329 LEU A 331 -1 O LEU A 331 N THR A 311 SHEET 1 C 5 LEU A 352 LEU A 353 0 SHEET 2 C 5 ILE A 396 ASP A 402 1 O ARG A 400 N LEU A 353 SHEET 3 C 5 ARG A 366 HIS A 372 1 N PHE A 370 O PHE A 401 SHEET 4 C 5 SER A 419 LYS A 424 -1 O ALA A 421 N VAL A 369 SHEET 5 C 5 TYR A 431 ILE A 433 -1 O GLU A 432 N VAL A 422 SHEET 1 D 5 VAL A 455 THR A 457 0 SHEET 2 D 5 LYS A 502 ASP A 507 1 O THR A 505 N THR A 456 SHEET 3 D 5 TRP A 471 PHE A 476 1 N LEU A 472 O LYS A 502 SHEET 4 D 5 THR A 525 ASN A 530 -1 O THR A 525 N PHE A 475 SHEET 5 D 5 SER A 533 TYR A 537 -1 O HIS A 535 N VAL A 528 SHEET 1 E 5 VAL A 558 SER A 560 0 SHEET 2 E 5 ASN A 610 ASP A 615 1 O VAL A 611 N VAL A 559 SHEET 3 E 5 TRP A 579 TYR A 584 1 N ASP A 582 O VAL A 614 SHEET 4 E 5 GLU A 633 TYR A 637 -1 O TYR A 637 N TRP A 579 SHEET 5 E 5 HIS A 648 SER A 649 -1 O HIS A 648 N PHE A 636 SHEET 1 F 5 ILE A 673 LEU A 675 0 SHEET 2 F 5 ARG A 722 ASP A 727 1 O LYS A 725 N LEU A 675 SHEET 3 F 5 TRP A 691 TYR A 696 1 N VAL A 692 O GLY A 724 SHEET 4 F 5 SER A 745 GLU A 752 -1 O SER A 745 N PHE A 695 SHEET 5 F 5 SER A 757 ILE A 763 -1 O GLU A 761 N LEU A 748 SSBOND 1 CYS A 186 CYS A 193 1555 1555 2.04 SSBOND 2 CYS A 294 CYS A 301 1555 1555 2.03 SSBOND 3 CYS A 403 CYS A 410 1555 1555 2.03 SSBOND 4 CYS A 508 CYS A 515 1555 1555 2.04 SSBOND 5 CYS A 616 CYS A 623 1555 1555 2.02 SSBOND 6 CYS A 728 CYS A 735 1555 1555 2.02 CISPEP 1 TYR A 523 PRO A 524 0 -3.36 CISPEP 2 TYR A 631 PRO A 632 0 -4.43 CISPEP 3 TYR A 743 PRO A 744 0 -2.47 CRYST1 91.100 53.400 92.300 90.00 113.40 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010977 0.000000 0.004750 0.00000 SCALE2 0.000000 0.018727 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011805 0.00000