PDB Short entry for 3B7G HEADER HYDROLASE 30-OCT-07 3B7G TITLE HUMAN DEAD-BOX RNA HELICASE DDX20, CONSERVED DOMAIN I (DEAD) IN TITLE 2 COMPLEX WITH AMPPNP (ADENOSINE-(BETA,GAMMA)-IMIDOTRIPHOSPHATE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE ATP-DEPENDENT RNA HELICASE DDX20; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DEAD DOMAIN; COMPND 5 SYNONYM: DEAD BOX PROTEIN 20, DEAD BOX PROTEIN DP 103, COMPONENT OF COMPND 6 GEMS 3, GEMIN-3; COMPND 7 EC: 3.6.1.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DDX20, DP103, GEMIN3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)GOLD PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC-BSA4 KEYWDS RNA, HELICASE, DEAD, CONSERVED DOMAIN I, STRUCTURAL GENOMICS, KEYWDS 2 STRUCTURAL GENOMICS CONSORTIUM, SGC, ATP-BINDING, DNA-BINDING, KEYWDS 3 HYDROLASE, MRNA PROCESSING, MRNA SPLICING, NUCLEOTIDE-BINDING, KEYWDS 4 NUCLEUS, PHOSPHORYLATION, SPLICEOSOME EXPDTA X-RAY DIFFRACTION AUTHOR T.KARLBERG,L.TRESAUGUES,C.H.ARROWSMITH,H.BERGLUND,R.D.BUSAM, AUTHOR 2 R.COLLINS,L.G.DAHLGREN,A.M.EDWARDS,S.FLODIN,A.FLORES,S.GRASLUND, AUTHOR 3 M.HAMMARSTROM,I.JOHANSSON,A.KALLAS,T.KOTENYOVA,L.LEHTIO,M.MOCHE, AUTHOR 4 M.E.NILSSON,P.NORDLUND,T.NYMAN,C.PERSSON,J.SAGEMARK,L.SVENSSON, AUTHOR 5 A.G.THORSELL,S.VAN DEN BERG,J.WEIGELT,M.WELIN,L.HOLMBERG-SCHIAVONE, AUTHOR 6 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 5 30-AUG-23 3B7G 1 REMARK SEQADV REVDAT 4 13-JUL-11 3B7G 1 VERSN REVDAT 3 27-OCT-10 3B7G 1 JRNL REVDAT 2 24-FEB-09 3B7G 1 VERSN REVDAT 1 13-NOV-07 3B7G 0 JRNL AUTH P.SCHUTZ,T.KARLBERG,S.VAN DEN BERG,R.COLLINS,L.LEHTIO, JRNL AUTH 2 M.HOGBOM,L.HOLMBERG-SCHIAVONE,W.TEMPEL,H.W.PARK, JRNL AUTH 3 M.HAMMARSTROM,M.MOCHE,A.G.THORSELL,H.SCHULER JRNL TITL COMPARATIVE STRUCTURAL ANALYSIS OF HUMAN DEAD-BOX RNA JRNL TITL 2 HELICASES. JRNL REF PLOS ONE V. 5 12791 2010 JRNL REFN ESSN 1932-6203 JRNL PMID 20941364 JRNL DOI 10.1371/JOURNAL.PONE.0012791 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0040 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 38606 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2032 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2785 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1640 REMARK 3 BIN FREE R VALUE SET COUNT : 146 REMARK 3 BIN FREE R VALUE : 0.2430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3156 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 315 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.08000 REMARK 3 B22 (A**2) : -0.08000 REMARK 3 B33 (A**2) : 0.12000 REMARK 3 B12 (A**2) : -0.04000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.130 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.120 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.338 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3408 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2289 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4661 ; 1.648 ; 2.042 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5637 ; 0.995 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 426 ; 5.321 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 122 ;28.981 ;24.098 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 595 ;12.681 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;18.811 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 549 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3673 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 645 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 691 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2384 ; 0.193 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1620 ; 0.170 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1681 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 217 ; 0.153 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 3 ; 0.089 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 25 ; 0.352 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.497 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2749 ; 1.087 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 841 ; 0.262 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3400 ; 1.273 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1512 ; 2.405 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1260 ; 3.273 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 62 A 266 5 REMARK 3 1 B 62 B 266 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1190 ; 0.10 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 B (A): 1464 ; 0.38 ; 5.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1190 ; 1.19 ; 2.00 REMARK 3 LOOSE THERMAL 1 B (A**2): 1464 ; 1.05 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 62 A 84 REMARK 3 ORIGIN FOR THE GROUP (A): -8.9420 8.8110 21.3390 REMARK 3 T TENSOR REMARK 3 T11: -0.0367 T22: 0.0730 REMARK 3 T33: -0.1235 T12: -0.0199 REMARK 3 T13: -0.0733 T23: -0.0186 REMARK 3 L TENSOR REMARK 3 L11: 3.0678 L22: 4.2964 REMARK 3 L33: 1.8852 L12: 0.5329 REMARK 3 L13: -1.7549 L23: -2.2297 REMARK 3 S TENSOR REMARK 3 S11: 0.0160 S12: -0.7446 S13: 0.0986 REMARK 3 S21: 0.4676 S22: -0.0980 S23: -0.3155 REMARK 3 S31: -0.1399 S32: 0.5581 S33: 0.0821 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 85 A 122 REMARK 3 ORIGIN FOR THE GROUP (A): -20.7650 5.4930 14.7690 REMARK 3 T TENSOR REMARK 3 T11: -0.0375 T22: -0.0358 REMARK 3 T33: -0.0566 T12: 0.0039 REMARK 3 T13: 0.0080 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 1.4231 L22: 0.2938 REMARK 3 L33: 1.1603 L12: -0.1907 REMARK 3 L13: -0.2955 L23: 0.0720 REMARK 3 S TENSOR REMARK 3 S11: 0.0281 S12: -0.1684 S13: 0.0420 REMARK 3 S21: 0.0639 S22: -0.0113 S23: 0.0298 REMARK 3 S31: -0.0239 S32: 0.0509 S33: -0.0169 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 123 A 168 REMARK 3 ORIGIN FOR THE GROUP (A): -11.0680 12.4960 3.1910 REMARK 3 T TENSOR REMARK 3 T11: -0.0630 T22: -0.0540 REMARK 3 T33: -0.0147 T12: -0.0050 REMARK 3 T13: -0.0075 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.5150 L22: 0.6221 REMARK 3 L33: 0.4912 L12: -0.2406 REMARK 3 L13: -0.2135 L23: -0.2120 REMARK 3 S TENSOR REMARK 3 S11: 0.0031 S12: -0.0246 S13: 0.0590 REMARK 3 S21: -0.0176 S22: 0.0171 S23: -0.0202 REMARK 3 S31: -0.0227 S32: 0.0292 S33: -0.0202 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 169 A 266 REMARK 3 ORIGIN FOR THE GROUP (A): -21.3840 6.0100 -2.7360 REMARK 3 T TENSOR REMARK 3 T11: -0.0529 T22: -0.0481 REMARK 3 T33: -0.0343 T12: 0.0020 REMARK 3 T13: -0.0065 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.7894 L22: 0.5506 REMARK 3 L33: 0.4538 L12: 0.3003 REMARK 3 L13: -0.5281 L23: -0.1935 REMARK 3 S TENSOR REMARK 3 S11: -0.0294 S12: 0.0401 S13: 0.0150 REMARK 3 S21: -0.0511 S22: -0.0078 S23: 0.0343 REMARK 3 S31: 0.0254 S32: -0.0324 S33: 0.0371 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 62 B 84 REMARK 3 ORIGIN FOR THE GROUP (A): -19.1020 -17.8760 22.8430 REMARK 3 T TENSOR REMARK 3 T11: 0.0083 T22: -0.0265 REMARK 3 T33: -0.0759 T12: 0.0402 REMARK 3 T13: 0.0088 T23: 0.0306 REMARK 3 L TENSOR REMARK 3 L11: 1.8568 L22: 1.4815 REMARK 3 L33: 0.6875 L12: -0.0767 REMARK 3 L13: 0.1819 L23: -0.1148 REMARK 3 S TENSOR REMARK 3 S11: 0.0347 S12: 0.2047 S13: -0.0464 REMARK 3 S21: -0.0807 S22: -0.0741 S23: 0.0107 REMARK 3 S31: 0.0719 S32: 0.0537 S33: 0.0394 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 85 B 122 REMARK 3 ORIGIN FOR THE GROUP (A): -6.7890 -21.3880 28.5900 REMARK 3 T TENSOR REMARK 3 T11: -0.0284 T22: -0.0221 REMARK 3 T33: -0.0454 T12: 0.0503 REMARK 3 T13: 0.0313 T23: 0.0428 REMARK 3 L TENSOR REMARK 3 L11: 1.1041 L22: 1.6439 REMARK 3 L33: 1.9119 L12: -0.3161 REMARK 3 L13: 0.1187 L23: -0.6709 REMARK 3 S TENSOR REMARK 3 S11: 0.0033 S12: 0.1100 S13: 0.0705 REMARK 3 S21: -0.1283 S22: -0.0759 S23: -0.0911 REMARK 3 S31: 0.0698 S32: 0.2120 S33: 0.0726 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 123 B 168 REMARK 3 ORIGIN FOR THE GROUP (A): -5.1150 -19.5400 40.7390 REMARK 3 T TENSOR REMARK 3 T11: -0.0329 T22: -0.0247 REMARK 3 T33: -0.0319 T12: 0.0125 REMARK 3 T13: -0.0056 T23: 0.0286 REMARK 3 L TENSOR REMARK 3 L11: 0.6435 L22: 1.3547 REMARK 3 L33: 2.3711 L12: -0.0934 REMARK 3 L13: 0.6653 L23: -0.5090 REMARK 3 S TENSOR REMARK 3 S11: -0.0176 S12: 0.0175 S13: 0.0172 REMARK 3 S21: 0.1082 S22: -0.0584 S23: -0.1659 REMARK 3 S31: 0.0009 S32: 0.1628 S33: 0.0761 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 169 B 266 REMARK 3 ORIGIN FOR THE GROUP (A): -22.6360 -12.7740 34.5380 REMARK 3 T TENSOR REMARK 3 T11: 0.0007 T22: -0.0685 REMARK 3 T33: -0.0411 T12: 0.0274 REMARK 3 T13: 0.0201 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 1.7010 L22: 0.7024 REMARK 3 L33: 0.7766 L12: -0.5636 REMARK 3 L13: 0.5196 L23: -0.1472 REMARK 3 S TENSOR REMARK 3 S11: -0.0609 S12: -0.0522 S13: 0.0348 REMARK 3 S21: 0.0558 S22: -0.0196 S23: 0.0285 REMARK 3 S31: -0.0232 S32: -0.0161 S33: 0.0805 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3B7G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1000045173. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00595 REMARK 200 MONOCHROMATOR : CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40642 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 20.50 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : 0.02300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 32.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 18.20 REMARK 200 R MERGE FOR SHELL (I) : 0.12600 REMARK 200 R SYM FOR SHELL (I) : 0.04100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 21.30 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2OXC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 200MM AMMONIUM ACETATE, REMARK 280 100MM BIS-TRIS, PH 5.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.53333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 143.06667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 143.06667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 71.53333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 39 REMARK 465 MET A 40 REMARK 465 ARG A 41 REMARK 465 THR A 42 REMARK 465 ALA A 43 REMARK 465 GLN A 44 REMARK 465 ASP A 45 REMARK 465 LEU A 46 REMARK 465 SER A 47 REMARK 465 SER A 48 REMARK 465 PRO A 49 REMARK 465 ARG A 50 REMARK 465 THR A 51 REMARK 465 ARG A 52 REMARK 465 THR A 53 REMARK 465 GLY A 54 REMARK 465 ASP A 55 REMARK 465 VAL A 56 REMARK 465 LEU A 57 REMARK 465 LEU A 58 REMARK 465 ALA A 59 REMARK 465 GLU A 60 REMARK 465 PRO A 61 REMARK 465 ASN A 267 REMARK 465 SER A 268 REMARK 465 SER B 39 REMARK 465 MET B 40 REMARK 465 ARG B 41 REMARK 465 THR B 42 REMARK 465 ALA B 43 REMARK 465 GLN B 44 REMARK 465 ASP B 45 REMARK 465 LEU B 46 REMARK 465 SER B 47 REMARK 465 SER B 48 REMARK 465 PRO B 49 REMARK 465 ARG B 50 REMARK 465 THR B 51 REMARK 465 ARG B 52 REMARK 465 THR B 53 REMARK 465 GLY B 54 REMARK 465 ASP B 55 REMARK 465 VAL B 56 REMARK 465 LEU B 57 REMARK 465 LEU B 58 REMARK 465 ALA B 59 REMARK 465 GLU B 60 REMARK 465 PRO B 61 REMARK 465 ASN B 267 REMARK 465 SER B 268 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 301 O HOH B 473 1.46 REMARK 500 O HOH B 434 O HOH B 473 1.79 REMARK 500 O HOH A 397 O HOH A 467 1.97 REMARK 500 O2B ANP A 300 O HOH A 408 2.04 REMARK 500 O HOH B 369 O HOH B 377 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 304 O HOH B 435 3554 1.70 REMARK 500 O HOH A 474 O HOH B 435 3554 1.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 239 CG - SD - CE ANGL. DEV. = -20.6 DEGREES REMARK 500 ARG B 190 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG B 190 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 221 -134.25 -106.08 REMARK 500 ASP A 260 74.56 -153.82 REMARK 500 SER B 221 -137.80 -111.46 REMARK 500 ASP B 260 73.23 -150.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP B 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OXC RELATED DB: PDB REMARK 900 HUMAN DEAD-BOX RNA HELICASE DDX20, DEAD DOMAIN IN COMPLEX WITH ADP DBREF 3B7G A 41 268 UNP Q9UHI6 DDX20_HUMAN 41 268 DBREF 3B7G B 41 268 UNP Q9UHI6 DDX20_HUMAN 41 268 SEQADV 3B7G SER A 39 UNP Q9UHI6 EXPRESSION TAG SEQADV 3B7G MET A 40 UNP Q9UHI6 EXPRESSION TAG SEQADV 3B7G SER B 39 UNP Q9UHI6 EXPRESSION TAG SEQADV 3B7G MET B 40 UNP Q9UHI6 EXPRESSION TAG SEQRES 1 A 230 SER MET ARG THR ALA GLN ASP LEU SER SER PRO ARG THR SEQRES 2 A 230 ARG THR GLY ASP VAL LEU LEU ALA GLU PRO ALA ASP PHE SEQRES 3 A 230 GLU SER LEU LEU LEU SER ARG PRO VAL LEU GLU GLY LEU SEQRES 4 A 230 ARG ALA ALA GLY PHE GLU ARG PRO SER PRO VAL GLN LEU SEQRES 5 A 230 LYS ALA ILE PRO LEU GLY ARG CYS GLY LEU ASP LEU ILE SEQRES 6 A 230 VAL GLN ALA LYS SER GLY THR GLY LYS THR CYS VAL PHE SEQRES 7 A 230 SER THR ILE ALA LEU ASP SER LEU VAL LEU GLU ASN LEU SEQRES 8 A 230 SER THR GLN ILE LEU ILE LEU ALA PRO THR ARG GLU ILE SEQRES 9 A 230 ALA VAL GLN ILE HIS SER VAL ILE THR ALA ILE GLY ILE SEQRES 10 A 230 LYS MET GLU GLY LEU GLU CYS HIS VAL PHE ILE GLY GLY SEQRES 11 A 230 THR PRO LEU SER GLN ASP LYS THR ARG LEU LYS LYS CYS SEQRES 12 A 230 HIS ILE ALA VAL GLY SER PRO GLY ARG ILE LYS GLN LEU SEQRES 13 A 230 ILE GLU LEU ASP TYR LEU ASN PRO GLY SER ILE ARG LEU SEQRES 14 A 230 PHE ILE LEU ASP GLU ALA ASP LYS LEU LEU GLU GLU GLY SEQRES 15 A 230 SER PHE GLN GLU GLN ILE ASN TRP ILE TYR SER SER LEU SEQRES 16 A 230 PRO ALA SER LYS GLN MET LEU ALA VAL SER ALA THR TYR SEQRES 17 A 230 PRO GLU PHE LEU ALA ASN ALA LEU THR LYS TYR MET ARG SEQRES 18 A 230 ASP PRO THR PHE VAL ARG LEU ASN SER SEQRES 1 B 230 SER MET ARG THR ALA GLN ASP LEU SER SER PRO ARG THR SEQRES 2 B 230 ARG THR GLY ASP VAL LEU LEU ALA GLU PRO ALA ASP PHE SEQRES 3 B 230 GLU SER LEU LEU LEU SER ARG PRO VAL LEU GLU GLY LEU SEQRES 4 B 230 ARG ALA ALA GLY PHE GLU ARG PRO SER PRO VAL GLN LEU SEQRES 5 B 230 LYS ALA ILE PRO LEU GLY ARG CYS GLY LEU ASP LEU ILE SEQRES 6 B 230 VAL GLN ALA LYS SER GLY THR GLY LYS THR CYS VAL PHE SEQRES 7 B 230 SER THR ILE ALA LEU ASP SER LEU VAL LEU GLU ASN LEU SEQRES 8 B 230 SER THR GLN ILE LEU ILE LEU ALA PRO THR ARG GLU ILE SEQRES 9 B 230 ALA VAL GLN ILE HIS SER VAL ILE THR ALA ILE GLY ILE SEQRES 10 B 230 LYS MET GLU GLY LEU GLU CYS HIS VAL PHE ILE GLY GLY SEQRES 11 B 230 THR PRO LEU SER GLN ASP LYS THR ARG LEU LYS LYS CYS SEQRES 12 B 230 HIS ILE ALA VAL GLY SER PRO GLY ARG ILE LYS GLN LEU SEQRES 13 B 230 ILE GLU LEU ASP TYR LEU ASN PRO GLY SER ILE ARG LEU SEQRES 14 B 230 PHE ILE LEU ASP GLU ALA ASP LYS LEU LEU GLU GLU GLY SEQRES 15 B 230 SER PHE GLN GLU GLN ILE ASN TRP ILE TYR SER SER LEU SEQRES 16 B 230 PRO ALA SER LYS GLN MET LEU ALA VAL SER ALA THR TYR SEQRES 17 B 230 PRO GLU PHE LEU ALA ASN ALA LEU THR LYS TYR MET ARG SEQRES 18 B 230 ASP PRO THR PHE VAL ARG LEU ASN SER HET ANP A 300 62 HET ANP B 300 62 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER FORMUL 3 ANP 2(C10 H17 N6 O12 P3) FORMUL 5 HOH *315(H2 O) HELIX 1 1 ASP A 63 LEU A 68 5 6 HELIX 2 2 SER A 70 ALA A 80 1 11 HELIX 3 3 SER A 86 CYS A 98 1 13 HELIX 4 4 GLY A 111 LEU A 124 1 14 HELIX 5 5 THR A 139 GLY A 154 1 16 HELIX 6 6 PRO A 170 LYS A 179 1 10 HELIX 7 7 SER A 187 LEU A 197 1 11 HELIX 8 8 ASN A 201 ILE A 205 5 5 HELIX 9 9 GLU A 212 GLU A 218 1 7 HELIX 10 10 PHE A 222 LEU A 233 1 12 HELIX 11 11 PRO A 247 THR A 255 1 9 HELIX 12 12 ASP B 63 LEU B 68 5 6 HELIX 13 13 SER B 70 ALA B 80 1 11 HELIX 14 14 SER B 86 CYS B 98 1 13 HELIX 15 15 GLY B 111 LEU B 124 1 14 HELIX 16 16 THR B 139 GLY B 154 1 16 HELIX 17 17 ILE B 155 MET B 157 5 3 HELIX 18 18 PRO B 170 LEU B 178 1 9 HELIX 19 19 SER B 187 LEU B 197 1 11 HELIX 20 20 ASN B 201 ILE B 205 5 5 HELIX 21 21 GLU B 212 GLU B 218 1 7 HELIX 22 22 PHE B 222 LEU B 233 1 12 HELIX 23 23 PRO B 247 THR B 255 1 9 SHEET 1 A 7 CYS A 162 PHE A 165 0 SHEET 2 A 7 ILE A 183 GLY A 186 1 O VAL A 185 N PHE A 165 SHEET 3 A 7 ILE A 133 LEU A 136 1 N ILE A 135 O ALA A 184 SHEET 4 A 7 LEU A 207 ASP A 211 1 O ILE A 209 N LEU A 136 SHEET 5 A 7 GLN A 238 SER A 243 1 O GLN A 238 N PHE A 208 SHEET 6 A 7 LEU A 102 GLN A 105 1 N VAL A 104 O ALA A 241 SHEET 7 A 7 THR A 262 VAL A 264 1 O VAL A 264 N ILE A 103 SHEET 1 B 7 CYS B 162 PHE B 165 0 SHEET 2 B 7 ILE B 183 GLY B 186 1 O VAL B 185 N PHE B 165 SHEET 3 B 7 ILE B 133 LEU B 136 1 N ILE B 135 O ALA B 184 SHEET 4 B 7 LEU B 207 ASP B 211 1 O ILE B 209 N LEU B 136 SHEET 5 B 7 GLN B 238 SER B 243 1 O LEU B 240 N LEU B 210 SHEET 6 B 7 LEU B 102 GLN B 105 1 N VAL B 104 O ALA B 241 SHEET 7 B 7 THR B 262 VAL B 264 1 O VAL B 264 N ILE B 103 SITE 1 AC1 15 GLY A 81 PHE A 82 ARG A 84 GLN A 89 SITE 2 AC1 15 SER A 108 GLY A 109 THR A 110 GLY A 111 SITE 3 AC1 15 LYS A 112 THR A 113 CYS A 114 HOH A 385 SITE 4 AC1 15 HOH A 399 HOH A 408 HOH A 467 SITE 1 AC2 14 GLY B 81 PHE B 82 ARG B 84 GLN B 89 SITE 2 AC2 14 SER B 108 GLY B 109 THR B 110 GLY B 111 SITE 3 AC2 14 LYS B 112 THR B 113 CYS B 114 HOH B 352 SITE 4 AC2 14 HOH B 414 HOH B 420 CRYST1 63.560 63.560 214.600 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015733 0.009084 0.000000 0.00000 SCALE2 0.000000 0.018167 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004660 0.00000