PDB Short entry for 3B7O HEADER HYDROLASE 31-OCT-07 3B7O TITLE CRYSTAL STRUCTURE OF THE HUMAN TYROSINE PHOSPHATASE SHP2 (PTPN11) WITH TITLE 2 AN ACCESSIBLE ACTIVE SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 11; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: 'RESIDUES 237-529 (ISOFORM 2)'; COMPND 5 SYNONYM: PROTEIN-TYROSINE PHOSPHATASE 2C, PTP-2C, PTP-1D, SH-PTP3, COMPND 6 SH-PTP2, SHP-2, SHP2; COMPND 7 EC: 3.1.3.48; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPN11, PTP2C, SHPTP2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-R3-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS SHP2, PTPN11, TYROSINE PHOSPHATASE, STRUCTURAL GENOMICS, STRUCTURAL KEYWDS 2 GENOMICS CONSORTIUM, SGC, DEAFNESS, DISEASE MUTATION, HYDROLASE, KEYWDS 3 PHOSPHORYLATION, PROTEIN PHOSPHATASE, SH2 DOMAIN EXPDTA X-RAY DIFFRACTION AUTHOR E.UGOCHUKWU,A.BARR,A.PATEL,O.KING,F.NIESEN,E.SALAH,P.SAVITSKY, AUTHOR 2 E.S.PILKA,J.ELKINS,C.H.ARROWSMITH,J.WEIGELT,A.M.EDWARDS,F.VON DELFT, AUTHOR 3 S.KNAPP,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 7 30-AUG-23 3B7O 1 REMARK SEQADV REVDAT 6 25-OCT-17 3B7O 1 REMARK REVDAT 5 13-JUL-11 3B7O 1 VERSN REVDAT 4 09-JUN-09 3B7O 1 REVDAT REVDAT 3 24-FEB-09 3B7O 1 VERSN REVDAT 2 03-FEB-09 3B7O 1 JRNL REVDAT 1 13-NOV-07 3B7O 0 JRNL AUTH A.J.BARR,E.UGOCHUKWU,W.H.LEE,O.N.KING,P.FILIPPAKOPOULOS, JRNL AUTH 2 I.ALFANO,P.SAVITSKY,N.A.BURGESS-BROWN,S.MULLER,S.KNAPP JRNL TITL LARGE-SCALE STRUCTURAL ANALYSIS OF THE CLASSICAL HUMAN JRNL TITL 2 PROTEIN TYROSINE PHOSPHATOME. JRNL REF CELL(CAMBRIDGE,MASS.) V. 136 352 2009 JRNL REFN ISSN 0092-8674 JRNL PMID 19167335 JRNL DOI 10.1016/J.CELL.2008.11.038 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0040 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 40383 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2157 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2524 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.14 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 134 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2185 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 241 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 19.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.43000 REMARK 3 B22 (A**2) : -0.41000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.079 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.085 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.422 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2274 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1559 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3082 ; 1.593 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3793 ; 0.960 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 282 ; 5.385 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;35.548 ;23.894 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 406 ;13.139 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;18.865 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 336 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2535 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 467 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 422 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1656 ; 0.202 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1141 ; 0.180 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1143 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 164 ; 0.155 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.108 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 47 ; 0.334 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.133 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1489 ; 1.407 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 556 ; 0.349 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2230 ; 1.896 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 995 ; 3.025 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 846 ; 4.455 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 246 A 528 REMARK 3 ORIGIN FOR THE GROUP (A): 17.0831 10.0483 63.9790 REMARK 3 T TENSOR REMARK 3 T11: -0.0450 T22: -0.0346 REMARK 3 T33: -0.0369 T12: -0.0118 REMARK 3 T13: 0.0223 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.5539 L22: 1.0365 REMARK 3 L33: 0.7500 L12: -0.2514 REMARK 3 L13: -0.2284 L23: 0.2766 REMARK 3 S TENSOR REMARK 3 S11: 0.0242 S12: -0.0188 S13: 0.0185 REMARK 3 S21: -0.0773 S22: 0.0019 S23: -0.0581 REMARK 3 S31: 0.0009 S32: -0.0354 S33: -0.0261 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3B7O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1000045181. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00721 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43184 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 34.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : 0.09200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 1.01000 REMARK 200 R SYM FOR SHELL (I) : 1.01000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2SHP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.15 M NA MALATE, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.27750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 83.27750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 22.40650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.24800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 22.40650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.24800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 83.27750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 22.40650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 43.24800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 83.27750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 22.40650 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 43.24800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 214 REMARK 465 HIS A 215 REMARK 465 HIS A 216 REMARK 465 HIS A 217 REMARK 465 HIS A 218 REMARK 465 HIS A 219 REMARK 465 HIS A 220 REMARK 465 SER A 221 REMARK 465 SER A 222 REMARK 465 GLY A 223 REMARK 465 VAL A 224 REMARK 465 ASP A 225 REMARK 465 LEU A 226 REMARK 465 GLY A 227 REMARK 465 THR A 228 REMARK 465 GLU A 229 REMARK 465 ASN A 230 REMARK 465 LEU A 231 REMARK 465 TYR A 232 REMARK 465 PHE A 233 REMARK 465 GLN A 234 REMARK 465 SER A 235 REMARK 465 MET A 236 REMARK 465 ALA A 237 REMARK 465 GLU A 238 REMARK 465 THR A 239 REMARK 465 THR A 240 REMARK 465 ASP A 241 REMARK 465 LYS A 242 REMARK 465 VAL A 243 REMARK 465 LYS A 244 REMARK 465 GLN A 245 REMARK 465 PHE A 314 REMARK 465 GLU A 315 REMARK 465 THR A 316 REMARK 465 LYS A 317 REMARK 465 CYS A 318 REMARK 465 ASN A 319 REMARK 465 ASN A 320 REMARK 465 SER A 321 REMARK 465 LYS A 322 REMARK 465 PRO A 323 REMARK 465 LYS A 324 REMARK 465 ILE A 529 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TRP A 248 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 248 CZ3 CH2 REMARK 470 GLU A 249 CG CD OE1 OE2 REMARK 470 GLU A 252 CG CD OE1 OE2 REMARK 470 LYS A 280 CE NZ REMARK 470 GLU A 299 CD OE1 OE2 REMARK 470 GLU A 313 CG CD OE1 OE2 REMARK 470 GLN A 335 CD OE1 NE2 REMARK 470 HIS A 426 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 481 CG CD OE1 OE2 REMARK 470 GLU A 523 CD OE1 OE2 REMARK 470 ARG A 528 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 477 O HOH A 718 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 343 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 343 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 505 99.34 74.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLT A 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2SHP RELATED DB: PDB REMARK 900 TYROSINE PHOSPHATASE SHP-2 DBREF 3B7O A 237 529 UNP Q06124 PTN11_HUMAN 237 529 SEQADV 3B7O MET A 214 UNP Q06124 EXPRESSION TAG SEQADV 3B7O HIS A 215 UNP Q06124 EXPRESSION TAG SEQADV 3B7O HIS A 216 UNP Q06124 EXPRESSION TAG SEQADV 3B7O HIS A 217 UNP Q06124 EXPRESSION TAG SEQADV 3B7O HIS A 218 UNP Q06124 EXPRESSION TAG SEQADV 3B7O HIS A 219 UNP Q06124 EXPRESSION TAG SEQADV 3B7O HIS A 220 UNP Q06124 EXPRESSION TAG SEQADV 3B7O SER A 221 UNP Q06124 EXPRESSION TAG SEQADV 3B7O SER A 222 UNP Q06124 EXPRESSION TAG SEQADV 3B7O GLY A 223 UNP Q06124 EXPRESSION TAG SEQADV 3B7O VAL A 224 UNP Q06124 EXPRESSION TAG SEQADV 3B7O ASP A 225 UNP Q06124 EXPRESSION TAG SEQADV 3B7O LEU A 226 UNP Q06124 EXPRESSION TAG SEQADV 3B7O GLY A 227 UNP Q06124 EXPRESSION TAG SEQADV 3B7O THR A 228 UNP Q06124 EXPRESSION TAG SEQADV 3B7O GLU A 229 UNP Q06124 EXPRESSION TAG SEQADV 3B7O ASN A 230 UNP Q06124 EXPRESSION TAG SEQADV 3B7O LEU A 231 UNP Q06124 EXPRESSION TAG SEQADV 3B7O TYR A 232 UNP Q06124 EXPRESSION TAG SEQADV 3B7O PHE A 233 UNP Q06124 EXPRESSION TAG SEQADV 3B7O GLN A 234 UNP Q06124 EXPRESSION TAG SEQADV 3B7O SER A 235 UNP Q06124 EXPRESSION TAG SEQADV 3B7O MET A 236 UNP Q06124 EXPRESSION TAG SEQRES 1 A 316 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 316 GLY THR GLU ASN LEU TYR PHE GLN SER MET ALA GLU THR SEQRES 3 A 316 THR ASP LYS VAL LYS GLN GLY PHE TRP GLU GLU PHE GLU SEQRES 4 A 316 THR LEU GLN GLN GLN GLU CYS LYS LEU LEU TYR SER ARG SEQRES 5 A 316 LYS GLU GLY GLN ARG GLN GLU ASN LYS ASN LYS ASN ARG SEQRES 6 A 316 TYR LYS ASN ILE LEU PRO PHE ASP HIS THR ARG VAL VAL SEQRES 7 A 316 LEU HIS ASP GLY ASP PRO ASN GLU PRO VAL SER ASP TYR SEQRES 8 A 316 ILE ASN ALA ASN ILE ILE MET PRO GLU PHE GLU THR LYS SEQRES 9 A 316 CYS ASN ASN SER LYS PRO LYS LYS SER TYR ILE ALA THR SEQRES 10 A 316 GLN GLY CYS LEU GLN ASN THR VAL ASN ASP PHE TRP ARG SEQRES 11 A 316 MET VAL PHE GLN GLU ASN SER ARG VAL ILE VAL MET THR SEQRES 12 A 316 THR LYS GLU VAL GLU ARG GLY LYS SER LYS CYS VAL LYS SEQRES 13 A 316 TYR TRP PRO ASP GLU TYR ALA LEU LYS GLU TYR GLY VAL SEQRES 14 A 316 MET ARG VAL ARG ASN VAL LYS GLU SER ALA ALA HIS ASP SEQRES 15 A 316 TYR THR LEU ARG GLU LEU LYS LEU SER LYS VAL GLY GLN SEQRES 16 A 316 GLY ASN THR GLU ARG THR VAL TRP GLN TYR HIS PHE ARG SEQRES 17 A 316 THR TRP PRO ASP HIS GLY VAL PRO SER ASP PRO GLY GLY SEQRES 18 A 316 VAL LEU ASP PHE LEU GLU GLU VAL HIS HIS LYS GLN GLU SEQRES 19 A 316 SER ILE MET ASP ALA GLY PRO VAL VAL VAL HIS CYS SER SEQRES 20 A 316 ALA GLY ILE GLY ARG THR GLY THR PHE ILE VAL ILE ASP SEQRES 21 A 316 ILE LEU ILE ASP ILE ILE ARG GLU LYS GLY VAL ASP CYS SEQRES 22 A 316 ASP ILE ASP VAL PRO LYS THR ILE GLN MET VAL ARG SER SEQRES 23 A 316 GLN ARG SER GLY MET VAL GLN THR GLU ALA GLN TYR ARG SEQRES 24 A 316 PHE ILE TYR MET ALA VAL GLN HIS TYR ILE GLU THR LEU SEQRES 25 A 316 GLN ARG ARG ILE HET MLT A 1 9 HETNAM MLT D-MALATE HETSYN MLT (2R)-2-HYDROXYBUTANEDIOIC ACID; 2-HYDROXY-SUCCINIC ACID FORMUL 2 MLT C4 H6 O5 FORMUL 3 HOH *241(H2 O) HELIX 1 1 GLY A 246 CYS A 259 1 14 HELIX 2 2 LYS A 260 TYR A 263 5 4 HELIX 3 3 LYS A 266 ASN A 277 5 12 HELIX 4 4 THR A 337 GLU A 348 1 12 HELIX 5 5 PRO A 432 SER A 448 1 17 HELIX 6 6 ILE A 463 GLY A 483 1 21 HELIX 7 7 ASP A 489 SER A 499 1 11 HELIX 8 8 THR A 507 ARG A 528 1 22 SHEET 1 A 9 ARG A 289 VAL A 291 0 SHEET 2 A 9 TYR A 304 ILE A 310 -1 O ALA A 307 N VAL A 290 SHEET 3 A 9 TYR A 327 GLN A 331 -1 O TYR A 327 N ILE A 310 SHEET 4 A 9 VAL A 455 CYS A 459 1 O VAL A 457 N ILE A 328 SHEET 5 A 9 VAL A 352 MET A 355 1 N VAL A 354 O VAL A 456 SHEET 6 A 9 GLN A 408 PHE A 420 1 O TYR A 418 N ILE A 353 SHEET 7 A 9 TYR A 396 LYS A 405 -1 N THR A 397 O HIS A 419 SHEET 8 A 9 MET A 383 ALA A 392 -1 N ARG A 384 O SER A 404 SHEET 9 A 9 LEU A 377 TYR A 380 -1 N TYR A 380 O MET A 383 SHEET 1 B 2 VAL A 360 GLU A 361 0 SHEET 2 B 2 LYS A 364 SER A 365 -1 O LYS A 364 N GLU A 361 SITE 1 AC1 10 THR A 357 CYS A 459 SER A 460 ALA A 461 SITE 2 AC1 10 GLY A 464 ARG A 465 GLN A 510 HOH A 539 SITE 3 AC1 10 HOH A 581 HOH A 725 CRYST1 44.813 86.496 166.555 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022315 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011561 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006004 0.00000