PDB Short entry for 3BEW HEADER IMMUNE SYSTEM 20-NOV-07 3BEW TITLE 10MER CRYSTAL STRUCTURE OF CHICKEN MHC CLASS I HAPLOTYPE B21 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR HISTOCOMPATIBILITY COMPLEX CLASS I GLYCOPROTEIN COMPND 3 HAPLOTYPE B21; COMPND 4 CHAIN: A, D; COMPND 5 FRAGMENT: UNP RESIDUES 1-270; COMPND 6 SYNONYM: MHC CLASS I MOLECULE PRECURSOR, MHC CLASS I ALPHA CHAIN 2, COMPND 7 MHC CLASS I ANTIGEN, MHC CLASS I GLYCOPROTEIN; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 11 CHAIN: B, E; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: 10-MER FROM TUBULIN BETA-6 CHAIN; COMPND 15 CHAIN: C, F; COMPND 16 FRAGMENT: UNP RESIDUES 324-333; COMPND 17 SYNONYM: 10MER PEPTIDE FROM B2, BETA-TUBULIN CLASS-VI; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 STRAIN: B21; SOURCE 6 GENE: BFIV21, B-FIV, BF2; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET22B; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 14 ORGANISM_COMMON: CHICKEN; SOURCE 15 ORGANISM_TAXID: 9031; SOURCE 16 STRAIN: B21; SOURCE 17 GENE: B2M; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 20 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 21 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 22 EXPRESSION_SYSTEM_PLASMID: PET22B; SOURCE 23 MOL_ID: 3; SOURCE 24 SYNTHETIC: YES; SOURCE 25 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN B21 CHICKENS. THE SOURCE 26 PEPTIDE WAS SYNTHESIZED BY SOLID-PHASE SYNTHESIS. KEYWDS MHC CLASS I, CHICKEN, 10MER, BULGE, WATER CUSHION, IMMUNE RESPONSE, KEYWDS 2 IMMUNOGLOBULIN DOMAIN, MHC I, POLYMORPHISM, SECRETED, GTP-BINDING, KEYWDS 3 MICROTUBULE, NUCLEOTIDE-BINDING, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.KOCH,S.CAMP,T.COLLEN,D.AVILA,J.SALOMONSEN,H.J.WALLNY,A.VAN HATEREN, AUTHOR 2 L.HUNT,J.P.JACOB,F.JOHNSTON,D.A.MARSTON,I.SHAW,P.R.DUNBAR, AUTHOR 3 V.CERUNDOLO,E.Y.JONES,J.KAUFMAN REVDAT 3 01-NOV-23 3BEW 1 SEQADV REVDAT 2 24-FEB-09 3BEW 1 VERSN REVDAT 1 01-JAN-08 3BEW 0 JRNL AUTH M.KOCH,S.CAMP,T.COLLEN,D.AVILA,J.SALOMONSEN,H.-J.WALLNY, JRNL AUTH 2 A.VAN HATEREN,L.HUNT,J.P.JACOB,F.JOHNSTON,D.A.MARSTON, JRNL AUTH 3 I.SHAW,P.R.DUNBAR,V.CERUNDOLO,E.Y.JONES,J.KAUFMAN JRNL TITL STRUCTURES OF AN MHC CLASS I MOLECULE FROM B21 CHICKENS JRNL TITL 2 ILLUSTRATE PROMISCUOUS PEPTIDE BINDING JRNL REF IMMUNITY V. 27 885 2007 JRNL REFN ISSN 1074-7613 JRNL PMID 18083574 JRNL DOI 10.1016/J.IMMUNI.2007.11.007 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 30179 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.295 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1514 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1828 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.3040 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.3900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6104 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 128 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.59000 REMARK 3 B22 (A**2) : -1.88000 REMARK 3 B33 (A**2) : -2.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.67000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.800 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.366 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.282 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.883 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.906 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.854 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6261 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4299 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8504 ; 1.336 ; 1.937 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10337 ; 0.974 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 751 ; 6.424 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 322 ;35.044 ;23.354 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 994 ;18.940 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 54 ;14.392 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 871 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7069 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1355 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1202 ; 0.213 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4189 ; 0.202 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2802 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 3526 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 190 ; 0.190 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 14 ; 0.100 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 56 ; 0.209 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.166 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4834 ; 3.684 ; 2.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1537 ; 1.461 ; 2.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6060 ; 4.752 ; 3.500 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3020 ; 5.332 ; 3.500 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2444 ; 6.769 ; 4.900 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 3 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 101 3 REMARK 3 1 D 1 D 101 3 REMARK 3 2 A 107 A 180 3 REMARK 3 2 D 107 D 180 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 1027 ; 0.040 ; 0.050 REMARK 3 LOOSE POSITIONAL 1 A (A): 1427 ; 0.550 ; 5.000 REMARK 3 TIGHT THERMAL 1 A (A**2): 1027 ; 0.130 ; 0.500 REMARK 3 LOOSE THERMAL 1 A (A**2): 1427 ; 3.960 ;10.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 181 A 190 3 REMARK 3 1 D 181 D 190 3 REMARK 3 2 A 195 A 215 3 REMARK 3 2 D 195 D 215 3 REMARK 3 3 A 225 A 270 3 REMARK 3 3 D 225 D 270 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 2 A (A): 446 ; 0.040 ; 0.050 REMARK 3 LOOSE POSITIONAL 2 A (A): 608 ; 0.560 ; 5.000 REMARK 3 TIGHT THERMAL 2 A (A**2): 446 ; 0.170 ; 0.500 REMARK 3 LOOSE THERMAL 2 A (A**2): 608 ; 4.670 ;10.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : B E REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 2 B 99 3 REMARK 3 1 E 2 E 99 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 3 B (A): 565 ; 0.040 ; 0.050 REMARK 3 LOOSE POSITIONAL 3 B (A): 740 ; 0.390 ; 5.000 REMARK 3 TIGHT THERMAL 3 B (A**2): 565 ; 0.110 ; 0.500 REMARK 3 LOOSE THERMAL 3 B (A**2): 740 ; 3.230 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3BEW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1000045433. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97650 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39205 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : 0.09700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.32300 REMARK 200 R SYM FOR SHELL (I) : 0.32300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3BEV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27% PEG 3350, 0.1M HEPES PH 7.0, 0.1M REMARK 280 MGCL2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.35550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5060 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5060 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL F 10 O HOH F 11 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 82 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 271 N - CA - C ANGL. DEV. = 16.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 104 0.71 -66.36 REMARK 500 PHE A 120 -57.41 -121.03 REMARK 500 GLU A 159 -75.48 -120.81 REMARK 500 GLU A 190 142.59 87.99 REMARK 500 ALA A 191 152.55 54.59 REMARK 500 ASP A 192 -62.26 11.45 REMARK 500 ILE A 194 71.00 -157.65 REMARK 500 LEU A 195 -73.15 -69.82 REMARK 500 ASP A 216 58.87 30.83 REMARK 500 ASP A 223 -44.34 157.46 REMARK 500 ASP B 1 101.13 -46.33 REMARK 500 TRP B 59 -3.79 74.48 REMARK 500 ASP D 104 -16.31 -37.28 REMARK 500 ASP D 116 45.14 39.08 REMARK 500 ASP D 119 130.91 -39.19 REMARK 500 GLU D 159 -75.95 -118.73 REMARK 500 GLU D 190 144.13 83.09 REMARK 500 ASP D 192 -61.52 98.99 REMARK 500 ASP D 216 -70.26 67.26 REMARK 500 ASP D 223 -0.27 78.76 REMARK 500 ASP E 1 104.67 -1.97 REMARK 500 TRP E 59 -4.85 74.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BEV RELATED DB: PDB REMARK 900 11MER STRUCTURE WITH CHICKEN MHC CLASS I B21 REMARK 900 RELATED ID: 1OGT RELATED DB: PDB REMARK 900 HLA-B*2705 COMPLEXED WITH THE VASOACTIVE INTESTINAL PEPTIDE TYPE 1 REMARK 900 RECEPTOR (VIPR) PEPTIDE (RESIDUES 400-408) REMARK 900 RELATED ID: 1OGA RELATED DB: PDB REMARK 900 A STRUCTURAL BASIS FOR IMMUNODOMINANT HUMAN T-CELL RECEPTOR REMARK 900 RECOGNITION REMARK 900 RELATED ID: 1SYS RELATED DB: PDB REMARK 900 HLA, B*4403, AND PEPTIDE EEPTVIKKY REMARK 900 RELATED ID: 1A1M RELATED DB: PDB REMARK 900 MHC CLASS I MOLECULE B*5301 COMPLEXED WITH PEPTIDE TPYDINQML FROM REMARK 900 GAG PROTEIN OF HIV2 REMARK 900 RELATED ID: 1IM9 RELATED DB: PDB REMARK 900 THE HUMAN NATURAL KILLER CELL INHIBITORY RECEPTOR KIR2DL1 BOUND TO REMARK 900 ITS MHC LIGAND HLA-CW4 REMARK 900 RELATED ID: 1QQD RELATED DB: PDB REMARK 900 HLA-CW4, A LIGAND FOR THE KIR2D NATURAL KILLER CELL INHIBITORY REMARK 900 RECEPTOR REMARK 900 RELATED ID: 1KPR RELATED DB: PDB REMARK 900 THE HUMAN NON-CLASSICAL MAJOR HISTOCOMPATIBILITY COMPLEX MOLECULE REMARK 900 HLA-E REMARK 900 RELATED ID: 1KTL RELATED DB: PDB REMARK 900 THE HUMAN NON-CLASSICAL MAJOR HISTOCOMPATIBILITY COMPLEX MOLECULE REMARK 900 HLA-E REMARK 900 RELATED ID: 1MHE RELATED DB: PDB REMARK 900 THE HUMAN NON-CLASSICAL MAJOR HISTOCOMPATIBILITY COMPLEX MOLECULE REMARK 900 HLA-E REMARK 900 RELATED ID: 2ESV RELATED DB: PDB REMARK 900 THE HLA-E-VMAPRTLIL/KK50.4 TCR COMPLEX REMARK 900 RELATED ID: 1YDP RELATED DB: PDB REMARK 900 1.9A CRYSTAL STRUCTURE OF HLA-G REMARK 900 RELATED ID: 2DYP RELATED DB: PDB REMARK 900 LILRB2(LIR2/ILT4/CD85D) COMPLEXED WITH HLA-G REMARK 900 RELATED ID: 2D31 RELATED DB: PDB REMARK 900 DISULFIDE-LINKED HLA-G DIMER REMARK 900 RELATED ID: 1KJV RELATED DB: PDB REMARK 900 TAP-B-ASSOCIATED RAT MHC CLASS I MOLECULE DBREF 3BEW A 1 270 UNP Q95601 Q95601_CHICK 22 291 DBREF 3BEW B 1 98 UNP P21611 B2MG_CHICK 22 119 DBREF 3BEW C 1 10 UNP P09207 TBB6_CHICK 324 333 DBREF 3BEW D 1 270 UNP Q95601 Q95601_CHICK 22 291 DBREF 3BEW E 1 98 UNP P21611 B2MG_CHICK 22 119 DBREF 3BEW F 1 10 UNP P09207 TBB6_CHICK 324 333 SEQADV 3BEW ARG A 271 UNP Q95601 EXPRESSION TAG SEQADV 3BEW MET B 0 UNP P21611 INITIATING METHIONINE SEQADV 3BEW ARG D 271 UNP Q95601 EXPRESSION TAG SEQADV 3BEW MET E 0 UNP P21611 INITIATING METHIONINE SEQRES 1 A 271 GLU LEU HIS THR LEU ARG TYR ILE ARG THR ALA MET THR SEQRES 2 A 271 ASP PRO GLY PRO GLY LEU PRO TRP PHE VAL ASP VAL GLY SEQRES 3 A 271 TYR VAL ASP GLY GLU LEU PHE MET HIS TYR ASN SER THR SEQRES 4 A 271 ALA ARG ARG ALA VAL PRO ARG THR GLU TRP ILE ALA ALA SEQRES 5 A 271 ASN THR ASP GLN GLN TYR TRP ASP ARG GLU THR GLN ILE SEQRES 6 A 271 VAL GLN GLY SER GLU GLN ILE ASN ARG GLU ASN LEU ASP SEQRES 7 A 271 ILE LEU ARG ARG ARG TYR ASN GLN THR GLY GLY SER HIS SEQRES 8 A 271 THR VAL GLN TRP MET SER GLY CYS ASP ILE LEU GLU ASP SEQRES 9 A 271 GLY THR ILE ARG GLY TYR HIS GLN ALA ALA TYR ASP GLY SEQRES 10 A 271 ARG ASP PHE VAL ALA PHE ASP LYS GLY THR MET THR LEU SEQRES 11 A 271 THR ALA ALA VAL PRO GLU ALA VAL PRO THR LYS ARG LYS SEQRES 12 A 271 TRP GLU GLU GLY GLY TYR ALA GLU GLY LEU LYS GLN TYR SEQRES 13 A 271 LEU GLU GLU THR CYS VAL GLU TRP LEU ARG ARG TYR VAL SEQRES 14 A 271 GLU TYR GLY LYS ALA GLU LEU GLY ARG ARG GLU ARG PRO SEQRES 15 A 271 GLU VAL ARG VAL TRP GLY LYS GLU ALA ASP GLY ILE LEU SEQRES 16 A 271 THR LEU SER CYS ARG ALA HIS GLY PHE TYR PRO ARG PRO SEQRES 17 A 271 ILE VAL VAL SER TRP LEU LYS ASP GLY ALA VAL ARG GLY SEQRES 18 A 271 GLN ASP ALA GLN SER GLY GLY ILE VAL PRO ASN GLY ASP SEQRES 19 A 271 GLY THR TYR HIS THR TRP VAL THR ILE ASP ALA GLN PRO SEQRES 20 A 271 GLY ASP GLY ASP LYS TYR GLN CYS ARG VAL GLU HIS ALA SEQRES 21 A 271 SER LEU PRO GLN PRO GLY LEU TYR SER TRP ARG SEQRES 1 B 99 MET ASP LEU THR PRO LYS VAL GLN VAL TYR SER ARG PHE SEQRES 2 B 99 PRO ALA SER ALA GLY THR LYS ASN VAL LEU ASN CYS PHE SEQRES 3 B 99 ALA ALA GLY PHE HIS PRO PRO LYS ILE SER ILE THR LEU SEQRES 4 B 99 MET LYS ASP GLY VAL PRO MET GLU GLY ALA GLN TYR SER SEQRES 5 B 99 ASP MET SER PHE ASN ASP ASP TRP THR PHE GLN ARG LEU SEQRES 6 B 99 VAL HIS ALA ASP PHE THR PRO SER SER GLY SER THR TYR SEQRES 7 B 99 ALA CYS LYS VAL GLU HIS GLU THR LEU LYS GLU PRO GLN SEQRES 8 B 99 VAL TYR LYS TRP ASP PRO GLU PHE SEQRES 1 C 10 ARG GLU VAL ASP GLU GLN LEU LEU SER VAL SEQRES 1 D 271 GLU LEU HIS THR LEU ARG TYR ILE ARG THR ALA MET THR SEQRES 2 D 271 ASP PRO GLY PRO GLY LEU PRO TRP PHE VAL ASP VAL GLY SEQRES 3 D 271 TYR VAL ASP GLY GLU LEU PHE MET HIS TYR ASN SER THR SEQRES 4 D 271 ALA ARG ARG ALA VAL PRO ARG THR GLU TRP ILE ALA ALA SEQRES 5 D 271 ASN THR ASP GLN GLN TYR TRP ASP ARG GLU THR GLN ILE SEQRES 6 D 271 VAL GLN GLY SER GLU GLN ILE ASN ARG GLU ASN LEU ASP SEQRES 7 D 271 ILE LEU ARG ARG ARG TYR ASN GLN THR GLY GLY SER HIS SEQRES 8 D 271 THR VAL GLN TRP MET SER GLY CYS ASP ILE LEU GLU ASP SEQRES 9 D 271 GLY THR ILE ARG GLY TYR HIS GLN ALA ALA TYR ASP GLY SEQRES 10 D 271 ARG ASP PHE VAL ALA PHE ASP LYS GLY THR MET THR LEU SEQRES 11 D 271 THR ALA ALA VAL PRO GLU ALA VAL PRO THR LYS ARG LYS SEQRES 12 D 271 TRP GLU GLU GLY GLY TYR ALA GLU GLY LEU LYS GLN TYR SEQRES 13 D 271 LEU GLU GLU THR CYS VAL GLU TRP LEU ARG ARG TYR VAL SEQRES 14 D 271 GLU TYR GLY LYS ALA GLU LEU GLY ARG ARG GLU ARG PRO SEQRES 15 D 271 GLU VAL ARG VAL TRP GLY LYS GLU ALA ASP GLY ILE LEU SEQRES 16 D 271 THR LEU SER CYS ARG ALA HIS GLY PHE TYR PRO ARG PRO SEQRES 17 D 271 ILE VAL VAL SER TRP LEU LYS ASP GLY ALA VAL ARG GLY SEQRES 18 D 271 GLN ASP ALA GLN SER GLY GLY ILE VAL PRO ASN GLY ASP SEQRES 19 D 271 GLY THR TYR HIS THR TRP VAL THR ILE ASP ALA GLN PRO SEQRES 20 D 271 GLY ASP GLY ASP LYS TYR GLN CYS ARG VAL GLU HIS ALA SEQRES 21 D 271 SER LEU PRO GLN PRO GLY LEU TYR SER TRP ARG SEQRES 1 E 99 MET ASP LEU THR PRO LYS VAL GLN VAL TYR SER ARG PHE SEQRES 2 E 99 PRO ALA SER ALA GLY THR LYS ASN VAL LEU ASN CYS PHE SEQRES 3 E 99 ALA ALA GLY PHE HIS PRO PRO LYS ILE SER ILE THR LEU SEQRES 4 E 99 MET LYS ASP GLY VAL PRO MET GLU GLY ALA GLN TYR SER SEQRES 5 E 99 ASP MET SER PHE ASN ASP ASP TRP THR PHE GLN ARG LEU SEQRES 6 E 99 VAL HIS ALA ASP PHE THR PRO SER SER GLY SER THR TYR SEQRES 7 E 99 ALA CYS LYS VAL GLU HIS GLU THR LEU LYS GLU PRO GLN SEQRES 8 E 99 VAL TYR LYS TRP ASP PRO GLU PHE SEQRES 1 F 10 ARG GLU VAL ASP GLU GLN LEU LEU SER VAL FORMUL 7 HOH *128(H2 O) HELIX 1 1 THR A 47 ASN A 53 1 7 HELIX 2 2 ASP A 55 TYR A 84 1 30 HELIX 3 3 VAL A 134 GLU A 136 5 3 HELIX 4 4 ALA A 137 GLY A 147 1 11 HELIX 5 5 GLY A 148 GLU A 159 1 12 HELIX 6 6 GLU A 159 GLY A 172 1 14 HELIX 7 7 GLY A 172 GLY A 177 1 6 HELIX 8 8 ASP A 249 ASP A 251 5 3 HELIX 9 9 ASP C 4 SER C 9 5 6 HELIX 10 10 THR D 47 ASN D 53 1 7 HELIX 11 11 ASP D 55 TYR D 84 1 30 HELIX 12 12 VAL D 134 GLU D 136 5 3 HELIX 13 13 ALA D 137 GLY D 147 1 11 HELIX 14 14 GLY D 148 GLU D 159 1 12 HELIX 15 15 GLU D 159 GLY D 172 1 14 HELIX 16 16 GLY D 172 ARG D 178 1 7 HELIX 17 17 ASP D 249 ASP D 251 5 3 HELIX 18 18 ASP F 4 SER F 9 5 6 SHEET 1 A 8 VAL A 44 PRO A 45 0 SHEET 2 A 8 GLU A 31 ASN A 37 -1 N HIS A 35 O VAL A 44 SHEET 3 A 8 PHE A 22 VAL A 28 -1 N ASP A 24 O TYR A 36 SHEET 4 A 8 HIS A 3 MET A 12 -1 N ARG A 6 O TYR A 27 SHEET 5 A 8 THR A 92 ILE A 101 -1 O SER A 97 N TYR A 7 SHEET 6 A 8 ILE A 107 TYR A 115 -1 O GLN A 112 N MET A 96 SHEET 7 A 8 ARG A 118 ASP A 124 -1 O VAL A 121 N ALA A 113 SHEET 8 A 8 THR A 129 ALA A 132 -1 O THR A 131 N ALA A 122 SHEET 1 B 4 GLU A 183 LYS A 189 0 SHEET 2 B 4 THR A 196 PHE A 204 -1 O SER A 198 N TRP A 187 SHEET 3 B 4 TYR A 237 ASP A 244 -1 O TYR A 237 N PHE A 204 SHEET 4 B 4 GLN A 225 SER A 226 -1 N GLN A 225 O THR A 242 SHEET 1 C 4 GLU A 183 LYS A 189 0 SHEET 2 C 4 THR A 196 PHE A 204 -1 O SER A 198 N TRP A 187 SHEET 3 C 4 TYR A 237 ASP A 244 -1 O TYR A 237 N PHE A 204 SHEET 4 C 4 VAL A 230 PRO A 231 -1 N VAL A 230 O HIS A 238 SHEET 1 D 4 ALA A 218 VAL A 219 0 SHEET 2 D 4 VAL A 210 LYS A 215 -1 N LYS A 215 O ALA A 218 SHEET 3 D 4 TYR A 253 GLU A 258 -1 O ARG A 256 N SER A 212 SHEET 4 D 4 GLY A 266 TYR A 268 -1 O TYR A 268 N CYS A 255 SHEET 1 E 4 LYS B 5 SER B 10 0 SHEET 2 E 4 ASN B 20 PHE B 29 -1 O ASN B 23 N TYR B 9 SHEET 3 E 4 PHE B 61 PHE B 69 -1 O PHE B 61 N PHE B 29 SHEET 4 E 4 GLN B 49 TYR B 50 -1 N GLN B 49 O HIS B 66 SHEET 1 F 4 LYS B 5 SER B 10 0 SHEET 2 F 4 ASN B 20 PHE B 29 -1 O ASN B 23 N TYR B 9 SHEET 3 F 4 PHE B 61 PHE B 69 -1 O PHE B 61 N PHE B 29 SHEET 4 F 4 SER B 54 PHE B 55 -1 N SER B 54 O GLN B 62 SHEET 1 G 4 VAL B 43 PRO B 44 0 SHEET 2 G 4 SER B 35 LYS B 40 -1 N LYS B 40 O VAL B 43 SHEET 3 G 4 TYR B 77 GLU B 82 -1 O ALA B 78 N MET B 39 SHEET 4 G 4 GLN B 90 LYS B 93 -1 O GLN B 90 N VAL B 81 SHEET 1 H 8 VAL D 44 PRO D 45 0 SHEET 2 H 8 GLU D 31 ASN D 37 -1 N HIS D 35 O VAL D 44 SHEET 3 H 8 PHE D 22 VAL D 28 -1 N ASP D 24 O TYR D 36 SHEET 4 H 8 HIS D 3 MET D 12 -1 N ARG D 6 O TYR D 27 SHEET 5 H 8 THR D 92 ILE D 101 -1 O SER D 97 N TYR D 7 SHEET 6 H 8 ILE D 107 TYR D 115 -1 O GLN D 112 N MET D 96 SHEET 7 H 8 ARG D 118 ASP D 124 -1 O ARG D 118 N TYR D 115 SHEET 8 H 8 THR D 129 ALA D 132 -1 O THR D 131 N ALA D 122 SHEET 1 I 4 GLU D 183 LYS D 189 0 SHEET 2 I 4 THR D 196 PHE D 204 -1 O SER D 198 N TRP D 187 SHEET 3 I 4 TYR D 237 ASP D 244 -1 O TYR D 237 N PHE D 204 SHEET 4 I 4 GLN D 225 SER D 226 -1 N GLN D 225 O THR D 242 SHEET 1 J 4 GLU D 183 LYS D 189 0 SHEET 2 J 4 THR D 196 PHE D 204 -1 O SER D 198 N TRP D 187 SHEET 3 J 4 TYR D 237 ASP D 244 -1 O TYR D 237 N PHE D 204 SHEET 4 J 4 VAL D 230 PRO D 231 -1 N VAL D 230 O HIS D 238 SHEET 1 K 4 ALA D 218 VAL D 219 0 SHEET 2 K 4 VAL D 210 LYS D 215 -1 O LYS D 215 N ALA D 218 SHEET 3 K 4 TYR D 253 GLU D 258 -1 O ARG D 256 N SER D 212 SHEET 4 K 4 GLY D 266 SER D 269 -1 O TYR D 268 N CYS D 255 SHEET 1 L 4 LYS E 5 SER E 10 0 SHEET 2 L 4 ASN E 20 PHE E 29 -1 O ASN E 23 N TYR E 9 SHEET 3 L 4 PHE E 61 PHE E 69 -1 O VAL E 65 N CYS E 24 SHEET 4 L 4 GLN E 49 TYR E 50 -1 N GLN E 49 O HIS E 66 SHEET 1 M 4 LYS E 5 SER E 10 0 SHEET 2 M 4 ASN E 20 PHE E 29 -1 O ASN E 23 N TYR E 9 SHEET 3 M 4 PHE E 61 PHE E 69 -1 O VAL E 65 N CYS E 24 SHEET 4 M 4 SER E 54 PHE E 55 -1 N SER E 54 O GLN E 62 SHEET 1 N 4 VAL E 43 PRO E 44 0 SHEET 2 N 4 SER E 35 LYS E 40 -1 N LYS E 40 O VAL E 43 SHEET 3 N 4 TYR E 77 GLU E 82 -1 O ALA E 78 N MET E 39 SHEET 4 N 4 TYR E 92 LYS E 93 -1 O TYR E 92 N CYS E 79 SSBOND 1 CYS A 99 CYS A 161 1555 1555 2.05 SSBOND 2 CYS A 199 CYS A 255 1555 1555 1.99 SSBOND 3 CYS B 24 CYS B 79 1555 1555 2.03 SSBOND 4 CYS D 99 CYS D 161 1555 1555 2.02 SSBOND 5 CYS D 199 CYS D 255 1555 1555 2.03 SSBOND 6 CYS E 24 CYS E 79 1555 1555 2.03 CISPEP 1 PRO A 15 GLY A 16 0 -8.06 CISPEP 2 TYR A 205 PRO A 206 0 0.84 CISPEP 3 HIS B 30 PRO B 31 0 -1.70 CISPEP 4 PRO D 15 GLY D 16 0 -5.07 CISPEP 5 TYR D 205 PRO D 206 0 6.55 CISPEP 6 HIS E 30 PRO E 31 0 5.36 CRYST1 57.393 88.711 100.230 90.00 80.01 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017424 0.000000 -0.003069 0.00000 SCALE2 0.000000 0.011273 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010131 0.00000