PDB Short entry for 3BN3 HEADER CELL ADHESION, IMMUNE SYSTEM 13-DEC-07 3BN3 TITLE CRYSTAL STRUCTURE OF ICAM-5 IN COMPLEX WITH AL I DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRIN ALPHA-L; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: I DOMAIN; COMPND 5 SYNONYM: LEUKOCYTE ADHESION GLYCOPROTEIN LFA-1 ALPHA CHAIN; LFA-1A; COMPND 6 LEUKOCYTE FUNCTION-ASSOCIATED MOLECULE 1 ALPHA CHAIN; CD11A ANTIGEN; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: INTERCELLULAR ADHESION MOLECULE 5; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: N-TERMINAL, TWO DOMAINS; COMPND 13 SYNONYM: ICAM-5; TELENCEPHALIN; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ITGAL, CD11A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: ICAM5, TLCN, TLN; SOURCE 16 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 17 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 19 EXPRESSION_SYSTEM_STRAIN: LEC 3.2.8.1; SOURCE 20 EXPRESSION_SYSTEM_TISSUE: OVARY; SOURCE 21 EXPRESSION_SYSTEM_CELL: HAMPSTER OVARY CELLS; SOURCE 22 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 23 EXPRESSION_SYSTEM_PLASMID: PBJ5-GS KEYWDS ICAM-5, I DOMAIN, INTEGRIN, ALLOSTERIC MOBILITY, CELL ADHESION, KEYWDS 2 IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR H.ZHANG,T.A.SPRINGER,J.-H.WANG REVDAT 6 30-AUG-23 3BN3 1 REMARK REVDAT 5 20-OCT-21 3BN3 1 SEQADV HETSYN REVDAT 4 29-JUL-20 3BN3 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 13-JUL-11 3BN3 1 VERSN REVDAT 2 24-FEB-09 3BN3 1 VERSN REVDAT 1 19-AUG-08 3BN3 0 JRNL AUTH H.ZHANG,J.M.CASASNOVAS,M.JIN,J.H.LIU,C.G.GAHMBERG, JRNL AUTH 2 T.A.SPRINGER,J.-H.WANG JRNL TITL AN UNUSUAL ALLOSTERIC MOBILITY OF THE C-TERMINAL HELIX OF A JRNL TITL 2 HIGH-AFFINITY ALPHA L INTEGRIN I DOMAIN VARIANT BOUND TO JRNL TITL 3 ICAM-5 JRNL REF MOL.CELL V. 31 432 2008 JRNL REFN ISSN 1097-2765 JRNL PMID 18691975 JRNL DOI 10.1016/J.MOLCEL.2008.06.022 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0026 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 71.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 37303 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1863 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2492 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.08 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 134 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3000 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 97 REMARK 3 SOLVENT ATOMS : 226 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 33.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.71000 REMARK 3 B22 (A**2) : 4.05000 REMARK 3 B33 (A**2) : -3.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.159 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.155 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.134 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.384 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3167 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2258 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4283 ; 1.320 ; 2.002 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5420 ; 0.816 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 374 ; 5.929 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 145 ;30.189 ;22.690 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 540 ;13.285 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;13.636 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 480 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3415 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 661 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 497 ; 0.201 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2292 ; 0.189 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1492 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1744 ; 0.100 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 182 ; 0.156 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.068 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.105 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 51 ; 0.220 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.218 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2439 ; 2.855 ; 5.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 753 ; 0.531 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3027 ; 3.484 ;10.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1471 ; 2.709 ; 5.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1256 ; 4.104 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 128 A 160 REMARK 3 ORIGIN FOR THE GROUP (A): -13.3740 -7.4467 40.5065 REMARK 3 T TENSOR REMARK 3 T11: -0.3063 T22: 0.0185 REMARK 3 T33: -0.0761 T12: 0.0208 REMARK 3 T13: -0.0790 T23: -0.1223 REMARK 3 L TENSOR REMARK 3 L11: 2.2786 L22: 9.3261 REMARK 3 L33: 3.2681 L12: -0.4126 REMARK 3 L13: 0.2897 L23: 2.5947 REMARK 3 S TENSOR REMARK 3 S11: -0.0511 S12: -0.4607 S13: 0.2087 REMARK 3 S21: 0.6153 S22: 0.3843 S23: -0.8824 REMARK 3 S31: 0.3911 S32: 0.7099 S33: -0.3332 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 161 A 251 REMARK 3 ORIGIN FOR THE GROUP (A): -18.0757 -1.2018 34.1248 REMARK 3 T TENSOR REMARK 3 T11: -0.1865 T22: -0.2055 REMARK 3 T33: 0.0047 T12: -0.0521 REMARK 3 T13: 0.0067 T23: -0.0738 REMARK 3 L TENSOR REMARK 3 L11: 3.0865 L22: 4.0224 REMARK 3 L33: 3.6903 L12: -0.8144 REMARK 3 L13: -1.0273 L23: 1.8414 REMARK 3 S TENSOR REMARK 3 S11: 0.0717 S12: -0.2335 S13: 0.6265 REMARK 3 S21: -0.0977 S22: 0.1168 S23: -0.3636 REMARK 3 S31: -0.3380 S32: 0.1890 S33: -0.1885 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 252 A 292 REMARK 3 ORIGIN FOR THE GROUP (A): -5.0674 -10.9471 29.0331 REMARK 3 T TENSOR REMARK 3 T11: -0.4889 T22: -0.0097 REMARK 3 T33: 0.0715 T12: -0.0405 REMARK 3 T13: 0.1434 T23: -0.1603 REMARK 3 L TENSOR REMARK 3 L11: 6.0553 L22: 17.5310 REMARK 3 L33: 3.8565 L12: 2.5312 REMARK 3 L13: -0.2833 L23: 0.5706 REMARK 3 S TENSOR REMARK 3 S11: 0.0872 S12: -0.1905 S13: -0.2262 REMARK 3 S21: -0.5632 S22: 0.3590 S23: -1.6492 REMARK 3 S31: -0.0029 S32: 0.9762 S33: -0.4462 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 293 A 307 REMARK 3 ORIGIN FOR THE GROUP (A): -1.1366 -31.8040 36.2154 REMARK 3 T TENSOR REMARK 3 T11: 0.0172 T22: 0.4127 REMARK 3 T33: 0.5090 T12: 0.1295 REMARK 3 T13: 0.0197 T23: 0.4244 REMARK 3 L TENSOR REMARK 3 L11: 14.8948 L22: 3.4198 REMARK 3 L33: 25.9190 L12: -5.5531 REMARK 3 L13: 3.4641 L23: 4.5300 REMARK 3 S TENSOR REMARK 3 S11: 0.4120 S12: 0.2949 S13: 0.5984 REMARK 3 S21: 1.5243 S22: 0.1277 S23: 0.2900 REMARK 3 S31: -0.7854 S32: -0.2675 S33: -0.5396 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 21 REMARK 3 ORIGIN FOR THE GROUP (A): -26.5476 -33.1425 31.1120 REMARK 3 T TENSOR REMARK 3 T11: -0.0975 T22: -0.0329 REMARK 3 T33: -0.0356 T12: 0.0112 REMARK 3 T13: 0.0136 T23: 0.0796 REMARK 3 L TENSOR REMARK 3 L11: 0.1215 L22: 6.1054 REMARK 3 L33: 5.3963 L12: -0.0689 REMARK 3 L13: -0.5347 L23: -3.9938 REMARK 3 S TENSOR REMARK 3 S11: 0.3135 S12: -0.2247 S13: -0.4246 REMARK 3 S21: -0.3021 S22: 0.3097 S23: 0.7324 REMARK 3 S31: 0.4806 S32: -0.5948 S33: -0.6231 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 22 B 54 REMARK 3 ORIGIN FOR THE GROUP (A): -20.5993 -29.0049 21.9585 REMARK 3 T TENSOR REMARK 3 T11: -0.1436 T22: -0.0994 REMARK 3 T33: -0.2035 T12: 0.0435 REMARK 3 T13: 0.1020 T23: 0.0385 REMARK 3 L TENSOR REMARK 3 L11: 2.9984 L22: 7.5962 REMARK 3 L33: 8.5632 L12: -0.6686 REMARK 3 L13: 3.5653 L23: -0.4680 REMARK 3 S TENSOR REMARK 3 S11: 0.0655 S12: 0.3243 S13: -0.0852 REMARK 3 S21: -0.7275 S22: -0.1892 S23: -0.0660 REMARK 3 S31: 0.2427 S32: 0.3512 S33: 0.1237 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 55 B 85 REMARK 3 ORIGIN FOR THE GROUP (A): -24.3973 -25.9849 30.8679 REMARK 3 T TENSOR REMARK 3 T11: -0.1249 T22: -0.1086 REMARK 3 T33: -0.0585 T12: -0.0708 REMARK 3 T13: 0.0363 T23: 0.0362 REMARK 3 L TENSOR REMARK 3 L11: 0.1521 L22: 5.2831 REMARK 3 L33: 10.6552 L12: -0.8875 REMARK 3 L13: 0.7125 L23: -3.2831 REMARK 3 S TENSOR REMARK 3 S11: -0.1498 S12: -0.1624 S13: 0.1929 REMARK 3 S21: 0.1642 S22: -0.0242 S23: -0.1151 REMARK 3 S31: -0.6559 S32: -0.3464 S33: 0.1739 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 86 B 112 REMARK 3 ORIGIN FOR THE GROUP (A): -19.7186 -37.5402 70.4138 REMARK 3 T TENSOR REMARK 3 T11: -0.0139 T22: -0.0491 REMARK 3 T33: -0.1769 T12: 0.0027 REMARK 3 T13: -0.0789 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 1.2084 L22: 0.0873 REMARK 3 L33: 19.6866 L12: 0.0130 REMARK 3 L13: 2.3638 L23: 0.3335 REMARK 3 S TENSOR REMARK 3 S11: -0.0555 S12: -0.1672 S13: 0.1089 REMARK 3 S21: 0.0273 S22: 0.0034 S23: -0.3068 REMARK 3 S31: -0.4506 S32: 0.3978 S33: 0.0521 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 113 B 181 REMARK 3 ORIGIN FOR THE GROUP (A): -27.5334 -39.8295 63.2714 REMARK 3 T TENSOR REMARK 3 T11: -0.0679 T22: -0.1502 REMARK 3 T33: -0.2441 T12: 0.0581 REMARK 3 T13: -0.0417 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 2.4615 L22: 0.0840 REMARK 3 L33: 8.8516 L12: 0.4127 REMARK 3 L13: 2.5088 L23: 0.4459 REMARK 3 S TENSOR REMARK 3 S11: 0.0399 S12: -0.4655 S13: -0.0521 REMARK 3 S21: 0.1646 S22: -0.0585 S23: -0.0923 REMARK 3 S31: -0.1218 S32: -0.5812 S33: 0.0186 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 182 B 196 REMARK 3 ORIGIN FOR THE GROUP (A): -18.8366 -43.1234 77.5868 REMARK 3 T TENSOR REMARK 3 T11: -0.1296 T22: 0.0578 REMARK 3 T33: -0.1684 T12: -0.0015 REMARK 3 T13: -0.0898 T23: 0.0256 REMARK 3 L TENSOR REMARK 3 L11: 3.1709 L22: 4.8114 REMARK 3 L33: 37.3759 L12: 0.1416 REMARK 3 L13: 7.2532 L23: 3.6632 REMARK 3 S TENSOR REMARK 3 S11: 0.1935 S12: -0.5291 S13: 0.0340 REMARK 3 S21: 0.6629 S22: -0.0408 S23: -0.0617 REMARK 3 S31: 1.4154 S32: 0.6150 S33: -0.1528 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3BN3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000045720. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37303 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.099 REMARK 200 RESOLUTION RANGE LOW (A) : 71.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : 0.05400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.45400 REMARK 200 R SYM FOR SHELL (I) : 0.47100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.760 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB IDS 1T0P AND 1IC1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH7.5, 7.5%PEG8000, REMARK 280 10%GLYCEROL, 5MM MAGNESIUM CHLORIDE, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.89650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.93550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.75350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.93550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.89650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.75350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 313 O HOH B 314 2.06 REMARK 500 ND2 ASN B 43 C2 NAG B 199 2.10 REMARK 500 O ASN A 163 O HOH A 344 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 174 -102.95 -148.04 REMARK 500 LYS A 190 -48.46 66.19 REMARK 500 LEU A 204 -144.57 -124.09 REMARK 500 ASN B 43 29.84 -147.01 REMARK 500 ALA B 73 -120.64 52.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 1 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 139 OG REMARK 620 2 SER A 141 OG 87.6 REMARK 620 3 THR A 206 OG1 92.4 178.8 REMARK 620 4 HOH A 308 O 173.2 96.9 83.1 REMARK 620 5 HOH A 309 O 86.1 84.3 94.4 89.2 REMARK 620 6 GLU B 37 OE2 94.4 90.1 91.1 90.7 174.4 REMARK 620 N 1 2 3 4 5 DBREF 3BN3 A 129 307 UNP P20701 ITAL_HUMAN 154 332 DBREF 3BN3 B 1 196 UNP Q9UMF0 ICAM5_HUMAN 32 227 SEQADV 3BN3 MET A 128 UNP P20701 INITIATING METHIONINE SEQADV 3BN3 TRP A 189 UNP P20701 ARG 214 VARIANT SEQADV 3BN3 SER A 265 UNP P20701 PHE 290 ENGINEERED MUTATION SEQADV 3BN3 GLY A 292 UNP P20701 PHE 317 ENGINEERED MUTATION SEQRES 1 A 180 MET ASN VAL ASP LEU VAL PHE LEU PHE ASP GLY SER MET SEQRES 2 A 180 SER LEU GLN PRO ASP GLU PHE GLN LYS ILE LEU ASP PHE SEQRES 3 A 180 MET LYS ASP VAL MET LYS LYS LEU SER ASN THR SER TYR SEQRES 4 A 180 GLN PHE ALA ALA VAL GLN PHE SER THR SER TYR LYS THR SEQRES 5 A 180 GLU PHE ASP PHE SER ASP TYR VAL LYS TRP LYS ASP PRO SEQRES 6 A 180 ASP ALA LEU LEU LYS HIS VAL LYS HIS MET LEU LEU LEU SEQRES 7 A 180 THR ASN THR PHE GLY ALA ILE ASN TYR VAL ALA THR GLU SEQRES 8 A 180 VAL PHE ARG GLU GLU LEU GLY ALA ARG PRO ASP ALA THR SEQRES 9 A 180 LYS VAL LEU ILE ILE ILE THR ASP GLY GLU ALA THR ASP SEQRES 10 A 180 SER GLY ASN ILE ASP ALA ALA LYS ASP ILE ILE ARG TYR SEQRES 11 A 180 ILE ILE GLY ILE GLY LYS HIS SER GLN THR LYS GLU SER SEQRES 12 A 180 GLN GLU THR LEU HIS LYS PHE ALA SER LYS PRO ALA SER SEQRES 13 A 180 GLU PHE VAL LYS ILE LEU ASP THR GLY GLU LYS LEU LYS SEQRES 14 A 180 ASP LEU PHE THR GLU LEU GLN LYS LYS ILE TYR SEQRES 1 B 196 GLU PRO PHE TRP ALA ASP LEU GLN PRO ARG VAL ALA PHE SEQRES 2 B 196 VAL GLU ARG GLY GLY SER LEU TRP LEU ASN CYS SER THR SEQRES 3 B 196 ASN CYS PRO ARG PRO GLU ARG GLY GLY LEU GLU THR SER SEQRES 4 B 196 LEU ARG ARG ASN GLY THR GLN ARG GLY LEU ARG TRP LEU SEQRES 5 B 196 ALA ARG GLN LEU VAL ASP ILE ARG GLU PRO GLU THR GLN SEQRES 6 B 196 PRO VAL CYS PHE PHE ARG CYS ALA ARG ARG THR LEU GLN SEQRES 7 B 196 ALA ARG GLY LEU ILE ARG THR PHE GLN ARG PRO ASP ARG SEQRES 8 B 196 VAL GLU LEU MET PRO LEU PRO PRO TRP GLN PRO VAL GLY SEQRES 9 B 196 GLU ASN PHE THR LEU SER CYS ARG VAL PRO GLY ALA GLY SEQRES 10 B 196 PRO ARG ALA SER LEU THR LEU THR LEU LEU ARG GLY ALA SEQRES 11 B 196 GLN GLU LEU ILE ARG ARG SER PHE ALA GLY GLU PRO PRO SEQRES 12 B 196 ARG ALA ARG GLY ALA VAL LEU THR ALA THR VAL LEU ALA SEQRES 13 B 196 ARG ARG GLU ASP HIS GLY ALA ASN PHE SER CYS ARG ALA SEQRES 14 B 196 GLU LEU ASP LEU ARG PRO HIS GLY LEU GLY LEU PHE GLU SEQRES 15 B 196 ASN SER SER ALA PRO ARG GLU LEU ARG THR PHE SER LEU SEQRES 16 B 196 SER MODRES 3BN3 ASN B 23 ASN GLYCOSYLATION SITE MODRES 3BN3 ASN B 43 ASN GLYCOSYLATION SITE MODRES 3BN3 ASN B 106 ASN GLYCOSYLATION SITE MODRES 3BN3 ASN B 164 ASN GLYCOSYLATION SITE MODRES 3BN3 ASN B 183 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET MG A 1 1 HET NAG B 199 14 HET NAG B 200 14 HET NAG B 201 14 HET NAG B 202 14 HET GOL B 203 6 HET GOL B 204 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 6(C8 H15 N O6) FORMUL 4 MG MG 2+ FORMUL 9 GOL 2(C3 H8 O3) FORMUL 11 HOH *226(H2 O) HELIX 1 1 GLN A 143 LEU A 161 1 19 HELIX 2 2 ASP A 182 LYS A 190 1 9 HELIX 3 3 ASP A 191 LEU A 196 1 6 HELIX 4 4 ASN A 207 VAL A 219 1 13 HELIX 5 5 ARG A 221 GLY A 225 5 5 HELIX 6 6 ILE A 248 LYS A 252 5 5 HELIX 7 7 GLY A 262 GLN A 266 5 5 HELIX 8 8 THR A 267 ALA A 278 1 12 HELIX 9 9 PRO A 281 PHE A 285 1 5 HELIX 10 10 GLU A 293 TYR A 307 1 15 HELIX 11 11 PRO B 118 ALA B 120 5 3 HELIX 12 12 ARG B 157 HIS B 161 5 5 HELIX 13 13 ARG B 174 GLY B 177 5 4 SHEET 1 A 6 TYR A 177 PHE A 181 0 SHEET 2 A 6 TYR A 166 PHE A 173 -1 N GLN A 172 O LYS A 178 SHEET 3 A 6 VAL A 130 ASP A 137 1 N PHE A 134 O VAL A 171 SHEET 4 A 6 THR A 231 THR A 238 1 O ILE A 235 N LEU A 135 SHEET 5 A 6 ILE A 255 GLY A 260 1 O ILE A 259 N ILE A 236 SHEET 6 A 6 VAL A 286 ILE A 288 1 O LYS A 287 N GLY A 260 SHEET 1 B 4 ALA B 5 GLN B 8 0 SHEET 2 B 4 GLY B 18 THR B 26 -1 O SER B 25 N ASP B 6 SHEET 3 B 4 TRP B 51 ILE B 59 -1 O LEU B 52 N CYS B 24 SHEET 4 B 4 ARG B 41 GLY B 48 -1 N GLN B 46 O ALA B 53 SHEET 1 C 3 VAL B 11 GLU B 15 0 SHEET 2 C 3 LEU B 82 PHE B 86 1 O ARG B 84 N VAL B 14 SHEET 3 C 3 GLU B 63 THR B 64 -1 N THR B 64 O ILE B 83 SHEET 1 D 3 ARG B 33 GLU B 37 0 SHEET 2 D 3 VAL B 67 CYS B 72 -1 O VAL B 67 N GLU B 37 SHEET 3 D 3 ARG B 75 ARG B 80 -1 O ARG B 75 N CYS B 72 SHEET 1 E 3 GLU B 93 LEU B 94 0 SHEET 2 E 3 ASN B 106 VAL B 113 -1 O ARG B 112 N GLU B 93 SHEET 3 E 3 ALA B 148 LEU B 155 -1 O ALA B 152 N LEU B 109 SHEET 1 F 2 GLN B 101 PRO B 102 0 SHEET 2 F 2 THR B 192 PHE B 193 1 O PHE B 193 N GLN B 101 SHEET 1 G 4 GLN B 131 SER B 137 0 SHEET 2 G 4 LEU B 122 ARG B 128 -1 N LEU B 126 O LEU B 133 SHEET 3 G 4 ASN B 164 ASP B 172 -1 O SER B 166 N LEU B 127 SHEET 4 G 4 LEU B 180 SER B 184 -1 O PHE B 181 N LEU B 171 SHEET 1 H 4 GLN B 131 SER B 137 0 SHEET 2 H 4 LEU B 122 ARG B 128 -1 N LEU B 126 O LEU B 133 SHEET 3 H 4 ASN B 164 ASP B 172 -1 O SER B 166 N LEU B 127 SHEET 4 H 4 ARG B 188 GLU B 189 -1 O ARG B 188 N PHE B 165 SSBOND 1 CYS B 24 CYS B 68 1555 1555 2.05 SSBOND 2 CYS B 28 CYS B 72 1555 1555 2.08 SSBOND 3 CYS B 111 CYS B 167 1555 1555 2.09 LINK ND2 ASN B 23 C1 NAG C 1 1555 1555 1.46 LINK ND2 ASN B 43 C1 NAG B 199 1555 1555 1.44 LINK ND2 ASN B 106 C1 NAG B 200 1555 1555 1.46 LINK ND2 ASN B 164 C1 NAG B 201 1555 1555 1.45 LINK ND2 ASN B 183 C1 NAG B 202 1555 1555 1.46 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK MG MG A 1 OG SER A 139 1555 1555 2.10 LINK MG MG A 1 OG SER A 141 1555 1555 2.05 LINK MG MG A 1 OG1 THR A 206 1555 1555 2.21 LINK MG MG A 1 O HOH A 308 1555 1555 2.10 LINK MG MG A 1 O HOH A 309 1555 1555 1.96 LINK MG MG A 1 OE2 GLU B 37 1555 1555 1.90 CISPEP 1 LYS A 280 PRO A 281 0 3.92 CISPEP 2 GLN B 8 PRO B 9 0 -5.70 CISPEP 3 GLY B 117 PRO B 118 0 9.71 CRYST1 61.793 71.507 143.871 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016183 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013985 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006951 0.00000