PDB Short entry for 3BPN HEADER CYTOKINE/CYTOKINE RECEPTOR 18-DEC-07 3BPN TITLE CRYSTAL STRUCTURE OF THE IL4-IL4R-IL13RA TERNARY COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERLEUKIN-4; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IL-4, B-CELL STIMULATORY FACTOR 1, BSF-1, LYMPHOCYTE COMPND 5 STIMULATORY FACTOR 1, BINETRAKIN, PITRAKINRA; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: INTERLEUKIN-4 RECEPTOR ALPHA CHAIN; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: EXTRACELLULAR DOMAIN, RESIDUES 27-227; COMPND 11 SYNONYM: IL-4R-ALPHA, CD124 ANTIGEN, SOLUBLE INTERLEUKIN-4 RECEPTOR COMPND 12 ALPHA CHAIN; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: INTERLEUKIN-13 RECEPTOR ALPHA-1 CHAIN; COMPND 16 CHAIN: C; COMPND 17 FRAGMENT: EXTRACELLULAR DOMAIN, RESIDUES 29-342; COMPND 18 SYNONYM: IL-13R-ALPHA-1, IL-13RA-1, CANCER/TESTIS ANTIGEN 19, CT19, COMPND 19 CD213A1 ANTIGEN; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IL4; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: IL4R, 582J2.1, IL4RA; SOURCE 15 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 16 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 21 ORGANISM_COMMON: HUMAN; SOURCE 22 ORGANISM_TAXID: 9606; SOURCE 23 GENE: IL13RA1, IL13R, IL13RA; SOURCE 24 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 25 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 26 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 27 EXPRESSION_SYSTEM_STRAIN: SF9 KEYWDS IL4, IL13, IL13R, IL4R, CYTOKINE, RECEPTOR, B-CELL ACTIVATION, KEYWDS 2 GLYCOPROTEIN, GROWTH FACTOR, SECRETED, IMMUNE RESPONSE, MEMBRANE, KEYWDS 3 PHOSPHOPROTEIN, TRANSMEMBRANE, CYTOKINE-CYTOKINE RECEPTOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.C.GARCIA REVDAT 7 20-OCT-21 3BPN 1 REMARK SEQADV HETSYN REVDAT 6 29-JUL-20 3BPN 1 COMPND REMARK SEQADV HETNAM REVDAT 6 2 1 LINK SITE REVDAT 5 13-JUL-11 3BPN 1 VERSN REVDAT 4 24-FEB-09 3BPN 1 VERSN REVDAT 3 19-FEB-08 3BPN 1 JRNL REVDAT 2 12-FEB-08 3BPN 1 REMARK REVDAT 1 05-FEB-08 3BPN 0 JRNL AUTH S.L.LAPORTE,Z.S.JUO,J.VACLAVIKOVA,L.A.COLF,X.QI,N.M.HELLER, JRNL AUTH 2 A.D.KEEGAN,K.C.GARCIA JRNL TITL MOLECULAR AND STRUCTURAL BASIS OF CYTOKINE RECEPTOR JRNL TITL 2 PLEIOTROPY IN THE INTERLEUKIN-4/13 SYSTEM. JRNL REF CELL(CAMBRIDGE,MASS.) V. 132 259 2008 JRNL REFN ISSN 0092-8674 JRNL PMID 18243101 JRNL DOI 10.1016/J.CELL.2007.12.030 REMARK 2 REMARK 2 RESOLUTION. 3.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 16508 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.304 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 875 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.02 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1174 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.3370 REMARK 3 BIN FREE R VALUE SET COUNT : 54 REMARK 3 BIN FREE R VALUE : 0.4330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5014 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 52 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.45000 REMARK 3 B22 (A**2) : -0.68000 REMARK 3 B33 (A**2) : -0.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 3.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.519 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.426 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 49.084 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.901 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.829 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5154 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7026 ; 1.101 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 615 ; 5.044 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 239 ;39.127 ;24.435 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 855 ;16.166 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;15.778 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 777 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3895 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2277 ; 0.233 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3469 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 168 ; 0.163 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 37 ; 0.273 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.069 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3188 ; 1.655 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5062 ; 1.958 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2271 ; 1.219 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1964 ; 1.774 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 128 REMARK 3 ORIGIN FOR THE GROUP (A): 18.9404 -10.7216 19.1555 REMARK 3 T TENSOR REMARK 3 T11: -0.0390 T22: -0.1280 REMARK 3 T33: -0.1055 T12: 0.2016 REMARK 3 T13: 0.0414 T23: 0.0753 REMARK 3 L TENSOR REMARK 3 L11: 3.0088 L22: 3.1895 REMARK 3 L33: 5.5942 L12: 0.4038 REMARK 3 L13: -0.4271 L23: 1.6720 REMARK 3 S TENSOR REMARK 3 S11: 0.3373 S12: 0.3304 S13: -0.0090 REMARK 3 S21: -0.3341 S22: -0.0491 S23: -0.0094 REMARK 3 S31: -0.1503 S32: -0.3822 S33: -0.2882 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 94 REMARK 3 ORIGIN FOR THE GROUP (A): -2.0513 11.5234 23.9875 REMARK 3 T TENSOR REMARK 3 T11: 0.0851 T22: 0.0153 REMARK 3 T33: -0.1386 T12: 0.3080 REMARK 3 T13: 0.1097 T23: 0.1596 REMARK 3 L TENSOR REMARK 3 L11: 5.3043 L22: 5.9684 REMARK 3 L33: 0.2085 L12: -3.3050 REMARK 3 L13: -0.9858 L23: 0.9288 REMARK 3 S TENSOR REMARK 3 S11: 0.1471 S12: 0.3854 S13: 0.3166 REMARK 3 S21: -0.3536 S22: -0.2217 S23: 0.0321 REMARK 3 S31: 0.1161 S32: -0.0107 S33: 0.0746 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 95 B 198 REMARK 3 ORIGIN FOR THE GROUP (A): -3.9383 -7.8678 49.1845 REMARK 3 T TENSOR REMARK 3 T11: -0.1599 T22: 0.0922 REMARK 3 T33: -0.0643 T12: 0.1558 REMARK 3 T13: 0.0134 T23: 0.0963 REMARK 3 L TENSOR REMARK 3 L11: 1.7608 L22: 1.8506 REMARK 3 L33: 5.4340 L12: 0.2115 REMARK 3 L13: -2.2922 L23: -1.0277 REMARK 3 S TENSOR REMARK 3 S11: 0.1580 S12: -0.0068 S13: -0.0278 REMARK 3 S21: -0.0076 S22: 0.0165 S23: 0.2287 REMARK 3 S31: -0.3151 S32: -0.5635 S33: -0.1745 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 30 C 121 REMARK 3 ORIGIN FOR THE GROUP (A): 33.5381 -27.6885 6.8606 REMARK 3 T TENSOR REMARK 3 T11: 0.0546 T22: -0.0645 REMARK 3 T33: -0.1115 T12: 0.1637 REMARK 3 T13: 0.0216 T23: -0.0799 REMARK 3 L TENSOR REMARK 3 L11: 3.5946 L22: 6.4239 REMARK 3 L33: 7.0641 L12: 0.7325 REMARK 3 L13: -2.1954 L23: -2.8979 REMARK 3 S TENSOR REMARK 3 S11: 0.1521 S12: 0.5549 S13: 0.2300 REMARK 3 S21: -0.7265 S22: 0.0088 S23: 0.2272 REMARK 3 S31: -0.0314 S32: -0.7223 S33: -0.1609 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 122 C 223 REMARK 3 ORIGIN FOR THE GROUP (A): 34.4577 -37.8447 35.0465 REMARK 3 T TENSOR REMARK 3 T11: -0.0700 T22: -0.1434 REMARK 3 T33: -0.0869 T12: 0.0309 REMARK 3 T13: 0.0098 T23: 0.0280 REMARK 3 L TENSOR REMARK 3 L11: 3.6913 L22: 2.0701 REMARK 3 L33: 3.9688 L12: 0.1942 REMARK 3 L13: -0.2691 L23: 1.3309 REMARK 3 S TENSOR REMARK 3 S11: -0.0252 S12: 0.0833 S13: 0.1020 REMARK 3 S21: -0.2108 S22: 0.0198 S23: -0.0739 REMARK 3 S31: -0.0565 S32: 0.0250 S33: 0.0054 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 224 C 338 REMARK 3 ORIGIN FOR THE GROUP (A): 15.3499 -17.5263 53.1435 REMARK 3 T TENSOR REMARK 3 T11: -0.0867 T22: -0.1207 REMARK 3 T33: -0.0577 T12: -0.0101 REMARK 3 T13: -0.0265 T23: -0.0135 REMARK 3 L TENSOR REMARK 3 L11: 2.8848 L22: 1.1229 REMARK 3 L33: 5.7256 L12: -0.9397 REMARK 3 L13: -2.7669 L23: 1.5041 REMARK 3 S TENSOR REMARK 3 S11: 0.1194 S12: 0.0035 S13: 0.0264 REMARK 3 S21: 0.0420 S22: -0.1235 S23: 0.0293 REMARK 3 S31: -0.0874 S32: -0.1706 S33: 0.0041 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3BPN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000045810. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17403 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.55400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG8K, 0.1M CACODYLATE PH 6.5, REMARK 280 0.16M CALCIUM ACETATE, 20% GLYCEROL, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.42050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 1 REMARK 465 LYS A 2 REMARK 465 SER A 129 REMARK 465 ALA B -2 REMARK 465 ASP B -1 REMARK 465 SER B 199 REMARK 465 TYR B 200 REMARK 465 ARG B 201 REMARK 465 GLU B 202 REMARK 465 THR C 29 REMARK 465 LYS C 193 REMARK 465 ASP C 194 REMARK 465 SER C 195 REMARK 465 SER C 196 REMARK 465 PHE C 197 REMARK 465 GLU C 198 REMARK 465 ASN C 284 REMARK 465 PRO C 285 REMARK 465 GLU C 286 REMARK 465 PHE C 287 REMARK 465 GLU C 288 REMARK 465 ARG C 289 REMARK 465 ASN C 290 REMARK 465 VAL C 291 REMARK 465 LYS C 339 REMARK 465 ARG C 340 REMARK 465 ASN C 341 REMARK 465 SER C 342 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 CYS B 182 SG REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 SER C 60 OG REMARK 480 ASN C 61 CG OD1 ND2 REMARK 480 GLU C 106 CG CD OE1 OE2 REMARK 480 GLU C 108 CG CD OE1 OE2 REMARK 480 LYS C 109 CG CD CE NZ REMARK 480 SER C 111 OG REMARK 480 ILE C 112 CG1 CG2 CD1 REMARK 480 VAL C 192 CG1 CG2 REMARK 480 GLU C 283 CG CD OE1 OE2 REMARK 480 GLU C 292 CG CD OE1 OE2 REMARK 480 ASN C 293 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB GLU C 30 OE1 GLU C 108 1.71 REMARK 500 O LEU B 85 O HOH B 931 2.10 REMARK 500 CG GLU C 30 OE1 GLU C 108 2.14 REMARK 500 CG1 VAL C 192 O HOH C 360 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 102 CE LYS A 102 NZ 0.152 REMARK 500 GLU C 106 CB GLU C 106 CG -0.191 REMARK 500 SER C 111 CB SER C 111 OG 0.085 REMARK 500 GLU C 283 CB GLU C 283 CG 0.170 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 4 -169.88 -101.56 REMARK 500 LYS A 37 -164.13 -128.44 REMARK 500 ASN A 38 15.41 -69.42 REMARK 500 LYS A 61 65.59 -109.46 REMARK 500 ALA A 68 -122.49 43.75 REMARK 500 PRO A 100 104.58 -50.08 REMARK 500 ALA A 104 -80.46 -105.14 REMARK 500 LEU B 4 -71.20 -89.40 REMARK 500 MET B 14 -63.45 -120.61 REMARK 500 SER B 15 -61.10 -146.14 REMARK 500 VAL B 40 70.24 -64.21 REMARK 500 LEU B 43 -2.61 79.24 REMARK 500 ALA B 80 -72.75 -100.06 REMARK 500 LEU B 85 -73.00 -78.31 REMARK 500 ASP B 146 47.70 -84.13 REMARK 500 SER B 164 -18.00 -49.92 REMARK 500 ASN C 44 -133.40 45.67 REMARK 500 CYS C 46 39.47 -155.43 REMARK 500 GLU C 108 109.41 -55.13 REMARK 500 ASN C 151 77.32 -119.00 REMARK 500 THR C 190 -158.92 -107.67 REMARK 500 LEU C 222 -9.99 78.61 REMARK 500 ASP C 241 -0.75 71.07 REMARK 500 ASN C 293 -15.02 84.99 REMARK 500 ASP C 324 51.54 -141.22 REMARK 500 ILE C 336 -65.85 -101.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BPL RELATED DB: PDB REMARK 900 RELATED ID: 3BPO RELATED DB: PDB DBREF 3BPN A 1 129 UNP P05112 IL4_HUMAN 25 153 DBREF 3BPN B 2 202 UNP P24394 IL4RA_HUMAN 27 227 DBREF 3BPN C 29 342 UNP P78552 I13R1_HUMAN 29 342 SEQADV 3BPN ALA B -2 UNP P24394 EXPRESSION TAG SEQADV 3BPN ASP B -1 UNP P24394 EXPRESSION TAG SEQADV 3BPN PRO B 0 UNP P24394 EXPRESSION TAG SEQADV 3BPN PHE B 1 UNP P24394 EXPRESSION TAG SEQADV 3BPN GLN B 28 UNP P24394 ASN 53 ENGINEERED MUTATION SEQADV 3BPN GLN B 73 UNP P24394 ASN 98 ENGINEERED MUTATION SEQADV 3BPN GLN B 109 UNP P24394 ASN 134 ENGINEERED MUTATION SEQADV 3BPN GLN B 151 UNP P24394 ASN 176 ENGINEERED MUTATION SEQRES 1 A 129 HIS LYS CYS ASP ILE THR LEU GLN GLU ILE ILE LYS THR SEQRES 2 A 129 LEU ASN SER LEU THR GLU GLN LYS THR LEU CYS THR GLU SEQRES 3 A 129 LEU THR VAL THR ASP ILE PHE ALA ALA SER LYS ASN THR SEQRES 4 A 129 THR GLU LYS GLU THR PHE CYS ARG ALA ALA THR VAL LEU SEQRES 5 A 129 ARG GLN PHE TYR SER HIS HIS GLU LYS ASP THR ARG CYS SEQRES 6 A 129 LEU GLY ALA THR ALA GLN GLN PHE HIS ARG HIS LYS GLN SEQRES 7 A 129 LEU ILE ARG PHE LEU LYS ARG LEU ASP ARG ASN LEU TRP SEQRES 8 A 129 GLY LEU ALA GLY LEU ASN SER CYS PRO VAL LYS GLU ALA SEQRES 9 A 129 ASN GLN SER THR LEU GLU ASN PHE LEU GLU ARG LEU LYS SEQRES 10 A 129 THR ILE MET ARG GLU LYS TYR SER LYS CYS SER SER SEQRES 1 B 205 ALA ASP PRO PHE LYS VAL LEU GLN GLU PRO THR CYS VAL SEQRES 2 B 205 SER ASP TYR MET SER ILE SER THR CYS GLU TRP LYS MET SEQRES 3 B 205 ASN GLY PRO THR GLN CYS SER THR GLU LEU ARG LEU LEU SEQRES 4 B 205 TYR GLN LEU VAL PHE LEU LEU SER GLU ALA HIS THR CYS SEQRES 5 B 205 ILE PRO GLU ASN ASN GLY GLY ALA GLY CYS VAL CYS HIS SEQRES 6 B 205 LEU LEU MET ASP ASP VAL VAL SER ALA ASP GLN TYR THR SEQRES 7 B 205 LEU ASP LEU TRP ALA GLY GLN GLN LEU LEU TRP LYS GLY SEQRES 8 B 205 SER PHE LYS PRO SER GLU HIS VAL LYS PRO ARG ALA PRO SEQRES 9 B 205 GLY ASN LEU THR VAL HIS THR GLN VAL SER ASP THR LEU SEQRES 10 B 205 LEU LEU THR TRP SER ASN PRO TYR PRO PRO ASP ASN TYR SEQRES 11 B 205 LEU TYR ASN HIS LEU THR TYR ALA VAL ASN ILE TRP SER SEQRES 12 B 205 GLU ASN ASP PRO ALA ASP PHE ARG ILE TYR GLN VAL THR SEQRES 13 B 205 TYR LEU GLU PRO SER LEU ARG ILE ALA ALA SER THR LEU SEQRES 14 B 205 LYS SER GLY ILE SER TYR ARG ALA ARG VAL ARG ALA TRP SEQRES 15 B 205 ALA GLN CYS TYR ASN THR THR TRP SER GLU TRP SER PRO SEQRES 16 B 205 SER THR LYS TRP HIS ASN SER TYR ARG GLU SEQRES 1 C 314 THR GLU THR GLN PRO PRO VAL THR ASN LEU SER VAL SER SEQRES 2 C 314 VAL GLU ASN LEU CYS THR VAL ILE TRP THR TRP ASN PRO SEQRES 3 C 314 PRO GLU GLY ALA SER SER ASN CYS SER LEU TRP TYR PHE SEQRES 4 C 314 SER HIS PHE GLY ASP LYS GLN ASP LYS LYS ILE ALA PRO SEQRES 5 C 314 GLU THR ARG ARG SER ILE GLU VAL PRO LEU ASN GLU ARG SEQRES 6 C 314 ILE CYS LEU GLN VAL GLY SER GLN CYS SER THR ASN GLU SEQRES 7 C 314 SER GLU LYS PRO SER ILE LEU VAL GLU LYS CYS ILE SER SEQRES 8 C 314 PRO PRO GLU GLY ASP PRO GLU SER ALA VAL THR GLU LEU SEQRES 9 C 314 GLN CYS ILE TRP HIS ASN LEU SER TYR MET LYS CYS SER SEQRES 10 C 314 TRP LEU PRO GLY ARG ASN THR SER PRO ASP THR ASN TYR SEQRES 11 C 314 THR LEU TYR TYR TRP HIS ARG SER LEU GLU LYS ILE HIS SEQRES 12 C 314 GLN CYS GLU ASN ILE PHE ARG GLU GLY GLN TYR PHE GLY SEQRES 13 C 314 CYS SER PHE ASP LEU THR LYS VAL LYS ASP SER SER PHE SEQRES 14 C 314 GLU GLN HIS SER VAL GLN ILE MET VAL LYS ASP ASN ALA SEQRES 15 C 314 GLY LYS ILE LYS PRO SER PHE ASN ILE VAL PRO LEU THR SEQRES 16 C 314 SER ARG VAL LYS PRO ASP PRO PRO HIS ILE LYS ASN LEU SEQRES 17 C 314 SER PHE HIS ASN ASP ASP LEU TYR VAL GLN TRP GLU ASN SEQRES 18 C 314 PRO GLN ASN PHE ILE SER ARG CYS LEU PHE TYR GLU VAL SEQRES 19 C 314 GLU VAL ASN ASN SER GLN THR GLU THR HIS ASN VAL PHE SEQRES 20 C 314 TYR VAL GLN GLU ALA LYS CYS GLU ASN PRO GLU PHE GLU SEQRES 21 C 314 ARG ASN VAL GLU ASN THR SER CYS PHE MET VAL PRO GLY SEQRES 22 C 314 VAL LEU PRO ASP THR LEU ASN THR VAL ARG ILE ARG VAL SEQRES 23 C 314 LYS THR ASN LYS LEU CYS TYR GLU ASP ASP LYS LEU TRP SEQRES 24 C 314 SER ASN TRP SER GLN GLU MET SER ILE GLY LYS LYS ARG SEQRES 25 C 314 ASN SER MODRES 3BPN ASN B 103 ASN GLYCOSYLATION SITE MODRES 3BPN ASN B 184 ASN GLYCOSYLATION SITE HET NAG B 901 14 HET NAG B 911 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 NAG 2(C8 H15 N O6) FORMUL 6 HOH *52(H2 O) HELIX 1 1 ASP A 4 THR A 18 1 15 HELIX 2 2 LEU A 23 GLU A 26 5 4 HELIX 3 3 THR A 40 GLU A 60 1 21 HELIX 4 4 ASP A 62 GLY A 67 1 6 HELIX 5 5 THR A 69 GLY A 95 1 27 HELIX 6 6 LEU A 109 CYS A 127 1 19 HELIX 7 7 GLN B 28 LEU B 33 1 6 HELIX 8 8 LYS B 91 HIS B 95 5 5 HELIX 9 9 SER B 164 LEU B 166 5 3 HELIX 10 10 CYS B 182 ASN B 184 5 3 HELIX 11 11 ASP C 72 GLN C 74 5 3 HELIX 12 12 ILE C 254 ARG C 256 5 3 SHEET 1 A 6 THR A 28 THR A 30 0 SHEET 2 A 6 GLN A 106 THR A 108 -1 O SER A 107 N VAL A 29 SHEET 3 A 6 LYS C 77 ALA C 79 -1 O ILE C 78 N GLN A 106 SHEET 4 A 6 TRP C 65 PHE C 70 -1 N SER C 68 O LYS C 77 SHEET 5 A 6 ILE C 94 GLN C 101 -1 O GLY C 99 N PHE C 67 SHEET 6 A 6 VAL C 114 ILE C 118 -1 O VAL C 114 N VAL C 98 SHEET 1 B 4 VAL B 3 CYS B 9 0 SHEET 2 B 4 ILE B 16 MET B 23 -1 O LYS B 22 N LEU B 4 SHEET 3 B 4 GLY B 58 LEU B 64 -1 O CYS B 61 N CYS B 19 SHEET 4 B 4 GLU B 52 ASN B 53 -1 N GLU B 52 O VAL B 60 SHEET 1 C 4 ALA B 46 HIS B 47 0 SHEET 2 C 4 ARG B 34 LEU B 39 -1 N TYR B 37 O HIS B 47 SHEET 3 C 4 TYR B 74 TRP B 79 -1 O THR B 75 N GLN B 38 SHEET 4 C 4 LEU B 84 PHE B 90 -1 O GLY B 88 N LEU B 76 SHEET 1 D 3 GLY B 102 THR B 108 0 SHEET 2 D 3 THR B 113 SER B 119 -1 O THR B 117 N THR B 105 SHEET 3 D 3 SER B 158 ALA B 162 -1 O LEU B 159 N LEU B 116 SHEET 1 E 4 PHE B 147 VAL B 152 0 SHEET 2 E 4 LEU B 132 SER B 140 -1 N ILE B 138 O ARG B 148 SHEET 3 E 4 SER B 171 ALA B 180 -1 O TRP B 179 N THR B 133 SHEET 4 E 4 THR B 194 HIS B 197 -1 O TRP B 196 N TYR B 172 SHEET 1 F 3 THR C 36 GLU C 43 0 SHEET 2 F 3 THR C 47 ASN C 53 -1 O ILE C 49 N SER C 41 SHEET 3 F 3 ARG C 83 GLU C 87 -1 O ILE C 86 N VAL C 48 SHEET 1 G 5 ASN C 175 GLU C 179 0 SHEET 2 G 5 TYR C 182 ASP C 188 -1 O GLY C 184 N PHE C 177 SHEET 3 G 5 TYR C 141 LEU C 147 -1 N TRP C 146 O PHE C 183 SHEET 4 G 5 THR C 130 HIS C 137 -1 N THR C 130 O LEU C 147 SHEET 5 G 5 VAL C 226 LYS C 227 1 O LYS C 227 N TRP C 136 SHEET 1 H 4 HIS C 171 GLN C 172 0 SHEET 2 H 4 TYR C 158 TRP C 163 -1 N TYR C 162 O HIS C 171 SHEET 3 H 4 VAL C 202 ASP C 208 -1 O MET C 205 N TYR C 161 SHEET 4 H 4 SER C 216 VAL C 220 -1 O SER C 216 N VAL C 206 SHEET 1 I 3 HIS C 232 HIS C 239 0 SHEET 2 I 3 ASP C 242 GLU C 248 -1 O GLU C 248 N HIS C 232 SHEET 3 I 3 THR C 294 VAL C 299 -1 O SER C 295 N TRP C 247 SHEET 1 J 4 ASN C 273 VAL C 277 0 SHEET 2 J 4 LEU C 258 ASN C 266 -1 N VAL C 262 O PHE C 275 SHEET 3 J 4 ASN C 308 THR C 316 -1 O THR C 309 N ASN C 265 SHEET 4 J 4 MET C 334 SER C 335 -1 O MET C 334 N VAL C 310 SSBOND 1 CYS A 3 CYS A 127 1555 1555 2.03 SSBOND 2 CYS A 24 CYS A 65 1555 1555 2.12 SSBOND 3 CYS A 46 CYS A 99 1555 1555 2.02 SSBOND 4 CYS B 9 CYS B 19 1555 1555 2.05 SSBOND 5 CYS B 29 CYS B 59 1555 1555 2.05 SSBOND 6 CYS B 49 CYS B 61 1555 1555 2.04 SSBOND 7 CYS C 62 CYS C 102 1555 1555 2.07 SSBOND 8 CYS C 95 CYS C 117 1555 1555 2.05 SSBOND 9 CYS C 134 CYS C 144 1555 1555 2.05 SSBOND 10 CYS C 173 CYS C 185 1555 1555 2.05 SSBOND 11 CYS C 257 CYS C 320 1555 1555 2.04 SSBOND 12 CYS C 282 CYS C 296 1555 1555 2.03 LINK ND2 ASN B 103 C1 NAG B 901 1555 1555 1.46 LINK ND2 ASN B 184 C1 NAG B 911 1555 1555 1.47 CRYST1 61.640 62.841 115.125 90.00 96.31 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016223 0.000000 0.001793 0.00000 SCALE2 0.000000 0.015913 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008739 0.00000