PDB Short entry for 3BPU HEADER TRANSFERASE 19-DEC-07 3BPU TITLE CRYSTAL STRUCTURE OF THE 3RD PDZ DOMAIN OF HUMAN MEMBRANE ASSOCIATED TITLE 2 GUANYLATE KINASE, C677S AND C709S DOUBLE MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEMBRANE-ASSOCIATED GUANYLATE KINASE, WW AND PDZ DOMAIN- COMPND 3 CONTAINING PROTEIN 1; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: 3RD PDZ DOMAIN: RESIDUES 640-721; COMPND 6 SYNONYM: BAI1-ASSOCIATED PROTEIN 1, BAP-1, MEMBRANE-ASSOCIATED COMPND 7 GUANYLATE KINASE INVERTED 1, MAGI-1, ATROPHIN-1-INTERACTING PROTEIN COMPND 8 3, AIP3, WW DOMAIN-CONTAINING PROTEIN 3, WWP3, TRINUCLEOTIDE REPEAT- COMPND 9 CONTAINING GENE 19 PROTEIN; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 TISSUE: BRAIN; SOURCE 6 GENE: MAGI1, BAIAP1, BAP1, TNRC19; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-R3-PRARE2; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS PDZ, MEMBRANE ASSOCIATED GUANYLATE KINASE, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, SGC, ATP-BINDING, CELL JUNCTION, NUCLEOTIDE-BINDING, KEYWDS 3 PHOSPHOPROTEIN, TIGHT JUNCTION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.S.PILKA,V.HOZJAN,C.COOPER,A.C.W.PIKE,J.ELKINS,D.A.DOYLE,F.VON AUTHOR 2 DELFT,C.H.ARROWSMITH,A.M.EDWARDS,J.WEIGELT,U.OPPERMANN,STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (SGC) REVDAT 6 30-AUG-23 3BPU 1 REMARK REVDAT 5 20-OCT-21 3BPU 1 REMARK SEQADV REVDAT 4 25-OCT-17 3BPU 1 REMARK REVDAT 3 13-JUL-11 3BPU 1 VERSN REVDAT 2 24-FEB-09 3BPU 1 VERSN REVDAT 1 08-JAN-08 3BPU 0 JRNL AUTH E.S.PILKA,V.HOZJAN,C.COOPER,A.C.W.PIKE,J.ELKINS,D.A.DOYLE, JRNL AUTH 2 F.VON DELFT,C.H.ARROWSMITH,A.M.EDWARDS,J.WEIGELT,U.OPPERMANN JRNL TITL CRYSTAL STRUCTURE OF THE 3RD PDZ DOMAIN OF HUMAN MEMBRANE JRNL TITL 2 ASSOCIATED GUANYLATE KINASE, C677S AND C709S DOUBLE MUTANT. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0066 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 10446 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 515 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 753 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2960 REMARK 3 BIN FREE R VALUE SET COUNT : 43 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 630 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 72 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.32000 REMARK 3 B22 (A**2) : -0.12000 REMARK 3 B33 (A**2) : -2.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.101 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.107 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.083 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.335 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 641 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 420 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 865 ; 1.597 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1043 ; 0.916 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 84 ; 5.983 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 25 ;45.389 ;26.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 116 ;11.723 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;10.265 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 106 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 708 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 107 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 423 ; 3.592 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 178 ; 1.084 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 680 ; 4.862 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 218 ; 6.953 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 185 ; 8.178 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 638 A 647 REMARK 3 ORIGIN FOR THE GROUP (A): -6.5428 11.8708 -18.1926 REMARK 3 T TENSOR REMARK 3 T11: 0.0749 T22: 0.1190 REMARK 3 T33: 0.0747 T12: -0.0441 REMARK 3 T13: 0.0068 T23: 0.0274 REMARK 3 L TENSOR REMARK 3 L11: 10.0599 L22: 9.0591 REMARK 3 L33: 2.4342 L12: -7.6887 REMARK 3 L13: 1.7396 L23: -1.2392 REMARK 3 S TENSOR REMARK 3 S11: 0.0477 S12: 0.5904 S13: 0.5058 REMARK 3 S21: 0.0334 S22: -0.2552 S23: -0.3474 REMARK 3 S31: -0.3868 S32: 0.1413 S33: 0.2075 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 648 A 656 REMARK 3 ORIGIN FOR THE GROUP (A): -0.7593 3.8055 -5.1144 REMARK 3 T TENSOR REMARK 3 T11: 0.0730 T22: 0.0820 REMARK 3 T33: 0.0161 T12: -0.0480 REMARK 3 T13: -0.1494 T23: 0.0168 REMARK 3 L TENSOR REMARK 3 L11: 3.6776 L22: 5.1340 REMARK 3 L33: 10.0068 L12: -4.2509 REMARK 3 L13: -2.9808 L23: 2.1520 REMARK 3 S TENSOR REMARK 3 S11: -0.4186 S12: -0.0760 S13: 0.1693 REMARK 3 S21: 0.0645 S22: 0.2330 S23: -0.2096 REMARK 3 S31: -0.4437 S32: 0.8075 S33: 0.1856 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 657 A 677 REMARK 3 ORIGIN FOR THE GROUP (A): -9.3872 12.3012 -5.6034 REMARK 3 T TENSOR REMARK 3 T11: 0.3334 T22: -0.0039 REMARK 3 T33: -0.0522 T12: -0.0330 REMARK 3 T13: -0.0750 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 7.5157 L22: 8.9124 REMARK 3 L33: 4.3218 L12: 0.5867 REMARK 3 L13: 0.1321 L23: 0.0149 REMARK 3 S TENSOR REMARK 3 S11: 0.4038 S12: 0.1469 S13: -0.0553 REMARK 3 S21: 1.4289 S22: -0.2165 S23: -0.3523 REMARK 3 S31: -0.3306 S32: 0.2911 S33: -0.1872 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 678 A 691 REMARK 3 ORIGIN FOR THE GROUP (A): -8.9273 10.1601 -13.3678 REMARK 3 T TENSOR REMARK 3 T11: 0.0330 T22: 0.1223 REMARK 3 T33: 0.0707 T12: -0.0077 REMARK 3 T13: -0.0034 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 2.7544 L22: 6.3826 REMARK 3 L33: 3.9391 L12: 0.6312 REMARK 3 L13: 0.9911 L23: 1.7093 REMARK 3 S TENSOR REMARK 3 S11: -0.0234 S12: -0.0041 S13: 0.0325 REMARK 3 S21: 0.1250 S22: 0.1256 S23: -0.4539 REMARK 3 S31: -0.1821 S32: 0.2730 S33: -0.1022 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 692 A 725 REMARK 3 ORIGIN FOR THE GROUP (A): -10.8158 5.4284 -10.8120 REMARK 3 T TENSOR REMARK 3 T11: 0.0548 T22: 0.0934 REMARK 3 T33: 0.0532 T12: -0.0047 REMARK 3 T13: -0.0039 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 1.3416 L22: 0.9555 REMARK 3 L33: 3.1776 L12: -0.2524 REMARK 3 L13: 0.0117 L23: -0.9994 REMARK 3 S TENSOR REMARK 3 S11: -0.0298 S12: 0.0582 S13: 0.0429 REMARK 3 S21: 0.0497 S22: 0.0310 S23: -0.1099 REMARK 3 S31: 0.0002 S32: 0.1200 S33: -0.0012 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3BPU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000045817. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97912 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10446 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 40.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : 0.03000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.89800 REMARK 200 R SYM FOR SHELL (I) : 0.34600 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 1UJV, 1G9O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05M ZN ACETATE PH 6.2, 30% PEG 3350, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.05650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.05650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 16.23600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 30.78900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 16.23600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 30.78900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.05650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 16.23600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 30.78900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 40.05650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 16.23600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 30.78900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 ZN ZN A 902 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 674 REMARK 465 PRO A 675 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 672 CG1 CG2 REMARK 470 SER A 677 OG REMARK 470 ARG A 678 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 681 CE NZ REMARK 470 LYS A 691 NZ REMARK 470 LYS A 711 CG CD CE NZ REMARK 470 ARG A 724 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 725 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 720 O HOH A 90 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 677 43.87 -95.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 902 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 645 ND1 REMARK 620 2 GLU A 714 OE2 116.8 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 902 DBREF 3BPU A 640 721 UNP Q96QZ7 MAGI1_HUMAN 640 721 SEQADV 3BPU SER A 638 UNP Q96QZ7 EXPRESSION TAG SEQADV 3BPU MET A 639 UNP Q96QZ7 EXPRESSION TAG SEQADV 3BPU SER A 677 UNP Q96QZ7 CYS 677 ENGINEERED MUTATION SEQADV 3BPU SER A 709 UNP Q96QZ7 CYS 709 ENGINEERED MUTATION SEQADV 3BPU GLN A 722 UNP Q96QZ7 EXPRESSION TAG SEQADV 3BPU THR A 723 UNP Q96QZ7 EXPRESSION TAG SEQADV 3BPU ARG A 724 UNP Q96QZ7 EXPRESSION TAG SEQADV 3BPU LEU A 725 UNP Q96QZ7 EXPRESSION TAG SEQRES 1 A 88 SER MET GLU LEU ILE THR VAL HIS ILE VAL LYS GLY PRO SEQRES 2 A 88 MET GLY PHE GLY PHE THR ILE ALA ASP SER PRO GLY GLY SEQRES 3 A 88 GLY GLY GLN ARG VAL LYS GLN ILE VAL ASP SER PRO ARG SEQRES 4 A 88 SER ARG GLY LEU LYS GLU GLY ASP LEU ILE VAL GLU VAL SEQRES 5 A 88 ASN LYS LYS ASN VAL GLN ALA LEU THR HIS ASN GLN VAL SEQRES 6 A 88 VAL ASP MET LEU VAL GLU SER PRO LYS GLY SER GLU VAL SEQRES 7 A 88 THR LEU LEU VAL GLN ARG GLN THR ARG LEU HET ZN A 901 1 HET ZN A 902 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) FORMUL 4 HOH *72(H2 O) HELIX 1 1 THR A 698 GLU A 708 1 11 SHEET 1 A 5 MET A 639 VAL A 647 0 SHEET 2 A 5 GLU A 714 GLN A 722 -1 O VAL A 719 N ILE A 642 SHEET 3 A 5 LEU A 685 VAL A 689 -1 N VAL A 687 O LEU A 718 SHEET 4 A 5 GLN A 666 GLN A 670 -1 N GLN A 666 O ILE A 686 SHEET 5 A 5 THR A 656 ASP A 659 -1 N ALA A 658 O ARG A 667 SHEET 1 B 4 MET A 639 VAL A 647 0 SHEET 2 B 4 GLU A 714 GLN A 722 -1 O VAL A 719 N ILE A 642 SHEET 3 B 4 LEU A 685 VAL A 689 -1 N VAL A 687 O LEU A 718 SHEET 4 B 4 LYS A 692 ASN A 693 -1 O LYS A 692 N VAL A 689 LINK ND1 HIS A 645 ZN ZN A 902 1555 1555 1.96 LINK NE2 HIS A 699 ZN ZN A 901 1555 1555 2.14 LINK OE2 GLU A 714 ZN ZN A 902 1555 1555 2.18 SITE 1 AC1 4 HOH A 73 HIS A 699 ASP A 704 GLU A 708 SITE 1 AC2 2 HIS A 645 GLU A 714 CRYST1 32.472 61.578 80.113 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030796 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016239 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012482 0.00000