PDB Short entry for 3BT9 HEADER TRANSCRIPTION 28-DEC-07 3BT9 TITLE CRYSTAL STRUCTURE OF QACR(E57Q) BOUND TO DEQUALINIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: HTH-TYPE TRANSCRIPTIONAL REGULATOR QACR; COMPND 3 CHAIN: B, D, A, E; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS MU50; SOURCE 3 ORGANISM_TAXID: 158878; SOURCE 4 STRAIN: MU50; SOURCE 5 ATCC: 700699; SOURCE 6 GENE: QACR; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PQE KEYWDS QACR, MULTIDRUG BINDING, DEQUALINIUM, BIVALENT DRUG, DNA-BINDING, KEYWDS 2 PLASMID, REPRESSOR, TRANSCRIPTION, TRANSCRIPTION REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR M.A.SHUMACHER,J.T.SCHUMAN,R.G.BRENNAN REVDAT 4 30-AUG-23 3BT9 1 REMARK REVDAT 3 20-OCT-21 3BT9 1 SOURCE REMARK SEQADV REVDAT 2 24-FEB-09 3BT9 1 VERSN REVDAT 1 12-AUG-08 3BT9 0 JRNL AUTH K.M.PETERS,J.T.SCHUMAN,R.A.SKURRAY,M.H.BROWN,R.G.BRENNAN, JRNL AUTH 2 M.A.SCHUMACHER JRNL TITL QACR-CATION RECOGNITION IS MEDIATED BY A REDUNDANCY OF JRNL TITL 2 RESIDUES CAPABLE OF CHARGE NEUTRALIZATION JRNL REF BIOCHEMISTRY V. 47 8122 2008 JRNL REFN ISSN 0006-2960 JRNL PMID 18616285 JRNL DOI 10.1021/BI8008246 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 121.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1518868.810 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 35494 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1780 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.92 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5670 REMARK 3 BIN R VALUE (WORKING SET) : 0.3530 REMARK 3 BIN FREE R VALUE : 0.3920 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 292 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.023 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6188 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 134 REMARK 3 SOLVENT ATOMS : 14 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 66.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 75.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.87000 REMARK 3 B22 (A**2) : 6.87000 REMARK 3 B33 (A**2) : -13.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM SIGMAA (A) : 0.36 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.47 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.40 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 18.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.790 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.780 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.120 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.350 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.750 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 55.39 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : DEQ_PARAM.TXT REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : DEQ_TOP.TXT REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3BT9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000045940. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-APR-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : XENTRONICS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35494 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 121.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : 0.12000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.33000 REMARK 200 R SYM FOR SHELL (I) : 0.33300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1JT6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULPHATE, PH 5.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 85.62000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 85.62000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 47.10000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 85.62000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 85.62000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 47.10000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 85.62000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 85.62000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 47.10000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 85.62000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 85.62000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 47.10000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXADECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 65680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 118450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1365.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -171.24000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -171.24000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 -171.24000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 -171.24000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E REMARK 350 BIOMT1 5 0.000000 -1.000000 0.000000 -85.62000 REMARK 350 BIOMT2 5 1.000000 0.000000 0.000000 -85.62000 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 -47.10000 REMARK 350 BIOMT1 6 0.000000 1.000000 0.000000 -85.62000 REMARK 350 BIOMT2 6 -1.000000 0.000000 0.000000 -85.62000 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 -47.10000 REMARK 350 BIOMT1 7 -1.000000 0.000000 0.000000 -85.62000 REMARK 350 BIOMT2 7 0.000000 1.000000 0.000000 -85.62000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 47.10000 REMARK 350 BIOMT1 8 1.000000 0.000000 0.000000 -85.62000 REMARK 350 BIOMT2 8 0.000000 -1.000000 0.000000 -85.62000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 47.10000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 LYS B 188 REMARK 465 MET D 1 REMARK 465 LYS D 188 REMARK 465 MET A 1 REMARK 465 LYS A 188 REMARK 465 MET E 1 REMARK 465 LYS E 188 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU E 120 O HOH E 903 2.01 REMARK 500 OE2 GLU D 101 OE2 GLU E 101 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU B 3 -102.80 -58.60 REMARK 500 LYS B 4 -78.38 -48.02 REMARK 500 ASP B 5 67.62 -64.50 REMARK 500 LYS B 6 -24.56 -164.90 REMARK 500 GLU B 33 84.16 60.76 REMARK 500 LYS B 36 19.73 -64.18 REMARK 500 ASN B 38 -13.01 -48.24 REMARK 500 TYR B 40 -33.71 -179.15 REMARK 500 LYS B 44 -88.00 -63.27 REMARK 500 LYS B 73 -76.04 -72.73 REMARK 500 THR B 89 171.60 -53.06 REMARK 500 TYR B 92 -49.00 53.70 REMARK 500 THR B 104 30.42 -86.71 REMARK 500 GLU B 105 -98.22 -164.93 REMARK 500 TYR B 106 88.09 -60.40 REMARK 500 TYR B 107 13.95 -162.94 REMARK 500 THR B 109 170.44 -59.37 REMARK 500 ILE B 112 30.38 -76.14 REMARK 500 ASN B 113 -8.14 -147.73 REMARK 500 ASN B 143 -75.88 -52.02 REMARK 500 THR B 163 16.16 -146.54 REMARK 500 HIS B 164 42.70 -74.33 REMARK 500 GLU B 165 43.79 -157.43 REMARK 500 ASN B 167 116.88 -35.50 REMARK 500 LEU D 3 -32.73 -171.48 REMARK 500 SER D 34 -146.42 -147.68 REMARK 500 LYS D 44 -64.60 68.61 REMARK 500 LYS D 71 5.10 -69.06 REMARK 500 TYR D 92 -67.18 57.76 REMARK 500 THR D 104 15.81 -68.23 REMARK 500 LYS D 108 -75.01 -76.59 REMARK 500 THR D 109 97.48 -55.76 REMARK 500 ASN D 110 -39.79 -30.71 REMARK 500 LEU D 136 0.32 -57.50 REMARK 500 GLU D 165 -64.63 -147.94 REMARK 500 GLN D 166 -156.18 -90.23 REMARK 500 SER A 34 -157.92 -105.84 REMARK 500 LYS A 44 -57.76 67.64 REMARK 500 TYR A 106 46.23 -100.16 REMARK 500 LYS A 108 37.87 -92.31 REMARK 500 SER A 111 -76.39 -76.64 REMARK 500 ILE A 112 20.51 -71.65 REMARK 500 ASN A 143 -78.54 -42.57 REMARK 500 HIS A 164 85.49 -36.42 REMARK 500 GLU A 165 71.05 153.48 REMARK 500 GLN A 166 143.60 166.99 REMARK 500 SER E 34 -168.80 -129.52 REMARK 500 TYR E 92 -65.32 51.22 REMARK 500 THR E 104 48.95 -78.51 REMARK 500 GLU E 105 -32.83 -157.72 REMARK 500 REMARK 500 THIS ENTRY HAS 59 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR B 123 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 599 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 299 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 899 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 269 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 270 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 249 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 699 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 999 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 399 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 799 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 499 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 279 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 280 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 239 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 810 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DEQ A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JT6 RELATED DB: PDB REMARK 900 WT QACR BOUND TO DEQUALINIUM REMARK 900 RELATED ID: 1JUP RELATED DB: PDB REMARK 900 WT QACR BOUND TO MALACHITE GREEN REMARK 900 RELATED ID: 1JUS RELATED DB: PDB REMARK 900 WT QACR BOUND TO R6G REMARK 900 RELATED ID: 1JTY RELATED DB: PDB REMARK 900 WT QACR BOUND TO ETHIDIUM REMARK 900 RELATED ID: 1JUM RELATED DB: PDB REMARK 900 WT QACR BOUND TO BERBERINE REMARK 900 RELATED ID: 1QVT RELATED DB: PDB REMARK 900 WT QACR BOUND TO PROFLAVINE REMARK 900 RELATED ID: 3BTC RELATED DB: PDB REMARK 900 RELATED ID: 3BTI RELATED DB: PDB DBREF 3BT9 B 1 188 UNP P0A0N3 QACR_STAAM 1 188 DBREF 3BT9 D 1 188 UNP P0A0N3 QACR_STAAM 1 188 DBREF 3BT9 A 1 188 UNP P0A0N3 QACR_STAAM 1 188 DBREF 3BT9 E 1 188 UNP P0A0N3 QACR_STAAM 1 188 SEQADV 3BT9 GLN B 57 UNP P0A0N3 GLU 57 ENGINEERED MUTATION SEQADV 3BT9 ALA B 72 UNP P0A0N3 CYS 72 ENGINEERED MUTATION SEQADV 3BT9 SER B 141 UNP P0A0N3 CYS 141 ENGINEERED MUTATION SEQADV 3BT9 GLN D 57 UNP P0A0N3 GLU 57 ENGINEERED MUTATION SEQADV 3BT9 ALA D 72 UNP P0A0N3 CYS 72 ENGINEERED MUTATION SEQADV 3BT9 SER D 141 UNP P0A0N3 CYS 141 ENGINEERED MUTATION SEQADV 3BT9 GLN A 57 UNP P0A0N3 GLU 57 ENGINEERED MUTATION SEQADV 3BT9 ALA A 72 UNP P0A0N3 CYS 72 ENGINEERED MUTATION SEQADV 3BT9 SER A 141 UNP P0A0N3 CYS 141 ENGINEERED MUTATION SEQADV 3BT9 GLN E 57 UNP P0A0N3 GLU 57 ENGINEERED MUTATION SEQADV 3BT9 ALA E 72 UNP P0A0N3 CYS 72 ENGINEERED MUTATION SEQADV 3BT9 SER E 141 UNP P0A0N3 CYS 141 ENGINEERED MUTATION SEQRES 1 B 188 MET ASN LEU LYS ASP LYS ILE LEU GLY VAL ALA LYS GLU SEQRES 2 B 188 LEU PHE ILE LYS ASN GLY TYR ASN ALA THR THR THR GLY SEQRES 3 B 188 GLU ILE VAL LYS LEU SER GLU SER SER LYS GLY ASN LEU SEQRES 4 B 188 TYR TYR HIS PHE LYS THR LYS GLU ASN LEU PHE LEU GLU SEQRES 5 B 188 ILE LEU ASN ILE GLN GLU SER LYS TRP GLN GLU GLN TRP SEQRES 6 B 188 LYS LYS GLU GLN ILE LYS ALA LYS THR ASN ARG GLU LYS SEQRES 7 B 188 PHE TYR LEU TYR ASN GLU LEU SER LEU THR THR GLU TYR SEQRES 8 B 188 TYR TYR PRO LEU GLN ASN ALA ILE ILE GLU PHE TYR THR SEQRES 9 B 188 GLU TYR TYR LYS THR ASN SER ILE ASN GLU LYS MET ASN SEQRES 10 B 188 LYS LEU GLU ASN LYS TYR ILE ASP ALA TYR HIS VAL ILE SEQRES 11 B 188 PHE LYS GLU GLY ASN LEU ASN GLY GLU TRP SER ILE ASN SEQRES 12 B 188 ASP VAL ASN ALA VAL SER LYS ILE ALA ALA ASN ALA VAL SEQRES 13 B 188 ASN GLY ILE VAL THR PHE THR HIS GLU GLN ASN ILE ASN SEQRES 14 B 188 GLU ARG ILE LYS LEU MET ASN LYS PHE SER GLN ILE PHE SEQRES 15 B 188 LEU ASN GLY LEU SER LYS SEQRES 1 D 188 MET ASN LEU LYS ASP LYS ILE LEU GLY VAL ALA LYS GLU SEQRES 2 D 188 LEU PHE ILE LYS ASN GLY TYR ASN ALA THR THR THR GLY SEQRES 3 D 188 GLU ILE VAL LYS LEU SER GLU SER SER LYS GLY ASN LEU SEQRES 4 D 188 TYR TYR HIS PHE LYS THR LYS GLU ASN LEU PHE LEU GLU SEQRES 5 D 188 ILE LEU ASN ILE GLN GLU SER LYS TRP GLN GLU GLN TRP SEQRES 6 D 188 LYS LYS GLU GLN ILE LYS ALA LYS THR ASN ARG GLU LYS SEQRES 7 D 188 PHE TYR LEU TYR ASN GLU LEU SER LEU THR THR GLU TYR SEQRES 8 D 188 TYR TYR PRO LEU GLN ASN ALA ILE ILE GLU PHE TYR THR SEQRES 9 D 188 GLU TYR TYR LYS THR ASN SER ILE ASN GLU LYS MET ASN SEQRES 10 D 188 LYS LEU GLU ASN LYS TYR ILE ASP ALA TYR HIS VAL ILE SEQRES 11 D 188 PHE LYS GLU GLY ASN LEU ASN GLY GLU TRP SER ILE ASN SEQRES 12 D 188 ASP VAL ASN ALA VAL SER LYS ILE ALA ALA ASN ALA VAL SEQRES 13 D 188 ASN GLY ILE VAL THR PHE THR HIS GLU GLN ASN ILE ASN SEQRES 14 D 188 GLU ARG ILE LYS LEU MET ASN LYS PHE SER GLN ILE PHE SEQRES 15 D 188 LEU ASN GLY LEU SER LYS SEQRES 1 A 188 MET ASN LEU LYS ASP LYS ILE LEU GLY VAL ALA LYS GLU SEQRES 2 A 188 LEU PHE ILE LYS ASN GLY TYR ASN ALA THR THR THR GLY SEQRES 3 A 188 GLU ILE VAL LYS LEU SER GLU SER SER LYS GLY ASN LEU SEQRES 4 A 188 TYR TYR HIS PHE LYS THR LYS GLU ASN LEU PHE LEU GLU SEQRES 5 A 188 ILE LEU ASN ILE GLN GLU SER LYS TRP GLN GLU GLN TRP SEQRES 6 A 188 LYS LYS GLU GLN ILE LYS ALA LYS THR ASN ARG GLU LYS SEQRES 7 A 188 PHE TYR LEU TYR ASN GLU LEU SER LEU THR THR GLU TYR SEQRES 8 A 188 TYR TYR PRO LEU GLN ASN ALA ILE ILE GLU PHE TYR THR SEQRES 9 A 188 GLU TYR TYR LYS THR ASN SER ILE ASN GLU LYS MET ASN SEQRES 10 A 188 LYS LEU GLU ASN LYS TYR ILE ASP ALA TYR HIS VAL ILE SEQRES 11 A 188 PHE LYS GLU GLY ASN LEU ASN GLY GLU TRP SER ILE ASN SEQRES 12 A 188 ASP VAL ASN ALA VAL SER LYS ILE ALA ALA ASN ALA VAL SEQRES 13 A 188 ASN GLY ILE VAL THR PHE THR HIS GLU GLN ASN ILE ASN SEQRES 14 A 188 GLU ARG ILE LYS LEU MET ASN LYS PHE SER GLN ILE PHE SEQRES 15 A 188 LEU ASN GLY LEU SER LYS SEQRES 1 E 188 MET ASN LEU LYS ASP LYS ILE LEU GLY VAL ALA LYS GLU SEQRES 2 E 188 LEU PHE ILE LYS ASN GLY TYR ASN ALA THR THR THR GLY SEQRES 3 E 188 GLU ILE VAL LYS LEU SER GLU SER SER LYS GLY ASN LEU SEQRES 4 E 188 TYR TYR HIS PHE LYS THR LYS GLU ASN LEU PHE LEU GLU SEQRES 5 E 188 ILE LEU ASN ILE GLN GLU SER LYS TRP GLN GLU GLN TRP SEQRES 6 E 188 LYS LYS GLU GLN ILE LYS ALA LYS THR ASN ARG GLU LYS SEQRES 7 E 188 PHE TYR LEU TYR ASN GLU LEU SER LEU THR THR GLU TYR SEQRES 8 E 188 TYR TYR PRO LEU GLN ASN ALA ILE ILE GLU PHE TYR THR SEQRES 9 E 188 GLU TYR TYR LYS THR ASN SER ILE ASN GLU LYS MET ASN SEQRES 10 E 188 LYS LEU GLU ASN LYS TYR ILE ASP ALA TYR HIS VAL ILE SEQRES 11 E 188 PHE LYS GLU GLY ASN LEU ASN GLY GLU TRP SER ILE ASN SEQRES 12 E 188 ASP VAL ASN ALA VAL SER LYS ILE ALA ALA ASN ALA VAL SEQRES 13 E 188 ASN GLY ILE VAL THR PHE THR HIS GLU GLN ASN ILE ASN SEQRES 14 E 188 GLU ARG ILE LYS LEU MET ASN LYS PHE SER GLN ILE PHE SEQRES 15 E 188 LEU ASN GLY LEU SER LYS HET SO4 B 499 5 HET SO4 D 899 5 HET SO4 D 269 5 HET SO4 D 270 5 HET SO4 D 999 5 HET SO4 D 280 5 HET SO4 A 599 5 HET SO4 A 299 5 HET SO4 A 699 5 HET SO4 A 800 5 HET SO4 A 801 5 HET SO4 A 279 5 HET SO4 A 601 5 HET SO4 A 602 5 HET SO4 A 810 5 HET DEQ A 201 34 HET SO4 E 900 5 HET SO4 E 249 5 HET SO4 E 399 5 HET SO4 E 799 5 HET SO4 E 239 5 HETNAM SO4 SULFATE ION HETNAM DEQ DEQUALINIUM HETSYN DEQ DEQUADIN FORMUL 5 SO4 20(O4 S 2-) FORMUL 20 DEQ C30 H40 N4 2+ FORMUL 26 HOH *14(H2 O) HELIX 1 1 LYS B 6 ASN B 18 1 13 HELIX 2 2 THR B 24 GLU B 33 1 10 HELIX 3 3 THR B 45 GLN B 69 1 25 HELIX 4 4 ILE B 70 ALA B 72 5 3 HELIX 5 5 THR B 74 THR B 89 1 16 HELIX 6 6 TYR B 92 PRO B 94 5 3 HELIX 7 7 LEU B 95 THR B 104 1 10 HELIX 8 8 LYS B 115 ASN B 137 1 23 HELIX 9 9 ASP B 144 PHE B 162 1 19 HELIX 10 10 ASN B 167 SER B 187 1 21 HELIX 11 11 LEU D 3 THR D 23 1 21 HELIX 12 12 THR D 24 SER D 32 1 9 HELIX 13 13 SER D 35 LYS D 44 1 10 HELIX 14 14 THR D 45 GLN D 69 1 25 HELIX 15 15 ILE D 70 ALA D 72 5 3 HELIX 16 16 THR D 74 THR D 89 1 16 HELIX 17 17 TYR D 92 PRO D 94 5 3 HELIX 18 18 LEU D 95 PHE D 102 1 8 HELIX 19 19 PHE D 102 TYR D 107 1 6 HELIX 20 20 THR D 109 LEU D 136 1 28 HELIX 21 21 ASP D 144 PHE D 162 1 19 HELIX 22 22 ASN D 167 ASN D 184 1 18 HELIX 23 23 ASN A 2 THR A 23 1 22 HELIX 24 24 THR A 24 GLU A 33 1 10 HELIX 25 25 SER A 35 LYS A 44 1 10 HELIX 26 26 THR A 45 GLN A 69 1 25 HELIX 27 27 ILE A 70 ALA A 72 5 3 HELIX 28 28 THR A 74 TYR A 92 1 19 HELIX 29 29 LEU A 95 TYR A 106 1 12 HELIX 30 30 LYS A 115 ASN A 137 1 23 HELIX 31 31 ASP A 144 HIS A 164 1 21 HELIX 32 32 ASN A 167 ASN A 184 1 18 HELIX 33 33 ASN E 2 GLY E 19 1 18 HELIX 34 34 THR E 24 SER E 32 1 9 HELIX 35 35 SER E 35 PHE E 43 1 9 HELIX 36 36 THR E 45 ILE E 70 1 26 HELIX 37 37 THR E 74 THR E 89 1 16 HELIX 38 38 TYR E 92 PRO E 94 5 3 HELIX 39 39 LEU E 95 TYR E 107 1 13 HELIX 40 40 THR E 109 LEU E 136 1 28 HELIX 41 41 ASP E 144 PHE E 162 1 19 HELIX 42 42 ASN E 167 GLY E 185 1 19 SITE 1 AC1 3 ASN A 2 ASP A 5 LYS A 6 SITE 1 AC2 3 LYS A 4 TYR A 41 HIS A 42 SITE 1 AC3 4 THR D 23 THR D 24 THR D 25 LYS D 46 SITE 1 AC4 4 LYS E 36 TYR E 40 THR E 45 LYS E 46 SITE 1 AC5 2 LYS B 66 ASN D 38 SITE 1 AC6 2 LYS D 17 GLU D 27 SITE 1 AC7 5 TYR E 20 THR E 45 LYS E 46 GLU E 47 SITE 2 AC7 5 TYR E 106 SITE 1 AC8 3 SER A 35 LYS A 36 LYS E 60 SITE 1 AC9 4 TYR D 20 LYS D 46 GLU D 105 TYR D 106 SITE 1 BC1 5 LYS E 12 ILE E 53 ILE E 56 GLN E 57 SITE 2 BC1 5 LYS E 60 SITE 1 BC2 4 TYR A 40 ASN E 2 ASP E 5 LYS E 6 SITE 1 BC3 4 THR A 23 THR A 24 THR A 25 LYS A 46 SITE 1 BC4 3 LYS B 67 LYS D 60 TYR D 91 SITE 1 BC5 2 HIS A 128 LYS A 132 SITE 1 BC6 5 ASN A 2 LEU A 3 LYS A 4 ASN A 38 SITE 2 BC6 5 HIS A 42 SITE 1 BC7 4 LYS B 73 HIS D 164 GLU D 165 TYR E 107 SITE 1 BC8 2 HIS E 128 LYS E 132 SITE 1 BC9 4 TYR A 80 GLN A 180 ASN A 184 ILE E 70 SITE 1 CC1 3 THR A 24 GLY A 26 GLU A 27 SITE 1 CC2 11 GLN A 57 GLU A 58 TRP A 61 THR A 89 SITE 2 CC2 11 TYR A 93 TYR A 103 TYR A 107 GLU A 120 SITE 3 CC2 11 ASN B 97 THR B 161 PHE B 162 CRYST1 171.240 171.240 94.200 90.00 90.00 90.00 P 42 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005840 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005840 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010616 0.00000