PDB Short entry for 3C5N HEADER SIGNALING PROTEIN 31-JAN-08 3C5N TITLE STRUCTURE OF HUMAN TULP1 IN COMPLEX WITH IP3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUBBY-RELATED PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 291-536; COMPND 5 SYNONYM: TUBBY-LIKE PROTEIN 1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TULP1, TUBL1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TUBBY, INOSITOL, SIGNALLING, ALTERNATIVE SPLICING, DISEASE MUTATION, KEYWDS 2 POLYMORPHISM, RETINITIS PIGMENTOSA, SENSORY TRANSDUCTION, VISION, KEYWDS 3 SIGNALING PROTEIN, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 4 CONSORTIUM, SGC EXPDTA X-RAY DIFFRACTION AUTHOR R.D.BUSAM,L.LEHTIO,C.H.ARROWSMITH,R.COLLINS,L.G.DAHLGREN,A.M.EDWARDS, AUTHOR 2 S.FLODIN,A.FLORES,S.GRASLUND,M.HAMMARSTROM,B.M.HALLBERG,M.D.HERMAN, AUTHOR 3 A.JOHANSSON,I.JOHANSSON,A.KALLAS,T.KARLBERG,T.KOTENYOVA,M.MOCHE, AUTHOR 4 M.E.NILSSON,P.NORDLUND,T.NYMAN,C.PERSSON,J.SAGEMARK,L.SVENSSON, AUTHOR 5 A.G.THORSELL,L.TRESAUGUES,S.VAN DEN BERG,J.WEIGELT,M.WELIN, AUTHOR 6 H.BERGLUND,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 4 21-FEB-24 3C5N 1 REMARK REVDAT 3 25-OCT-17 3C5N 1 REMARK REVDAT 2 24-FEB-09 3C5N 1 VERSN REVDAT 1 01-APR-08 3C5N 0 JRNL AUTH R.D.BUSAM,L.LEHTIO,C.H.ARROWSMITH,R.COLLINS,L.G.DAHLGREN, JRNL AUTH 2 A.M.EDWARDS,S.FLODIN,A.FLORES,S.GRASLUND,M.HAMMARSTROM, JRNL AUTH 3 B.M.HALLBERG,M.D.HERMAN,A.JOHANSSON,I.JOHANSSON,A.KALLAS, JRNL AUTH 4 T.KARLBERG,T.KOTENYOVA,M.MOCHE,M.E.NILSSON,P.NORDLUND, JRNL AUTH 5 T.NYMAN,C.PERSSON,J.SAGEMARK,L.SVENSSON,A.G.THORSELL, JRNL AUTH 6 L.TRESAUGUES,S.VAN DEN BERG,J.WEIGELT,M.WELIN,H.BERGLUND, JRNL AUTH 7 STRUCTURAL GENOMICS CONSORTIUM (SGC) JRNL TITL STRUCTURE OF HUMAN TULP1 IN COMPLEX WITH IP3 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 48245 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1952 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.7040 - 4.3300 0.91 3146 134 0.1920 0.1930 REMARK 3 2 4.3300 - 3.4400 0.94 3191 169 0.1690 0.1920 REMARK 3 3 3.4400 - 3.0060 0.97 3285 126 0.1780 0.2110 REMARK 3 4 3.0060 - 2.7320 0.97 3305 130 0.1880 0.2080 REMARK 3 5 2.7320 - 2.5360 0.97 3307 130 0.1780 0.2260 REMARK 3 6 2.5360 - 2.3870 0.98 3319 140 0.1810 0.2570 REMARK 3 7 2.3870 - 2.2670 0.98 3298 169 0.1750 0.2190 REMARK 3 8 2.2670 - 2.1690 0.99 3338 141 0.1710 0.2320 REMARK 3 9 2.1690 - 2.0860 0.99 3290 171 0.1790 0.2170 REMARK 3 10 2.0860 - 2.0130 0.99 3387 128 0.1910 0.2580 REMARK 3 11 2.0130 - 1.9510 0.99 3325 129 0.1850 0.2520 REMARK 3 12 1.9510 - 1.8950 0.99 3377 121 0.2090 0.2470 REMARK 3 13 1.8950 - 1.8450 0.99 3333 139 0.2210 0.2500 REMARK 3 14 1.8450 - 1.8000 1.00 3392 125 0.2330 0.2820 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.09800 REMARK 3 B22 (A**2) : 0.12400 REMARK 3 B33 (A**2) : -0.22200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.21500 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 7484 REMARK 3 ANGLE : 1.029 13471 REMARK 3 CHIRALITY : 0.089 587 REMARK 3 PLANARITY : 0.006 1129 REMARK 3 DIHEDRAL : 16.171 1939 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): 87.9905 -5.0041 31.2609 REMARK 3 T TENSOR REMARK 3 T11: 0.1096 T22: 0.1184 REMARK 3 T33: 0.0892 T12: 0.0332 REMARK 3 T13: 0.0149 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 0.8400 L22: 2.1964 REMARK 3 L33: 4.1346 L12: 0.3336 REMARK 3 L13: 0.8999 L23: -0.6768 REMARK 3 S TENSOR REMARK 3 S11: 0.0419 S12: -0.1866 S13: -0.0057 REMARK 3 S21: 0.4314 S22: 0.0553 S23: 0.0493 REMARK 3 S31: 0.3434 S32: -0.1468 S33: -0.0816 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): 78.8174 -19.2795 22.1853 REMARK 3 T TENSOR REMARK 3 T11: 0.2426 T22: 0.1556 REMARK 3 T33: 0.1935 T12: -0.0888 REMARK 3 T13: -0.0033 T23: 0.0737 REMARK 3 L TENSOR REMARK 3 L11: 0.0845 L22: 0.9420 REMARK 3 L33: 0.1162 L12: 0.0427 REMARK 3 L13: -0.2061 L23: -0.6248 REMARK 3 S TENSOR REMARK 3 S11: -0.0331 S12: -0.0238 S13: -0.0357 REMARK 3 S21: -0.1181 S22: 0.0069 S23: 0.2125 REMARK 3 S31: 0.0752 S32: -0.0805 S33: -0.0573 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): 85.8088 -1.8603 15.7493 REMARK 3 T TENSOR REMARK 3 T11: 0.1035 T22: 0.1661 REMARK 3 T33: 0.1500 T12: 0.0200 REMARK 3 T13: 0.0016 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 2.2841 L22: 2.0256 REMARK 3 L33: 2.6298 L12: -0.3508 REMARK 3 L13: 0.2648 L23: -0.3863 REMARK 3 S TENSOR REMARK 3 S11: 0.1286 S12: -0.2543 S13: 0.1869 REMARK 3 S21: -0.3113 S22: -0.0276 S23: 0.0341 REMARK 3 S31: 0.0902 S32: -0.1748 S33: -0.0941 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): 80.9949 -13.3743 10.7463 REMARK 3 T TENSOR REMARK 3 T11: 0.5995 T22: 0.2167 REMARK 3 T33: 0.1898 T12: -0.0985 REMARK 3 T13: -0.1138 T23: -0.0254 REMARK 3 L TENSOR REMARK 3 L11: 1.0306 L22: 1.6871 REMARK 3 L33: 2.5189 L12: -0.7868 REMARK 3 L13: 0.7165 L23: -0.2397 REMARK 3 S TENSOR REMARK 3 S11: 0.1266 S12: 0.1757 S13: -0.2045 REMARK 3 S21: -1.3512 S22: 0.2301 S23: 0.4726 REMARK 3 S31: 0.8486 S32: 0.0786 S33: -0.4113 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): 92.0278 11.4851 17.2320 REMARK 3 T TENSOR REMARK 3 T11: 0.1713 T22: 0.1613 REMARK 3 T33: 0.1958 T12: -0.0070 REMARK 3 T13: 0.0256 T23: 0.0175 REMARK 3 L TENSOR REMARK 3 L11: 0.6857 L22: 0.5229 REMARK 3 L33: 1.4990 L12: -0.5033 REMARK 3 L13: -0.6705 L23: -0.9817 REMARK 3 S TENSOR REMARK 3 S11: 0.1454 S12: 0.1038 S13: 0.0701 REMARK 3 S21: 0.0753 S22: 0.1420 S23: -0.1131 REMARK 3 S31: -0.2256 S32: 0.0414 S33: -0.2085 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): 88.9938 4.5500 23.6205 REMARK 3 T TENSOR REMARK 3 T11: 0.0973 T22: 0.1328 REMARK 3 T33: 0.1366 T12: 0.0320 REMARK 3 T13: 0.0089 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.0558 L22: 1.4053 REMARK 3 L33: 2.0191 L12: 0.1278 REMARK 3 L13: -0.0086 L23: 0.2093 REMARK 3 S TENSOR REMARK 3 S11: 0.0410 S12: -0.0141 S13: 0.0491 REMARK 3 S21: 0.1097 S22: 0.0716 S23: -0.0389 REMARK 3 S31: -0.0744 S32: -0.0868 S33: -0.0959 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): 52.5289 21.0415 3.7847 REMARK 3 T TENSOR REMARK 3 T11: 0.1047 T22: 0.1809 REMARK 3 T33: 0.1764 T12: -0.0217 REMARK 3 T13: -0.0419 T23: 0.0157 REMARK 3 L TENSOR REMARK 3 L11: 1.9305 L22: 2.5972 REMARK 3 L33: 1.4785 L12: 1.3158 REMARK 3 L13: -0.8664 L23: 0.1825 REMARK 3 S TENSOR REMARK 3 S11: 0.0473 S12: 0.2081 S13: 0.0793 REMARK 3 S21: -0.0196 S22: 0.0290 S23: 0.4825 REMARK 3 S31: 0.0838 S32: -0.3776 S33: -0.0348 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): 54.3132 9.7552 7.8973 REMARK 3 T TENSOR REMARK 3 T11: 0.1497 T22: 0.1369 REMARK 3 T33: 0.2721 T12: -0.0429 REMARK 3 T13: 0.0224 T23: 0.0292 REMARK 3 L TENSOR REMARK 3 L11: 2.0603 L22: 0.7707 REMARK 3 L33: 1.3488 L12: 1.4669 REMARK 3 L13: -0.7686 L23: 1.2218 REMARK 3 S TENSOR REMARK 3 S11: -0.1361 S12: -0.0481 S13: -0.6344 REMARK 3 S21: 0.2140 S22: -0.0416 S23: 0.3061 REMARK 3 S31: 0.2941 S32: -0.1468 S33: 0.1568 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): 68.5066 8.5027 1.5081 REMARK 3 T TENSOR REMARK 3 T11: 0.1200 T22: 0.1366 REMARK 3 T33: 0.2548 T12: -0.0191 REMARK 3 T13: 0.0046 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: -0.3052 L22: 1.0003 REMARK 3 L33: 1.3532 L12: -0.2519 REMARK 3 L13: -0.1071 L23: 0.1993 REMARK 3 S TENSOR REMARK 3 S11: -0.0375 S12: 0.0800 S13: -0.1523 REMARK 3 S21: -0.0748 S22: 0.0428 S23: -0.3920 REMARK 3 S31: 0.0556 S32: 0.1476 S33: -0.0012 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): 67.2381 14.7670 -6.1132 REMARK 3 T TENSOR REMARK 3 T11: 0.2387 T22: 0.1665 REMARK 3 T33: 0.1940 T12: -0.0807 REMARK 3 T13: 0.0601 T23: -0.0349 REMARK 3 L TENSOR REMARK 3 L11: 1.7760 L22: 2.3958 REMARK 3 L33: 1.1239 L12: 0.2516 REMARK 3 L13: -0.6139 L23: 0.3901 REMARK 3 S TENSOR REMARK 3 S11: -0.2825 S12: 0.3132 S13: -0.2969 REMARK 3 S21: -0.4696 S22: 0.1720 S23: -0.2901 REMARK 3 S31: 0.0688 S32: 0.0292 S33: 0.1040 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): 72.2044 20.3157 -1.2136 REMARK 3 T TENSOR REMARK 3 T11: 0.1189 T22: 0.1846 REMARK 3 T33: 0.2388 T12: -0.0283 REMARK 3 T13: 0.0753 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 1.5761 L22: 1.3920 REMARK 3 L33: 1.4557 L12: 1.0176 REMARK 3 L13: -0.5759 L23: -1.1197 REMARK 3 S TENSOR REMARK 3 S11: -0.2169 S12: 0.1478 S13: -0.1464 REMARK 3 S21: -0.2702 S22: 0.0558 S23: -0.5597 REMARK 3 S31: -0.0017 S32: 0.2572 S33: 0.0070 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): 62.8497 25.0407 5.1775 REMARK 3 T TENSOR REMARK 3 T11: 0.1116 T22: 0.1353 REMARK 3 T33: 0.1062 T12: -0.0245 REMARK 3 T13: -0.0116 T23: 0.0113 REMARK 3 L TENSOR REMARK 3 L11: 1.5186 L22: 2.4334 REMARK 3 L33: -0.2406 L12: 0.2577 REMARK 3 L13: -0.3199 L23: 0.3655 REMARK 3 S TENSOR REMARK 3 S11: -0.0089 S12: -0.0108 S13: 0.0122 REMARK 3 S21: 0.0737 S22: -0.0149 S23: -0.0469 REMARK 3 S31: 0.0328 S32: 0.0221 S33: 0.0105 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3C5N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-FEB-08. REMARK 100 THE DEPOSITION ID IS D_1000046371. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97874 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : SI111 REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48246 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.05380 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.480 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: FOURIER SYNTHESIS FROM 2FIM REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, 10 MM MYO-INOSITOL 1,4,5 REMARK 280 TRISPHOSPHATE, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.81500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 261 REMARK 465 GLY A 262 REMARK 465 MET A 263 REMARK 465 ASP A 264 REMARK 465 ARG A 265 REMARK 465 GLY A 266 REMARK 465 LEU A 306 REMARK 465 SER A 307 REMARK 465 ARG A 308 REMARK 465 GLY A 309 REMARK 465 GLY A 310 REMARK 465 GLU A 311 REMARK 465 GLY A 361 REMARK 465 PHE A 362 REMARK 465 ARG A 363 REMARK 465 LYS B 261 REMARK 465 GLY B 262 REMARK 465 MET B 263 REMARK 465 ASP B 264 REMARK 465 ARG B 265 REMARK 465 GLY B 266 REMARK 465 MET B 267 REMARK 465 ASN B 305 REMARK 465 LEU B 306 REMARK 465 SER B 307 REMARK 465 ARG B 308 REMARK 465 GLY B 309 REMARK 465 GLY B 310 REMARK 465 GLU B 311 REMARK 465 TRP B 415 REMARK 465 ASN B 416 REMARK 465 ASP B 417 REMARK 465 ASP B 418 REMARK 465 SER B 419 REMARK 465 GLY B 420 REMARK 465 SER B 421 REMARK 465 TYR B 422 REMARK 465 THR B 423 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 291 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 360 CB CG CD1 CD2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 280 CG CD CE NZ REMARK 480 LYS B 279 N CA C O CB CG CD REMARK 480 LYS B 279 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 555 O HOH B 621 2.16 REMARK 500 O HOH B 607 O HOH B 621 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 268 59.39 -141.27 REMARK 500 ASP A 276 48.76 -89.94 REMARK 500 LYS A 280 79.83 -62.72 REMARK 500 ARG A 291 35.78 -94.35 REMARK 500 ASP A 330 -163.04 -75.46 REMARK 500 ASP B 276 34.89 -93.11 REMARK 500 THR B 277 -165.37 -107.32 REMARK 500 ASP B 330 -159.76 -79.94 REMARK 500 ASN B 388 178.59 172.98 REMARK 500 ALA B 389 5.72 -63.31 REMARK 500 THR B 401 72.59 -115.73 REMARK 500 PRO B 413 125.80 -32.51 REMARK 500 ASP B 445 87.29 -152.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE I3P B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE I3P A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE I3P B 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2FIM RELATED DB: PDB DBREF 3C5N A 238 483 UNP O00294 TULP1_HUMAN 291 536 DBREF 3C5N B 238 483 UNP O00294 TULP1_HUMAN 291 536 SEQRES 1 A 246 PRO ARG GLU PHE VAL LEU ARG PRO ALA PRO GLN GLY ARG SEQRES 2 A 246 THR VAL ARG CYS ARG LEU THR ARG ASP LYS LYS GLY MET SEQRES 3 A 246 ASP ARG GLY MET TYR PRO SER TYR PHE LEU HIS LEU ASP SEQRES 4 A 246 THR GLU LYS LYS VAL PHE LEU LEU ALA GLY ARG LYS ARG SEQRES 5 A 246 LYS ARG SER LYS THR ALA ASN TYR LEU ILE SER ILE ASP SEQRES 6 A 246 PRO THR ASN LEU SER ARG GLY GLY GLU ASN PHE ILE GLY SEQRES 7 A 246 LYS LEU ARG SER ASN LEU LEU GLY ASN ARG PHE THR VAL SEQRES 8 A 246 PHE ASP ASN GLY GLN ASN PRO GLN ARG GLY TYR SER THR SEQRES 9 A 246 ASN VAL ALA SER LEU ARG GLN GLU LEU ALA ALA VAL ILE SEQRES 10 A 246 TYR GLU THR ASN VAL LEU GLY PHE ARG GLY PRO ARG ARG SEQRES 11 A 246 MET THR VAL ILE ILE PRO GLY MET SER ALA GLU ASN GLU SEQRES 12 A 246 ARG VAL PRO ILE ARG PRO ARG ASN ALA SER ASP GLY LEU SEQRES 13 A 246 LEU VAL ARG TRP GLN ASN LYS THR LEU GLU SER LEU ILE SEQRES 14 A 246 GLU LEU HIS ASN LYS PRO PRO VAL TRP ASN ASP ASP SER SEQRES 15 A 246 GLY SER TYR THR LEU ASN PHE GLN GLY ARG VAL THR GLN SEQRES 16 A 246 ALA SER VAL LYS ASN PHE GLN ILE VAL HIS ALA ASP ASP SEQRES 17 A 246 PRO ASP TYR ILE VAL LEU GLN PHE GLY ARG VAL ALA GLU SEQRES 18 A 246 ASP ALA PHE THR LEU ASP TYR ARG TYR PRO LEU CYS ALA SEQRES 19 A 246 LEU GLN ALA PHE ALA ILE ALA LEU SER SER PHE ASP SEQRES 1 B 246 PRO ARG GLU PHE VAL LEU ARG PRO ALA PRO GLN GLY ARG SEQRES 2 B 246 THR VAL ARG CYS ARG LEU THR ARG ASP LYS LYS GLY MET SEQRES 3 B 246 ASP ARG GLY MET TYR PRO SER TYR PHE LEU HIS LEU ASP SEQRES 4 B 246 THR GLU LYS LYS VAL PHE LEU LEU ALA GLY ARG LYS ARG SEQRES 5 B 246 LYS ARG SER LYS THR ALA ASN TYR LEU ILE SER ILE ASP SEQRES 6 B 246 PRO THR ASN LEU SER ARG GLY GLY GLU ASN PHE ILE GLY SEQRES 7 B 246 LYS LEU ARG SER ASN LEU LEU GLY ASN ARG PHE THR VAL SEQRES 8 B 246 PHE ASP ASN GLY GLN ASN PRO GLN ARG GLY TYR SER THR SEQRES 9 B 246 ASN VAL ALA SER LEU ARG GLN GLU LEU ALA ALA VAL ILE SEQRES 10 B 246 TYR GLU THR ASN VAL LEU GLY PHE ARG GLY PRO ARG ARG SEQRES 11 B 246 MET THR VAL ILE ILE PRO GLY MET SER ALA GLU ASN GLU SEQRES 12 B 246 ARG VAL PRO ILE ARG PRO ARG ASN ALA SER ASP GLY LEU SEQRES 13 B 246 LEU VAL ARG TRP GLN ASN LYS THR LEU GLU SER LEU ILE SEQRES 14 B 246 GLU LEU HIS ASN LYS PRO PRO VAL TRP ASN ASP ASP SER SEQRES 15 B 246 GLY SER TYR THR LEU ASN PHE GLN GLY ARG VAL THR GLN SEQRES 16 B 246 ALA SER VAL LYS ASN PHE GLN ILE VAL HIS ALA ASP ASP SEQRES 17 B 246 PRO ASP TYR ILE VAL LEU GLN PHE GLY ARG VAL ALA GLU SEQRES 18 B 246 ASP ALA PHE THR LEU ASP TYR ARG TYR PRO LEU CYS ALA SEQRES 19 B 246 LEU GLN ALA PHE ALA ILE ALA LEU SER SER PHE ASP HET I3P A 2 24 HET I3P B 1 24 HET I3P B 3 24 HETNAM I3P D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE FORMUL 3 I3P 3(C6 H15 O15 P3) FORMUL 6 HOH *246(H2 O) HELIX 1 1 GLU A 240 ARG A 244 5 5 HELIX 2 2 ASN A 334 GLY A 338 5 5 HELIX 3 3 ASN A 342 LEU A 346 5 5 HELIX 4 4 GLY A 392 LYS A 400 1 9 HELIX 5 5 CYS A 470 SER A 481 1 12 HELIX 6 6 GLU B 240 ARG B 244 5 5 HELIX 7 7 ASN B 334 GLY B 338 5 5 HELIX 8 8 ASN B 342 LEU B 346 5 5 HELIX 9 9 GLY B 392 LYS B 400 1 9 HELIX 10 10 CYS B 470 SER B 480 1 11 SHEET 1 A13 THR A 251 ARG A 258 0 SHEET 2 A13 SER A 270 LEU A 275 -1 O PHE A 272 N THR A 257 SHEET 3 A13 PHE A 282 LYS A 288 -1 O LEU A 284 N LEU A 273 SHEET 4 A13 ASN A 296 SER A 300 -1 O SER A 300 N ALA A 285 SHEET 5 A13 PHE A 313 SER A 319 -1 O LEU A 317 N TYR A 297 SHEET 6 A13 ARG A 325 PHE A 329 -1 O THR A 327 N ARG A 318 SHEET 7 A13 GLU A 349 TYR A 355 -1 O ALA A 351 N VAL A 328 SHEET 8 A13 MET A 368 PRO A 373 -1 O THR A 369 N ILE A 354 SHEET 9 A13 LEU A 405 ASN A 410 -1 O ILE A 406 N ILE A 372 SHEET 10 A13 PHE A 438 VAL A 441 -1 O VAL A 441 N HIS A 409 SHEET 11 A13 LEU A 451 ALA A 457 -1 O LEU A 451 N ILE A 440 SHEET 12 A13 ALA A 460 ARG A 466 -1 O THR A 462 N GLY A 454 SHEET 13 A13 THR A 251 ARG A 258 -1 N VAL A 252 O TYR A 465 SHEET 1 B 2 VAL A 414 ASN A 416 0 SHEET 2 B 2 SER A 421 THR A 423 -1 O SER A 421 N ASN A 416 SHEET 1 C13 VAL B 252 ASP B 259 0 SHEET 2 C13 SER B 270 LEU B 275 -1 O SER B 270 N ASP B 259 SHEET 3 C13 PHE B 282 LYS B 288 -1 O LEU B 284 N LEU B 273 SHEET 4 C13 ASN B 296 SER B 300 -1 O SER B 300 N ALA B 285 SHEET 5 C13 PHE B 313 SER B 319 -1 O ILE B 314 N ILE B 299 SHEET 6 C13 ARG B 325 ASP B 330 -1 O THR B 327 N ARG B 318 SHEET 7 C13 GLU B 349 THR B 357 -1 O LEU B 350 N VAL B 328 SHEET 8 C13 ARG B 366 PRO B 373 -1 O THR B 369 N ILE B 354 SHEET 9 C13 LEU B 405 ASN B 410 -1 O LEU B 408 N VAL B 370 SHEET 10 C13 PHE B 438 VAL B 441 -1 O VAL B 441 N HIS B 409 SHEET 11 C13 LEU B 451 ALA B 457 -1 O LEU B 451 N ILE B 440 SHEET 12 C13 ALA B 460 TYR B 465 -1 O ALA B 460 N VAL B 456 SHEET 13 C13 VAL B 252 ASP B 259 -1 N VAL B 252 O TYR B 465 CISPEP 1 TYR A 467 PRO A 468 0 11.85 CISPEP 2 TYR B 467 PRO B 468 0 11.19 SITE 1 AC1 4 ARG B 258 SER B 434 LYS B 436 ARG B 455 SITE 1 AC2 5 ARG A 258 SER A 434 LYS A 436 ARG A 455 SITE 2 AC2 5 LYS B 290 SITE 1 AC3 9 ARG B 289 SER B 292 LYS B 293 THR B 294 SITE 2 AC3 9 LYS B 316 ARG B 318 ASN B 334 ARG B 337 SITE 3 AC3 9 ARG B 347 CRYST1 56.310 83.630 57.680 90.00 94.01 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017759 0.000000 0.001244 0.00000 SCALE2 0.000000 0.011957 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017379 0.00000