PDB Short entry for 3C6E HEADER VIRAL PROTEIN 04-FEB-08 3C6E TITLE CRYSTAL STRUCTURE OF THE PRECURSOR MEMBRANE PROTEIN- ENVELOPE PROTEIN TITLE 2 HETERODIMER FROM THE DENGUE 2 VIRUS AT NEUTRAL PH CAVEAT 3C6E NAG B 1 HAS WRONG CHIRALITY AT ATOM C1 MAN B 4 HAS WRONG CAVEAT 2 3C6E CHIRALITY AT ATOM C5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE PROTEIN E; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 281-674; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PRM; COMPND 8 CHAIN: C; COMPND 9 FRAGMENT: UNP RESIDUES 115-244; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DENGUE VIRUS 2 THAILAND/16681/84; SOURCE 3 ORGANISM_TAXID: 31634; SOURCE 4 STRAIN: 16681; SOURCE 5 EXPRESSION_SYSTEM: DROSOPHILA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FRUIT FLIES; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7215; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: S2 CELLS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PMT/BIP/V5-HIS A; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMT/BIP/PRM-TEV-E; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: DENGUE VIRUS; SOURCE 13 ORGANISM_TAXID: 11060; SOURCE 14 STRAIN: 2; SOURCE 15 EXPRESSION_SYSTEM: DROSOPHILA; SOURCE 16 EXPRESSION_SYSTEM_COMMON: FRUIT FLIES; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 7215; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: S2 CELLS; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PMT/BIP/V5-HIS A; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PMT/BIP/PRM-TEV-E KEYWDS BETA BARREL, PRM-E PROTEIN COMPLEX STRUCTURE, HELICASE, HYDROLASE, KEYWDS 2 NUCLEOTIDE-BINDING, RNA REPLICATION, TRANSMEMBRANE, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.LI REVDAT 6 30-AUG-23 3C6E 1 REMARK REVDAT 5 20-OCT-21 3C6E 1 SEQADV HETSYN REVDAT 4 29-JUL-20 3C6E 1 CAVEAT COMPND REMARK SEQADV REVDAT 4 2 1 HETNAM LINK SITE ATOM REVDAT 3 13-JUL-11 3C6E 1 VERSN REVDAT 2 24-FEB-09 3C6E 1 VERSN REVDAT 1 08-APR-08 3C6E 0 JRNL AUTH L.LI,S.M.LOK,I.M.YU,Y.ZHANG,R.J.KUHN,J.CHEN,M.G.ROSSMANN JRNL TITL THE FLAVIVIRUS PRECURSOR MEMBRANE-ENVELOPE PROTEIN COMPLEX: JRNL TITL 2 STRUCTURE AND MATURATION. JRNL REF SCIENCE V. 319 1830 2008 JRNL REFN ISSN 0036-8075 JRNL PMID 18369147 JRNL DOI 10.1126/SCIENCE.1153263 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 26488 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : R FREE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.250 REMARK 3 FREE R VALUE : 0.293 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2621 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.69 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3797 REMARK 3 BIN FREE R VALUE : 0.4502 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 233 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3686 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 80 REMARK 3 SOLVENT ATOMS : 45 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 70.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 11.72000 REMARK 3 B22 (A**2) : 3.54100 REMARK 3 B33 (A**2) : -15.26100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.42 REMARK 3 ESD FROM SIGMAA (A) : 0.46 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.50 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.54 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.950 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.27 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.565 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ANISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3C6E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-FEB-08. REMARK 100 THE DEPOSITION ID IS D_1000046398. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 MONOCHROMETER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26645 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : 0.08200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.28000 REMARK 200 R SYM FOR SHELL (I) : 0.28000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1TG8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-12% PEG 3350, 0.1M HEPES, PH7.0, REMARK 280 EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 35.55200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.18300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.55200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.18300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 VAL A 151 REMARK 465 GLY A 152 REMARK 465 ASN A 153 REMARK 465 ASP A 154 REMARK 465 THR A 155 REMARK 465 GLY A 190 REMARK 465 ASN A 194 REMARK 465 GLU A 327 REMARK 465 THR C 82 REMARK 465 MET C 83 REMARK 465 GLY C 84 REMARK 465 GLU C 85 REMARK 465 HIS C 86 REMARK 465 SER C 87 REMARK 465 THR C 88 REMARK 465 GLU C 89 REMARK 465 LYS C 90 REMARK 465 SER C 91 REMARK 465 SER C 92 REMARK 465 VAL C 93 REMARK 465 ALA C 94 REMARK 465 LEU C 95 REMARK 465 VAL C 96 REMARK 465 PRO C 97 REMARK 465 HIS C 98 REMARK 465 VAL C 99 REMARK 465 GLY C 100 REMARK 465 MET C 101 REMARK 465 GLY C 102 REMARK 465 LEU C 103 REMARK 465 GLU C 104 REMARK 465 THR C 105 REMARK 465 ARG C 106 REMARK 465 THR C 107 REMARK 465 GLU C 108 REMARK 465 THR C 109 REMARK 465 TRP C 110 REMARK 465 MET C 111 REMARK 465 SER C 112 REMARK 465 SER C 113 REMARK 465 GLU C 114 REMARK 465 GLY C 115 REMARK 465 ALA C 116 REMARK 465 TRP C 117 REMARK 465 LYS C 118 REMARK 465 HIS C 119 REMARK 465 VAL C 120 REMARK 465 GLN C 121 REMARK 465 ARG C 122 REMARK 465 ILE C 123 REMARK 465 GLU C 124 REMARK 465 THR C 125 REMARK 465 TRP C 126 REMARK 465 ILE C 127 REMARK 465 LEU C 128 REMARK 465 ARG C 129 REMARK 465 HIS C 130 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 HIS C 2 O2 MAN B 4 1.96 REMARK 500 O3 MAN B 3 O5 MAN B 4 2.03 REMARK 500 OD1 ASN A 67 O5 NAG B 1 2.10 REMARK 500 CG ASN A 67 C1 NAG B 1 2.10 REMARK 500 OD1 ASN C 69 O1 NDG C 1396 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 334 C ILE A 335 N -0.316 REMARK 500 ILE A 335 C PRO A 336 N -0.289 REMARK 500 THR C 48 C ILE C 49 N -0.219 REMARK 500 ILE C 49 C THR C 50 N -0.162 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 332 N - CA - C ANGL. DEV. = -21.0 DEGREES REMARK 500 LYS A 334 CA - C - N ANGL. DEV. = 15.0 DEGREES REMARK 500 LYS A 334 O - C - N ANGL. DEV. = -15.8 DEGREES REMARK 500 ILE A 335 C - N - CA ANGL. DEV. = 18.2 DEGREES REMARK 500 PRO A 336 C - N - CD ANGL. DEV. = -12.6 DEGREES REMARK 500 GLU A 383 N - CA - C ANGL. DEV. = 22.1 DEGREES REMARK 500 PRO A 384 N - CA - C ANGL. DEV. = -21.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 67 68.09 33.57 REMARK 500 THR A 76 -17.79 93.20 REMARK 500 LYS A 88 -8.16 -59.00 REMARK 500 HIS A 149 -78.17 -145.16 REMARK 500 PRO A 166 -4.61 -59.19 REMARK 500 PRO A 187 22.02 -67.84 REMARK 500 ARG A 188 112.00 -28.58 REMARK 500 GLU A 202 73.71 60.65 REMARK 500 GLN A 211 -11.93 67.60 REMARK 500 ALA A 224 41.77 -76.00 REMARK 500 THR A 226 -12.59 -148.86 REMARK 500 ASN A 230 44.82 -74.47 REMARK 500 THR A 262 11.94 -65.71 REMARK 500 TYR A 299 -167.07 -126.55 REMARK 500 CYS A 302 127.33 -27.71 REMARK 500 VAL A 308 109.28 -52.50 REMARK 500 ASP A 329 57.84 -52.68 REMARK 500 GLU A 338 126.84 -172.04 REMARK 500 ASP A 362 63.45 65.19 REMARK 500 GLU A 383 20.65 -48.85 REMARK 500 PRO A 384 -65.07 -103.83 REMARK 500 THR C 4 -159.12 -135.51 REMARK 500 GLU C 28 -39.67 -35.14 REMARK 500 ASP C 29 31.31 -87.94 REMARK 500 CYS C 45 -152.86 -148.83 REMARK 500 GLN C 58 52.98 33.74 REMARK 500 SER C 70 -32.38 -144.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ILE C 49 -10.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3C5X RELATED DB: PDB REMARK 900 THE SAME PROTEIN CRYSTALLIZED AT PH 5.5 DBREF 3C6E A 1 394 UNP O09234 O09234_DEN26 281 674 DBREF 3C6E C 1 130 UNP O09234 O09234_DEN26 115 244 SEQADV 3C6E GLY A -7 UNP O09234 EXPRESSION TAG SEQADV 3C6E GLU A -6 UNP O09234 EXPRESSION TAG SEQADV 3C6E ASN A -5 UNP O09234 EXPRESSION TAG SEQADV 3C6E LEU A -4 UNP O09234 EXPRESSION TAG SEQADV 3C6E TYR A -3 UNP O09234 EXPRESSION TAG SEQADV 3C6E PHE A -2 UNP O09234 EXPRESSION TAG SEQADV 3C6E GLN A -1 UNP O09234 EXPRESSION TAG SEQADV 3C6E GLY A 0 UNP O09234 EXPRESSION TAG SEQADV 3C6E SER C 87 UNP O09234 ARG 201 ENGINEERED MUTATION SEQADV 3C6E THR C 88 UNP O09234 ARG 202 ENGINEERED MUTATION SEQADV 3C6E SER C 91 UNP O09234 ARG 205 ENGINEERED MUTATION SEQRES 1 A 402 GLY GLU ASN LEU TYR PHE GLN GLY MET ARG CYS ILE GLY SEQRES 2 A 402 MET SER ASN ARG ASP PHE VAL GLU GLY VAL SER GLY GLY SEQRES 3 A 402 SER TRP VAL ASP ILE VAL LEU GLU HIS GLY SER CYS VAL SEQRES 4 A 402 THR THR MET ALA LYS ASN LYS PRO THR LEU ASP PHE GLU SEQRES 5 A 402 LEU ILE LYS THR GLU ALA LYS GLN PRO ALA THR LEU ARG SEQRES 6 A 402 LYS TYR CYS ILE GLU ALA LYS LEU THR ASN THR THR THR SEQRES 7 A 402 GLU SER ARG CYS PRO THR GLN GLY GLU PRO SER LEU ASN SEQRES 8 A 402 GLU GLU GLN ASP LYS ARG PHE VAL CYS LYS HIS SER MET SEQRES 9 A 402 VAL ASP ARG GLY TRP GLY ASN GLY CYS GLY LEU PHE GLY SEQRES 10 A 402 LYS GLY GLY ILE VAL THR CYS ALA MET PHE ARG CYS LYS SEQRES 11 A 402 LYS ASN MET GLU GLY LYS VAL VAL GLN PRO GLU ASN LEU SEQRES 12 A 402 GLU TYR THR ILE VAL ILE THR PRO HIS SER GLY GLU GLU SEQRES 13 A 402 HIS ALA VAL GLY ASN ASP THR GLY LYS HIS GLY LYS GLU SEQRES 14 A 402 ILE LYS ILE THR PRO GLN SER SER ILE THR GLU ALA GLU SEQRES 15 A 402 LEU THR GLY TYR GLY THR VAL THR MET GLU CYS SER PRO SEQRES 16 A 402 ARG THR GLY LEU ASP PHE ASN GLU MET VAL LEU LEU GLN SEQRES 17 A 402 MET GLU ASN LYS ALA TRP LEU VAL HIS ARG GLN TRP PHE SEQRES 18 A 402 LEU ASP LEU PRO LEU PRO TRP LEU PRO GLY ALA ASP THR SEQRES 19 A 402 GLN GLY SER ASN TRP ILE GLN LYS GLU THR LEU VAL THR SEQRES 20 A 402 PHE LYS ASN PRO HIS ALA LYS LYS GLN ASP VAL VAL VAL SEQRES 21 A 402 LEU GLY SER GLN GLU GLY ALA MET HIS THR ALA LEU THR SEQRES 22 A 402 GLY ALA THR GLU ILE GLN MET SER SER GLY ASN LEU LEU SEQRES 23 A 402 PHE THR GLY HIS LEU LYS CYS ARG LEU ARG MET ASP LYS SEQRES 24 A 402 LEU GLN LEU LYS GLY MET SER TYR SER MET CYS THR GLY SEQRES 25 A 402 LYS PHE LYS VAL VAL LYS GLU ILE ALA GLU THR GLN HIS SEQRES 26 A 402 GLY THR ILE VAL ILE ARG VAL GLN TYR GLU GLY ASP GLY SEQRES 27 A 402 SER PRO CYS LYS ILE PRO PHE GLU ILE MET ASP LEU GLU SEQRES 28 A 402 LYS ARG HIS VAL LEU GLY ARG LEU ILE THR VAL ASN PRO SEQRES 29 A 402 ILE VAL THR GLU LYS ASP SER PRO VAL ASN ILE GLU ALA SEQRES 30 A 402 GLU PRO PRO PHE GLY ASP SER TYR ILE ILE ILE GLY VAL SEQRES 31 A 402 GLU PRO GLY GLN LEU LYS LEU ASN TRP PHE LYS LYS SEQRES 1 C 130 PHE HIS LEU THR THR ARG ASN GLY GLU PRO HIS MET ILE SEQRES 2 C 130 VAL SER ARG GLN GLU LYS GLY LYS SER LEU LEU PHE LYS SEQRES 3 C 130 THR GLU ASP GLY VAL ASN MET CYS THR LEU MET ALA MET SEQRES 4 C 130 ASP LEU GLY GLU LEU CYS GLU ASP THR ILE THR TYR LYS SEQRES 5 C 130 CYS PRO LEU LEU ARG GLN ASN GLU PRO GLU ASP ILE ASP SEQRES 6 C 130 CYS TRP CYS ASN SER THR SER THR TRP VAL THR TYR GLY SEQRES 7 C 130 THR CYS THR THR MET GLY GLU HIS SER THR GLU LYS SER SEQRES 8 C 130 SER VAL ALA LEU VAL PRO HIS VAL GLY MET GLY LEU GLU SEQRES 9 C 130 THR ARG THR GLU THR TRP MET SER SER GLU GLY ALA TRP SEQRES 10 C 130 LYS HIS VAL GLN ARG ILE GLU THR TRP ILE LEU ARG HIS MODRES 3C6E ASN A 67 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NDG B 2 14 HET MAN B 3 11 HET MAN B 4 11 HET NDG C1396 15 HET NAG C1397 15 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM NDG 2-ACETAMIDO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN NDG N-ACETYL-ALPHA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 NDG ALPHA-D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2- HETSYN 3 NDG ACETAMIDO-2-DEOXY-GLUCOSE; 2-(ACETYLAMINO)-2-DEOXY-A- HETSYN 4 NDG D-GLUCOPYRANOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 3 NDG 2(C8 H15 N O6) FORMUL 3 MAN 2(C6 H12 O6) FORMUL 6 HOH *45(H2 O) HELIX 1 1 GLY A 0 GLY A 5 1 6 HELIX 2 2 LEU A 82 ASP A 87 5 6 HELIX 3 3 GLY A 100 GLY A 104 5 5 HELIX 4 4 GLN A 233 THR A 236 5 4 HELIX 5 5 GLN A 256 THR A 265 1 10 HELIX 6 6 SER C 15 LYS C 19 5 5 SHEET 1 A 5 ARG A 9 GLU A 13 0 SHEET 2 A 5 CYS A 30 ALA A 35 1 O THR A 32 N ASP A 10 SHEET 3 A 5 LYS A 38 ALA A 50 -1 O PHE A 43 N VAL A 31 SHEET 4 A 5 LEU A 135 PRO A 143 -1 O THR A 138 N LYS A 47 SHEET 5 A 5 LYS A 160 ILE A 164 -1 O LYS A 160 N ILE A 141 SHEET 1 B 5 ARG A 9 GLU A 13 0 SHEET 2 B 5 CYS A 30 ALA A 35 1 O THR A 32 N ASP A 10 SHEET 3 B 5 LYS A 38 ALA A 50 -1 O PHE A 43 N VAL A 31 SHEET 4 B 5 ASN A 276 LEU A 278 -1 O LEU A 277 N ALA A 50 SHEET 5 B 5 MET A 272 SER A 273 -1 N SER A 273 O ASN A 276 SHEET 1 C 4 VAL A 21 GLU A 26 0 SHEET 2 C 4 HIS A 282 ARG A 288 -1 O CYS A 285 N ILE A 23 SHEET 3 C 4 GLY A 179 SER A 186 -1 N THR A 182 O ARG A 288 SHEET 4 C 4 THR A 171 LEU A 175 -1 N LEU A 175 O GLY A 179 SHEET 1 D 4 PHE A 90 ARG A 99 0 SHEET 2 D 4 GLY A 109 VAL A 129 -1 O GLY A 111 N VAL A 97 SHEET 3 D 4 ALA A 54 SER A 72 -1 N GLU A 62 O LYS A 122 SHEET 4 D 4 TRP A 220 PRO A 222 -1 O LEU A 221 N LYS A 58 SHEET 1 E 5 PHE A 90 ARG A 99 0 SHEET 2 E 5 GLY A 109 VAL A 129 -1 O GLY A 111 N VAL A 97 SHEET 3 E 5 MET A 196 GLN A 200 -1 O LEU A 198 N LYS A 128 SHEET 4 E 5 ALA A 205 HIS A 209 -1 O VAL A 208 N VAL A 197 SHEET 5 E 5 GLU A 269 ILE A 270 -1 O ILE A 270 N ALA A 205 SHEET 1 F 2 VAL A 238 PHE A 240 0 SHEET 2 F 2 VAL A 250 VAL A 252 -1 O VAL A 251 N THR A 239 SHEET 1 G 4 ALA A 313 GLU A 314 0 SHEET 2 G 4 ILE A 320 ILE A 322 -1 O VAL A 321 N ALA A 313 SHEET 3 G 4 ILE A 367 GLU A 370 -1 O ALA A 369 N ILE A 320 SHEET 4 G 4 ARG A 350 LEU A 351 -1 N ARG A 350 O GLU A 370 SHEET 1 H 3 ILE A 339 MET A 340 0 SHEET 2 H 3 GLY A 374 ILE A 380 -1 O TYR A 377 N MET A 340 SHEET 3 H 3 LEU A 387 LYS A 393 -1 O LEU A 389 N ILE A 378 SHEET 1 I 4 HIS C 2 ARG C 6 0 SHEET 2 I 4 GLU C 9 ILE C 13 -1 O GLU C 9 N ARG C 6 SHEET 3 I 4 THR C 73 THR C 76 1 O THR C 76 N MET C 12 SHEET 4 I 4 THR C 50 CYS C 53 -1 N CYS C 53 O THR C 73 SHEET 1 J 3 LEU C 23 THR C 27 0 SHEET 2 J 3 GLY C 30 LEU C 36 -1 O CYS C 34 N LEU C 23 SHEET 3 J 3 CYS C 66 CYS C 68 -1 O TRP C 67 N THR C 35 SSBOND 1 CYS A 3 CYS A 30 1555 1555 2.05 SSBOND 2 CYS A 60 CYS A 121 1555 1555 2.05 SSBOND 3 CYS A 74 CYS A 105 1555 1555 2.04 SSBOND 4 CYS A 92 CYS A 116 1555 1555 2.04 SSBOND 5 CYS A 185 CYS A 285 1555 1555 2.06 SSBOND 6 CYS A 302 CYS A 333 1555 1555 2.03 SSBOND 7 CYS C 34 CYS C 68 1555 1555 2.04 SSBOND 8 CYS C 45 CYS C 80 1555 1555 2.04 SSBOND 9 CYS C 53 CYS C 66 1555 1555 2.03 LINK ND2 ASN A 67 C1 NAG B 1 1555 1555 1.32 LINK O4 NAG B 1 C1 NDG B 2 1555 1555 1.57 LINK O4 NDG B 2 C1 MAN B 3 1555 1555 1.66 LINK O3 MAN B 3 C1 MAN B 4 1555 1555 1.09 CRYST1 71.104 108.366 108.956 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014064 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009228 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009178 0.00000