PDB Short entry for 3CEK HEADER TRANSFERASE 29-FEB-08 3CEK TITLE CRYSTAL STRUCTURE OF HUMAN DUAL SPECIFICITY PROTEIN KINASE (TTK) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUAL SPECIFICITY PROTEIN KINASE TTK; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PROTEIN KINASE DOMAIN: RESIDUES 519-808; COMPND 5 SYNONYM: PHOSPHOTYROSINE PICKED THREONINE-PROTEIN KINASE, PYT; COMPND 6 EC: 2.7.12.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TTK, MPS1L1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-R3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS TTK, HMPS1, PYT, ESK, KINASE, DUAL SPECIFICITY, PHOSPHOTYROSINE KEYWDS 2 PICKED THREONINE KINASE, SGC, STRUCTURAL GENOMICS CONSORTIUM, ATP- KEYWDS 3 BINDING, NUCLEOTIDE-BINDING, PHOSPHOPROTEIN, SERINE/THREONINE- KEYWDS 4 PROTEIN KINASE, TRANSFERASE, TYROSINE-PROTEIN KINASE EXPDTA X-RAY DIFFRACTION AUTHOR P.FILIPPAKOPOULOS,M.SOUNDARARAJAN,T.KEATES,J.M.ELKINS,O.KING, AUTHOR 2 O.FEDOROV,S.S.PICAUD,A.C.W.PIKE,A.ROOS,E.PILKA,F.VON DELFT, AUTHOR 3 C.H.ARROWSMITH,A.M.EDWARDS,J.WEIGELT,C.BOUNTRA,S.KNAPP,STRUCTURAL AUTHOR 4 GENOMICS CONSORTIUM (SGC) REVDAT 6 30-AUG-23 3CEK 1 REMARK SEQADV REVDAT 5 25-OCT-17 3CEK 1 REMARK REVDAT 4 13-JUL-11 3CEK 1 VERSN REVDAT 3 01-SEP-10 3CEK 1 JRNL REVDAT 2 24-FEB-09 3CEK 1 VERSN REVDAT 1 18-MAR-08 3CEK 0 JRNL AUTH N.KWIATKOWSKI,N.JELLUMA,P.FILIPPAKOPOULOS,M.SOUNDARARAJAN, JRNL AUTH 2 M.S.MANAK,M.KWON,H.G.CHOI,T.SIM,Q.L.DEVERAUX,S.ROTTMANN, JRNL AUTH 3 D.PELLMAN,J.V.SHAH,G.J.KOPS,S.KNAPP,N.S.GRAY JRNL TITL SMALL-MOLECULE KINASE INHIBITORS PROVIDE INSIGHT INTO MPS1 JRNL TITL 2 CELL CYCLE FUNCTION. JRNL REF NAT.CHEM.BIOL. V. 6 359 2010 JRNL REFN ISSN 1552-4450 JRNL PMID 20383151 JRNL DOI 10.1038/NCHEMBIO.345 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 19053 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 980 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1263 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2390 REMARK 3 BIN FREE R VALUE SET COUNT : 91 REMARK 3 BIN FREE R VALUE : 0.3960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2031 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 69 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.35000 REMARK 3 B22 (A**2) : 2.80000 REMARK 3 B33 (A**2) : -0.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.204 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.201 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.139 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.479 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2106 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1426 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2841 ; 1.472 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3450 ; 0.946 ; 3.004 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 253 ; 6.465 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 91 ;39.339 ;25.385 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 368 ;15.097 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;25.939 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 313 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2267 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 382 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1278 ; 2.266 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 510 ; 0.592 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2067 ; 3.771 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 828 ; 6.184 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 774 ; 8.408 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 515 A 533 REMARK 3 ORIGIN FOR THE GROUP (A): 11.2493 24.0457 51.6312 REMARK 3 T TENSOR REMARK 3 T11: -0.0038 T22: 0.1406 REMARK 3 T33: -0.0798 T12: 0.0007 REMARK 3 T13: 0.0023 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 7.0981 L22: 8.3594 REMARK 3 L33: 6.5233 L12: 2.0405 REMARK 3 L13: -1.1883 L23: -1.6254 REMARK 3 S TENSOR REMARK 3 S11: 0.0762 S12: -0.5597 S13: -0.5308 REMARK 3 S21: 0.6729 S22: 0.0365 S23: -0.7990 REMARK 3 S31: 0.3791 S32: 0.4265 S33: -0.1127 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 534 A 563 REMARK 3 ORIGIN FOR THE GROUP (A): 10.6071 21.5732 45.1626 REMARK 3 T TENSOR REMARK 3 T11: -0.1365 T22: -0.0209 REMARK 3 T33: -0.1400 T12: -0.0437 REMARK 3 T13: -0.0033 T23: 0.0616 REMARK 3 L TENSOR REMARK 3 L11: 6.7695 L22: 1.8808 REMARK 3 L33: 9.5431 L12: -0.6564 REMARK 3 L13: -4.1588 L23: 0.2277 REMARK 3 S TENSOR REMARK 3 S11: -0.1600 S12: -0.1598 S13: -0.5042 REMARK 3 S21: 0.2704 S22: 0.0084 S23: -0.2930 REMARK 3 S31: 0.7018 S32: -0.0272 S33: 0.1516 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 564 A 661 REMARK 3 ORIGIN FOR THE GROUP (A): -2.7275 21.4005 36.8064 REMARK 3 T TENSOR REMARK 3 T11: -0.1188 T22: -0.0975 REMARK 3 T33: -0.1603 T12: 0.0009 REMARK 3 T13: 0.0089 T23: 0.0277 REMARK 3 L TENSOR REMARK 3 L11: 5.4718 L22: 1.5602 REMARK 3 L33: 1.0873 L12: 1.4718 REMARK 3 L13: 1.7296 L23: 0.5137 REMARK 3 S TENSOR REMARK 3 S11: 0.0960 S12: -0.6673 S13: -0.0921 REMARK 3 S21: 0.1726 S22: -0.1202 S23: 0.1596 REMARK 3 S31: 0.0230 S32: -0.1002 S33: 0.0242 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 662 A 686 REMARK 3 ORIGIN FOR THE GROUP (A): 2.2798 16.6654 31.9893 REMARK 3 T TENSOR REMARK 3 T11: 0.0004 T22: 0.0865 REMARK 3 T33: 0.0312 T12: -0.0657 REMARK 3 T13: -0.0017 T23: -0.0302 REMARK 3 L TENSOR REMARK 3 L11: 9.0883 L22: 5.4070 REMARK 3 L33: 8.5324 L12: 5.3775 REMARK 3 L13: -1.7295 L23: -5.2958 REMARK 3 S TENSOR REMARK 3 S11: -0.4877 S12: -0.4713 S13: -0.9578 REMARK 3 S21: -0.3335 S22: 0.5562 S23: -1.1517 REMARK 3 S31: 1.4902 S32: 0.4881 S33: -0.0685 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 687 A 739 REMARK 3 ORIGIN FOR THE GROUP (A): -9.4294 6.2206 26.6278 REMARK 3 T TENSOR REMARK 3 T11: -0.1330 T22: -0.1790 REMARK 3 T33: 0.0113 T12: 0.0112 REMARK 3 T13: -0.0710 T23: 0.0223 REMARK 3 L TENSOR REMARK 3 L11: 4.0194 L22: 7.7003 REMARK 3 L33: 4.1758 L12: -1.2625 REMARK 3 L13: 1.7378 L23: -0.1760 REMARK 3 S TENSOR REMARK 3 S11: 0.0778 S12: -0.1217 S13: -0.6932 REMARK 3 S21: -0.1412 S22: -0.1469 S23: -0.1632 REMARK 3 S31: 0.7027 S32: 0.4841 S33: 0.0691 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 740 A 753 REMARK 3 ORIGIN FOR THE GROUP (A): -9.4680 -3.0721 21.5845 REMARK 3 T TENSOR REMARK 3 T11: 0.0725 T22: -0.1045 REMARK 3 T33: 0.0751 T12: 0.0301 REMARK 3 T13: -0.0219 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 9.7460 L22: 1.6188 REMARK 3 L33: 6.2411 L12: -2.0028 REMARK 3 L13: -1.0340 L23: -2.5082 REMARK 3 S TENSOR REMARK 3 S11: 0.2756 S12: 0.2497 S13: -0.0320 REMARK 3 S21: -0.0147 S22: -0.2316 S23: 0.0472 REMARK 3 S31: 0.4841 S32: -0.0201 S33: -0.0440 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 754 A 794 REMARK 3 ORIGIN FOR THE GROUP (A): -20.4692 12.9687 25.3237 REMARK 3 T TENSOR REMARK 3 T11: -0.2135 T22: -0.0907 REMARK 3 T33: -0.0036 T12: -0.0697 REMARK 3 T13: -0.0757 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 2.8507 L22: 5.8861 REMARK 3 L33: 3.4244 L12: -2.0049 REMARK 3 L13: -0.1179 L23: -0.4027 REMARK 3 S TENSOR REMARK 3 S11: -0.0149 S12: 0.2370 S13: -0.6307 REMARK 3 S21: -0.0349 S22: -0.0278 S23: 0.6191 REMARK 3 S31: 0.2909 S32: -0.6709 S33: 0.0427 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3CEK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000046680. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97912 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19054 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 40.456 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 10.80 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : 0.08400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 9.30 REMARK 200 R MERGE FOR SHELL (I) : 0.89800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 2QKR, 2H9V, 2F2U, 2EUE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 55% PEG 300, 0.25M NACL, NA/K REMARK 280 PHOSPHATE PH 6.4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.92300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.73350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 55.93600 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.92300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.73350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.93600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.92300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.73350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.93600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.92300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 53.73350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 55.93600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE GEL FILTRATION SUGGESTS A MONOMERIC REMARK 300 ASSEMBLY OF THE BIOLOGICAL UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 938 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 496 REMARK 465 HIS A 497 REMARK 465 HIS A 498 REMARK 465 HIS A 499 REMARK 465 HIS A 500 REMARK 465 HIS A 501 REMARK 465 HIS A 502 REMARK 465 SER A 503 REMARK 465 SER A 504 REMARK 465 GLY A 505 REMARK 465 VAL A 506 REMARK 465 ASP A 507 REMARK 465 LEU A 508 REMARK 465 GLY A 509 REMARK 465 THR A 510 REMARK 465 GLU A 511 REMARK 465 ASN A 512 REMARK 465 LEU A 513 REMARK 465 TYR A 514 REMARK 465 MET A 671 REMARK 465 GLN A 672 REMARK 465 PRO A 673 REMARK 465 ASP A 674 REMARK 465 THR A 675 REMARK 465 THR A 676 REMARK 465 SER A 677 REMARK 465 VAL A 678 REMARK 465 VAL A 679 REMARK 465 LYS A 680 REMARK 465 ASP A 681 REMARK 465 SER A 682 REMARK 465 GLN A 683 REMARK 465 VAL A 684 REMARK 465 SER A 699 REMARK 465 SER A 700 REMARK 465 SER A 701 REMARK 465 ARG A 702 REMARK 465 GLU A 703 REMARK 465 ASN A 704 REMARK 465 GLY A 705 REMARK 465 LYS A 706 REMARK 465 SER A 707 REMARK 465 LYS A 708 REMARK 465 THR A 795 REMARK 465 HIS A 796 REMARK 465 PRO A 797 REMARK 465 VAL A 798 REMARK 465 ASN A 799 REMARK 465 GLN A 800 REMARK 465 MET A 801 REMARK 465 ALA A 802 REMARK 465 LYS A 803 REMARK 465 GLY A 804 REMARK 465 THR A 805 REMARK 465 THR A 806 REMARK 465 GLU A 807 REMARK 465 GLU A 808 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 515 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 523 CZ NH1 NH2 REMARK 470 LYS A 529 NZ REMARK 470 SER A 533 OG REMARK 470 SER A 536 OG REMARK 470 LYS A 538 NZ REMARK 470 LYS A 546 CE NZ REMARK 470 LYS A 547 CE NZ REMARK 470 GLU A 558 CD OE1 OE2 REMARK 470 GLU A 559 CG CD OE1 OE2 REMARK 470 LYS A 577 CE NZ REMARK 470 LYS A 614 CE NZ REMARK 470 LYS A 615 CE NZ REMARK 470 LYS A 616 CE NZ REMARK 470 LYS A 617 CG CD CE NZ REMARK 470 ASP A 657 CG OD1 OD2 REMARK 470 THR A 686 OG1 CG2 REMARK 470 SER A 709 OG REMARK 470 LYS A 710 CG CD CE NZ REMARK 470 ILE A 711 CD1 REMARK 470 ILE A 741 CG1 CG2 CD1 REMARK 470 GLU A 753 CD OE1 OE2 REMARK 470 ASP A 758 CG OD1 OD2 REMARK 470 LYS A 773 NZ REMARK 470 LYS A 777 CE NZ REMARK 470 GLN A 794 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 566 O HOH A 948 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 536 56.84 -97.91 REMARK 500 LYS A 617 -77.58 -66.49 REMARK 500 SER A 646 -2.70 78.98 REMARK 500 ASP A 647 43.08 -145.60 REMARK 500 ASP A 657 39.49 70.49 REMARK 500 THR A 686 -42.68 -135.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 7PE A 901 REMARK 610 7PE A 902 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 7PE A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 7PE A 902 DBREF 3CEK A 519 808 UNP P33981 TTK_HUMAN 519 808 SEQADV 3CEK MET A 496 UNP P33981 EXPRESSION TAG SEQADV 3CEK HIS A 497 UNP P33981 EXPRESSION TAG SEQADV 3CEK HIS A 498 UNP P33981 EXPRESSION TAG SEQADV 3CEK HIS A 499 UNP P33981 EXPRESSION TAG SEQADV 3CEK HIS A 500 UNP P33981 EXPRESSION TAG SEQADV 3CEK HIS A 501 UNP P33981 EXPRESSION TAG SEQADV 3CEK HIS A 502 UNP P33981 EXPRESSION TAG SEQADV 3CEK SER A 503 UNP P33981 EXPRESSION TAG SEQADV 3CEK SER A 504 UNP P33981 EXPRESSION TAG SEQADV 3CEK GLY A 505 UNP P33981 EXPRESSION TAG SEQADV 3CEK VAL A 506 UNP P33981 EXPRESSION TAG SEQADV 3CEK ASP A 507 UNP P33981 EXPRESSION TAG SEQADV 3CEK LEU A 508 UNP P33981 EXPRESSION TAG SEQADV 3CEK GLY A 509 UNP P33981 EXPRESSION TAG SEQADV 3CEK THR A 510 UNP P33981 EXPRESSION TAG SEQADV 3CEK GLU A 511 UNP P33981 EXPRESSION TAG SEQADV 3CEK ASN A 512 UNP P33981 EXPRESSION TAG SEQADV 3CEK LEU A 513 UNP P33981 EXPRESSION TAG SEQADV 3CEK TYR A 514 UNP P33981 EXPRESSION TAG SEQADV 3CEK PHE A 515 UNP P33981 EXPRESSION TAG SEQADV 3CEK GLN A 516 UNP P33981 EXPRESSION TAG SEQADV 3CEK SER A 517 UNP P33981 EXPRESSION TAG SEQADV 3CEK MET A 518 UNP P33981 EXPRESSION TAG SEQRES 1 A 313 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 313 GLY THR GLU ASN LEU TYR PHE GLN SER MET SER VAL LYS SEQRES 3 A 313 GLY ARG ILE TYR SER ILE LEU LYS GLN ILE GLY SER GLY SEQRES 4 A 313 GLY SER SER LYS VAL PHE GLN VAL LEU ASN GLU LYS LYS SEQRES 5 A 313 GLN ILE TYR ALA ILE LYS TYR VAL ASN LEU GLU GLU ALA SEQRES 6 A 313 ASP ASN GLN THR LEU ASP SER TYR ARG ASN GLU ILE ALA SEQRES 7 A 313 TYR LEU ASN LYS LEU GLN GLN HIS SER ASP LYS ILE ILE SEQRES 8 A 313 ARG LEU TYR ASP TYR GLU ILE THR ASP GLN TYR ILE TYR SEQRES 9 A 313 MET VAL MET GLU CYS GLY ASN ILE ASP LEU ASN SER TRP SEQRES 10 A 313 LEU LYS LYS LYS LYS SER ILE ASP PRO TRP GLU ARG LYS SEQRES 11 A 313 SER TYR TRP LYS ASN MET LEU GLU ALA VAL HIS THR ILE SEQRES 12 A 313 HIS GLN HIS GLY ILE VAL HIS SER ASP LEU LYS PRO ALA SEQRES 13 A 313 ASN PHE LEU ILE VAL ASP GLY MET LEU LYS LEU ILE ASP SEQRES 14 A 313 PHE GLY ILE ALA ASN GLN MET GLN PRO ASP THR THR SER SEQRES 15 A 313 VAL VAL LYS ASP SER GLN VAL GLY THR VAL ASN TYR MET SEQRES 16 A 313 PRO PRO GLU ALA ILE LYS ASP MET SER SER SER ARG GLU SEQRES 17 A 313 ASN GLY LYS SER LYS SER LYS ILE SER PRO LYS SER ASP SEQRES 18 A 313 VAL TRP SER LEU GLY CYS ILE LEU TYR TYR MET THR TYR SEQRES 19 A 313 GLY LYS THR PRO PHE GLN GLN ILE ILE ASN GLN ILE SER SEQRES 20 A 313 LYS LEU HIS ALA ILE ILE ASP PRO ASN HIS GLU ILE GLU SEQRES 21 A 313 PHE PRO ASP ILE PRO GLU LYS ASP LEU GLN ASP VAL LEU SEQRES 22 A 313 LYS CYS CYS LEU LYS ARG ASP PRO LYS GLN ARG ILE SER SEQRES 23 A 313 ILE PRO GLU LEU LEU ALA HIS PRO TYR VAL GLN ILE GLN SEQRES 24 A 313 THR HIS PRO VAL ASN GLN MET ALA LYS GLY THR THR GLU SEQRES 25 A 313 GLU HET 7PE A 901 16 HET 7PE A 902 16 HETNAM 7PE 2-(2-(2-(2-(2-(2-ETHOXYETHOXY)ETHOXY)ETHOXY)ETHOXY) HETNAM 2 7PE ETHOXY)ETHANOL HETSYN 7PE POLYETHYLENE GLYCOL FRAGMENT FORMUL 2 7PE 2(C14 H30 O7) FORMUL 4 HOH *69(H2 O) HELIX 1 1 ASP A 561 GLN A 579 1 19 HELIX 2 2 GLN A 580 SER A 582 5 3 HELIX 3 3 LEU A 609 LYS A 616 1 8 HELIX 4 4 ASP A 620 HIS A 641 1 22 HELIX 5 5 LYS A 649 ALA A 651 5 3 HELIX 6 6 THR A 686 MET A 690 5 5 HELIX 7 7 PRO A 691 LYS A 696 1 6 HELIX 8 8 SER A 712 GLY A 730 1 19 HELIX 9 9 ASN A 739 ASP A 749 1 11 HELIX 10 10 GLU A 761 LEU A 772 1 12 HELIX 11 11 SER A 781 ALA A 787 1 7 HELIX 12 12 HIS A 788 ILE A 793 1 6 SHEET 1 A 6 SER A 517 VAL A 520 0 SHEET 2 A 6 ARG A 523 GLY A 532 -1 O ARG A 523 N VAL A 520 SHEET 3 A 6 SER A 537 LEU A 543 -1 O GLN A 541 N LYS A 529 SHEET 4 A 6 ILE A 549 ASN A 556 -1 O TYR A 554 N LYS A 538 SHEET 5 A 6 TYR A 597 MET A 602 -1 O MET A 602 N ALA A 551 SHEET 6 A 6 LEU A 588 ILE A 593 -1 N ASP A 590 O VAL A 601 SHEET 1 B 3 ILE A 607 ASP A 608 0 SHEET 2 B 3 PHE A 653 VAL A 656 -1 O ILE A 655 N ILE A 607 SHEET 3 B 3 MET A 659 LEU A 662 -1 O MET A 659 N VAL A 656 CISPEP 1 GLY A 535 SER A 536 0 -15.93 SITE 1 AC1 6 SER A 537 LYS A 553 TYR A 568 MET A 600 SITE 2 AC1 6 ILE A 663 ALA A 668 SITE 1 AC2 8 ASN A 576 GLN A 580 LEU A 588 TYR A 589 SITE 2 AC2 8 TYR A 591 ASP A 763 ASP A 766 PRO A 789 CRYST1 69.846 107.467 111.872 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014317 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009305 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008939 0.00000