PDB Short entry for 3CMY HEADER TRANSCRIPTION REGULATOR/DNA 24-MAR-08 3CMY TITLE STRUCTURE OF A HOMEODOMAIN IN COMPLEX WITH DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PAIRED BOX PROTEIN PAX-3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HOMEODOMAIN (UNP RESIDUES 219-278); COMPND 5 SYNONYM: HUP2; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5'-D(*DAP*DCP*DAP*DTP*DAP*DAP*DP*DCP*DGP*DAP*DTP*DTP*DAP*DC COMPND 9 )-3'; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: 5'-D(*DTP*DGP*DTP*DAP*DAP*DTP*DCP*DGP*DAP*DTP*DTP*DAP*DTP*D COMPND 14 G)-3'; COMPND 15 CHAIN: C; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PAX3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C41; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-6H; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES KEYWDS DNA-BINDING PROTEIN, DNA, TRANSCRIPTION REGULATION, TRANSCRIPTION KEYWDS 2 REGULATOR-DNA COMPLEX EXPDTA X-RAY DIFFRACTION NUMMDL 2 AUTHOR G.BIRRANE,J.A.A.LADIAS,A.SONI REVDAT 4 03-APR-24 3CMY 1 REMARK REVDAT 3 21-FEB-24 3CMY 1 REMARK SEQADV REVDAT 2 13-JUL-11 3CMY 1 VERSN REVDAT 1 17-FEB-09 3CMY 0 JRNL AUTH G.BIRRANE,A.SONI,J.A.LADIAS JRNL TITL STRUCTURAL BASIS FOR DNA RECOGNITION BY THE HUMAN PAX3 JRNL TITL 2 HOMEODOMAIN. JRNL REF BIOCHEMISTRY V. 48 1148 2009 JRNL REFN ISSN 0006-2960 JRNL PMID 19199574 JRNL DOI 10.1021/BI802052Y REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 8971 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 452 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 662 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE SET COUNT : 34 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 523 REMARK 3 NUCLEIC ACID ATOMS : 305 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 84 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 38.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.152 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.140 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.102 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 958 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 587 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1365 ; 1.533 ; 2.410 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1405 ; 1.427 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 63 ; 4.854 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 37 ;24.238 ;20.811 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 101 ;14.415 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;11.813 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): 809 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 183 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 28 REMARK 3 ORIGIN FOR THE GROUP (A): 7.3670 9.2750 8.3400 REMARK 3 T TENSOR REMARK 3 T11: -0.2181 T22: -0.1433 REMARK 3 T33: -0.0653 T12: -0.0267 REMARK 3 T13: -0.0545 T23: -0.0226 REMARK 3 L TENSOR REMARK 3 L11: 3.3360 L22: 4.3758 REMARK 3 L33: 4.5006 L12: 0.1075 REMARK 3 L13: -0.1828 L23: -0.6529 REMARK 3 S TENSOR REMARK 3 S11: -0.0364 S12: -0.2878 S13: 0.3458 REMARK 3 S21: 0.3817 S22: -0.0685 S23: -0.5096 REMARK 3 S31: -0.3462 S32: 0.3716 S33: 0.1049 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 29 A 42 REMARK 3 ORIGIN FOR THE GROUP (A): 13.8860 10.6130 0.8950 REMARK 3 T TENSOR REMARK 3 T11: -0.1016 T22: 0.0074 REMARK 3 T33: 0.0785 T12: -0.0878 REMARK 3 T13: 0.0182 T23: -0.0174 REMARK 3 L TENSOR REMARK 3 L11: 6.0055 L22: 8.8990 REMARK 3 L33: 5.4361 L12: -0.1688 REMARK 3 L13: -0.3037 L23: -0.9226 REMARK 3 S TENSOR REMARK 3 S11: 0.0356 S12: -0.0266 S13: 0.2326 REMARK 3 S21: -0.2976 S22: -0.0170 S23: -0.7513 REMARK 3 S31: -0.3772 S32: 0.7275 S33: -0.0186 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 43 A 59 REMARK 3 ORIGIN FOR THE GROUP (A): 0.2270 10.1860 7.5480 REMARK 3 T TENSOR REMARK 3 T11: -0.0101 T22: -0.0300 REMARK 3 T33: 0.0246 T12: -0.0072 REMARK 3 T13: -0.0432 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 8.4047 L22: 9.1867 REMARK 3 L33: 4.9928 L12: -5.3761 REMARK 3 L13: -5.0376 L23: 1.6567 REMARK 3 S TENSOR REMARK 3 S11: -0.0242 S12: 0.0562 S13: 0.2232 REMARK 3 S21: 0.2615 S22: 0.0566 S23: 0.0968 REMARK 3 S31: -0.2630 S32: -0.0888 S33: -0.0324 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 8 REMARK 3 ORIGIN FOR THE GROUP (A): -0.4500 -0.1500 11.8350 REMARK 3 T TENSOR REMARK 3 T11: -0.1140 T22: -0.1322 REMARK 3 T33: -0.1483 T12: 0.0137 REMARK 3 T13: -0.0133 T23: 0.0294 REMARK 3 L TENSOR REMARK 3 L11: 6.2476 L22: 3.0508 REMARK 3 L33: 9.0442 L12: -1.5436 REMARK 3 L13: -0.2046 L23: -1.8263 REMARK 3 S TENSOR REMARK 3 S11: -0.1101 S12: -0.3430 S13: 0.0079 REMARK 3 S21: 0.4566 S22: 0.2212 S23: -0.0529 REMARK 3 S31: -0.0607 S32: -0.1377 S33: -0.1110 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 8 C 14 REMARK 3 ORIGIN FOR THE GROUP (A): -5.1750 -1.4350 9.7860 REMARK 3 T TENSOR REMARK 3 T11: -0.1246 T22: -0.1385 REMARK 3 T33: -0.1664 T12: -0.0530 REMARK 3 T13: 0.0053 T23: -0.0415 REMARK 3 L TENSOR REMARK 3 L11: 9.3775 L22: 7.0062 REMARK 3 L33: 5.8945 L12: -3.9516 REMARK 3 L13: 3.1587 L23: -3.3207 REMARK 3 S TENSOR REMARK 3 S11: -0.0072 S12: -0.3744 S13: -0.3945 REMARK 3 S21: 0.4223 S22: 0.1504 S23: 0.4029 REMARK 3 S31: 0.4222 S32: -0.5722 S33: -0.1432 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3CMY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000046969. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JAN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9726 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 27.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.58400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: IFJL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19-22% POLYETHYLENE GLYCOL 8000, 100 REMARK 280 MM AMMONIUM SULPHATE, 20MM MAGNESIUM CHLORIDE, 15% 2-METHYL-2,4- REMARK 280 PENTANEDIOL, 50 MM 4-(2-HYDROXYETHYL)-1-PIPERAZINEETHANESULFONIC REMARK 280 ACID, PH 7.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.27800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.27800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 21.66250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.12150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 21.66250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.12150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 46.27800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 21.66250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 31.12150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 46.27800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 21.66250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 31.12150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THE DNA CAN PACK IN TWO ORIENTATIONS WHICH ARE NEARLY EQUIVALENT. REMARK 400 ONLY 1/2 OF THE CRYSTALLIZED SEQUENCE IS PRESENT IN THE REMARK 400 COORDINATES. THE SECOND PART IS RELATED BY CRYSTAL SYMMETRY. THERE REMARK 400 IS MIXED ELECTRON DENSITY OUTSIDE THE PALINDROMIC REGION BECAUSE REMARK 400 THE TWOFOLD CRYSTALLOGRAPHIC AXIS COINCIDES WITH THE PSEUDO-TWOFOLD REMARK 400 AXIS OF THE DNA. THE ENTRY IS PROCESSED AS 2 MODELS CORRESPONDING REMARK 400 TO THE 2 ORIENTATIONS OF THE DNA MOLECULE. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 1 ALA A 60 REMARK 465 1 DG B 9 REMARK 465 1 DA B 10 REMARK 465 1 DT B 11 REMARK 465 1 DT B 12 REMARK 465 1 DA B 13 REMARK 465 1 DC B 14 REMARK 465 1 DT C 1 REMARK 465 1 DG C 2 REMARK 465 1 DT C 3 REMARK 465 1 DA C 4 REMARK 465 1 DA C 5 REMARK 465 1 DT C 6 REMARK 465 1 DC C 7 REMARK 465 2 ALA A 60 REMARK 465 2 DA B 1 REMARK 465 2 DC B 2 REMARK 465 2 DA B 3 REMARK 465 2 DT B 4 REMARK 465 2 DA B 5 REMARK 465 2 DA B 6 REMARK 465 2 DT B 7 REMARK 465 2 DC B 8 REMARK 465 2 DG C 8 REMARK 465 2 DA C 9 REMARK 465 2 DT C 10 REMARK 465 2 DT C 11 REMARK 465 2 DA C 12 REMARK 465 2 DT C 13 REMARK 465 2 DG C 14 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 1 LYS A 58 CG CD CE NZ REMARK 470 2 LYS A 58 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 DA B 3 O3' DA B 3 C3' -0.040 REMARK 500 1 DC B 8 O3' DC B 8 C3' -0.043 REMARK 500 2 DC C 7 O3' DC C 7 C3' -0.043 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 DA B 1 O4' - C4' - C3' ANGL. DEV. = -3.7 DEGREES REMARK 500 1 DC B 2 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 1 DT B 4 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 1 DC B 8 C3' - C2' - C1' ANGL. DEV. = -5.2 DEGREES REMARK 500 2 DT C 1 O4' - C4' - C3' ANGL. DEV. = -2.5 DEGREES REMARK 500 2 DT C 1 C4' - C3' - C2' ANGL. DEV. = -4.4 DEGREES REMARK 500 2 DT C 3 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 2 DC C 7 C3' - C2' - C1' ANGL. DEV. = -5.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 61 DBREF 3CMY A 1 60 UNP P23760 PAX3_HUMAN 219 278 DBREF 3CMY B 1 14 PDB 3CMY 3CMY 1 14 DBREF 3CMY C 1 14 PDB 3CMY 3CMY 1 14 SEQADV 3CMY GLY A 0 UNP P23760 EXPRESSION TAG SEQRES 1 A 61 GLY GLN ARG ARG SER ARG THR THR PHE THR ALA GLU GLN SEQRES 2 A 61 LEU GLU GLU LEU GLU ARG ALA PHE GLU ARG THR HIS TYR SEQRES 3 A 61 PRO ASP ILE TYR THR ARG GLU GLU LEU ALA GLN ARG ALA SEQRES 4 A 61 LYS LEU THR GLU ALA ARG VAL GLN VAL TRP PHE SER ASN SEQRES 5 A 61 ARG ARG ALA ARG TRP ARG LYS GLN ALA SEQRES 1 B 14 DA DC DA DT DA DA DT DC DG DA DT DT DA SEQRES 2 B 14 DC SEQRES 1 C 14 DT DG DT DA DA DT DC DG DA DT DT DA DT SEQRES 2 C 14 DG HET EDO A 61 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 4 EDO C2 H6 O2 FORMUL 5 HOH *84(H2 O) HELIX 1 1 THR A 9 THR A 23 1 15 HELIX 2 2 ASP A 27 LYS A 39 1 13 HELIX 3 3 THR A 41 GLN A 59 1 19 SITE 1 AC1 1 SER A 4 CRYST1 43.325 62.243 92.556 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023081 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016066 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010804 0.00000