PDB Short entry for 3CW8 HEADER LIGASE 21-APR-08 3CW8 TITLE 4-CHLOROBENZOYL-COA LIGASE/SYNTHETASE, BOUND TO 4CBA-ADENYLATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4-CHLOROBENZOYL COA LIGASE; COMPND 3 CHAIN: X; COMPND 4 SYNONYM: CHLOROBENZOATE COA LIGASE/SYNTHETASE; COMPND 5 EC: 6.2.1.33; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ALCALIGENES SP.; SOURCE 3 STRAIN: AL3007; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PQE-70 KEYWDS ADENYLATE-FORMING ENZYMES, ACYL-COA LIGASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR A.S.REGER,J.CAO,R.WU,D.DUNAWAY-MARIANO,A.M.GULICK REVDAT 5 30-AUG-23 3CW8 1 REMARK REVDAT 4 25-OCT-17 3CW8 1 REMARK REVDAT 3 13-JUL-11 3CW8 1 VERSN REVDAT 2 24-FEB-09 3CW8 1 VERSN REVDAT 1 02-SEP-08 3CW8 0 JRNL AUTH A.S.REGER,R.WU,D.DUNAWAY-MARIANO,A.M.GULICK JRNL TITL STRUCTURAL CHARACTERIZATION OF A 140 DEGREES DOMAIN MOVEMENT JRNL TITL 2 IN THE TWO-STEP REACTION CATALYZED BY 4-CHLOROBENZOATE:COA JRNL TITL 3 LIGASE. JRNL REF BIOCHEMISTRY V. 47 8016 2008 JRNL REFN ISSN 0006-2960 JRNL PMID 18620418 JRNL DOI 10.1021/BI800696Y REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.WU,J.CAO,X.LU,A.S.REGER,A.M.GULICK,D.DUNAWAY-MARIANO REMARK 1 TITL MECHANISM OF 4-CHLOROBENZOATE: COENZYME A LIGASE CATALYSIS REMARK 1 REF TO BE PUBLISHED 2008 REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 30548 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1608 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1904 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 96 REMARK 3 BIN FREE R VALUE : 0.3120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3723 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 135 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 60.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.32000 REMARK 3 B22 (A**2) : 0.32000 REMARK 3 B33 (A**2) : -0.48000 REMARK 3 B12 (A**2) : 0.16000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.232 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.213 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.160 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.005 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3849 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5246 ; 1.448 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 501 ; 6.266 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 156 ;33.385 ;22.949 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 584 ;15.154 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;20.213 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 618 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2923 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1740 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2614 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 208 ; 0.136 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 54 ; 0.216 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.187 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2556 ; 0.707 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3994 ; 1.207 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1446 ; 1.937 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1251 ; 3.022 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 1 X 203 REMARK 3 ORIGIN FOR THE GROUP (A): 2.3403 43.6231 7.4905 REMARK 3 T TENSOR REMARK 3 T11: -0.2538 T22: 0.1361 REMARK 3 T33: -0.0209 T12: 0.0177 REMARK 3 T13: -0.0705 T23: 0.0866 REMARK 3 L TENSOR REMARK 3 L11: 2.8211 L22: 2.3010 REMARK 3 L33: 2.0702 L12: -1.0174 REMARK 3 L13: -0.1176 L23: -0.0597 REMARK 3 S TENSOR REMARK 3 S11: -0.0315 S12: -0.6968 S13: -0.2907 REMARK 3 S21: -0.0511 S22: 0.1721 S23: 0.6290 REMARK 3 S31: 0.0349 S32: -0.5915 S33: -0.1406 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 231 X 301 REMARK 3 ORIGIN FOR THE GROUP (A): 16.2815 64.3641 -2.6276 REMARK 3 T TENSOR REMARK 3 T11: -0.0531 T22: -0.2621 REMARK 3 T33: -0.0211 T12: 0.0873 REMARK 3 T13: -0.0722 T23: -0.0630 REMARK 3 L TENSOR REMARK 3 L11: 2.2903 L22: 7.1498 REMARK 3 L33: 6.3459 L12: -0.7243 REMARK 3 L13: -0.9530 L23: 0.3640 REMARK 3 S TENSOR REMARK 3 S11: 0.0588 S12: -0.2413 S13: 0.5135 REMARK 3 S21: -0.4849 S22: -0.1067 S23: -0.2285 REMARK 3 S31: -0.7771 S32: -0.2929 S33: 0.0480 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 302 X 477 REMARK 3 ORIGIN FOR THE GROUP (A): 8.4782 51.0446 -23.4619 REMARK 3 T TENSOR REMARK 3 T11: 0.1936 T22: -0.0418 REMARK 3 T33: -0.1357 T12: 0.1784 REMARK 3 T13: -0.1648 T23: -0.0223 REMARK 3 L TENSOR REMARK 3 L11: 0.9960 L22: 2.8690 REMARK 3 L33: 1.0802 L12: -1.4872 REMARK 3 L13: 0.9847 L23: -1.7333 REMARK 3 S TENSOR REMARK 3 S11: 0.5507 S12: 0.3400 S13: -0.1123 REMARK 3 S21: -0.8383 S22: -0.3867 S23: 0.1852 REMARK 3 S31: 0.5025 S32: 0.2699 S33: -0.1641 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 478 X 502 REMARK 3 ORIGIN FOR THE GROUP (A): -7.5074 60.8388 -22.4905 REMARK 3 T TENSOR REMARK 3 T11: -0.0536 T22: -0.2092 REMARK 3 T33: 0.0371 T12: -0.0965 REMARK 3 T13: -0.1867 T23: 0.0937 REMARK 3 L TENSOR REMARK 3 L11: 9.3857 L22: 5.5967 REMARK 3 L33: 18.9581 L12: 0.5455 REMARK 3 L13: -7.4564 L23: -8.9503 REMARK 3 S TENSOR REMARK 3 S11: 0.0215 S12: -0.2546 S13: -0.9751 REMARK 3 S21: -0.2718 S22: 0.4963 S23: 0.8626 REMARK 3 S31: 0.8442 S32: -0.7977 S33: -0.5178 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 909 X 909 REMARK 3 ORIGIN FOR THE GROUP (A): 8.6112 49.5513 -12.1254 REMARK 3 T TENSOR REMARK 3 T11: -0.0194 T22: 0.0073 REMARK 3 T33: -0.0128 T12: 0.0490 REMARK 3 T13: -0.0689 T23: -0.0212 REMARK 3 L TENSOR REMARK 3 L11: 102.3778 L22: 23.4381 REMARK 3 L33: 83.4270 L12: 20.1529 REMARK 3 L13: 12.9370 L23: 42.4537 REMARK 3 S TENSOR REMARK 3 S11: 2.0440 S12: -0.3962 S13: 0.1844 REMARK 3 S21: 1.8743 S22: 0.3138 S23: 0.9513 REMARK 3 S31: 1.9244 S32: -3.6444 S33: -2.3578 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3CW8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-APR-08. REMARK 100 THE DEPOSITION ID IS D_1000047287. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-05 REMARK 200 TEMPERATURE (KELVIN) : 113 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97944 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30548 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.48000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1T5D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16-24% PENTAERYTHRITOL PROPOXYLATE REMARK 280 426, .1 M K+HEPES, 1 MM ATP, 1 MM 4CBA, PH 6.5-6.75, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.21200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 24.10600 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 24.10600 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 48.21200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG X 439 REMARK 465 SER X 503 REMARK 465 SER X 504 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU X 51 CG CD1 CD2 REMARK 470 LYS X 98 CD CE NZ REMARK 470 ARG X 111 CG CD NE CZ NH1 NH2 REMARK 470 GLN X 112 CG CD OE1 NE2 REMARK 470 ILE X 117 CG1 CG2 CD1 REMARK 470 PHE X 118 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN X 119 CG CD OE1 NE2 REMARK 470 TYR X 139 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 THR X 164 OG1 CG2 REMARK 470 THR X 165 OG1 CG2 REMARK 470 LYS X 270 CG CD CE NZ REMARK 470 LYS X 319 CE NZ REMARK 470 GLU X 370 CG CD OE1 OE2 REMARK 470 ILE X 406 CG1 CG2 CD1 REMARK 470 GLN X 438 CG CD OE1 NE2 REMARK 470 GLU X 469 CG CD OE1 OE2 REMARK 470 GLN X 484 CG CD OE1 NE2 REMARK 470 LYS X 492 CG CD CE NZ REMARK 470 ARG X 496 CG CD NE CZ NH1 NH2 REMARK 470 GLN X 500 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY X 408 O HOH X 1087 1.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP X 115 CG ASP X 115 OD1 0.148 REMARK 500 ASP X 115 CG ASP X 115 OD2 0.217 REMARK 500 GLN X 438 C GLN X 438 O 0.150 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN X 54 -4.79 65.93 REMARK 500 PRO X 143 153.27 -44.73 REMARK 500 THR X 164 78.67 -61.63 REMARK 500 THR X 165 105.88 68.46 REMARK 500 MET X 310 -127.37 59.70 REMARK 500 GLN X 317 62.74 35.11 REMARK 500 PHE X 329 -20.02 78.64 REMARK 500 SER X 358 -140.75 -118.85 REMARK 500 ASN X 491 58.91 31.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY X 142 PRO X 143 -147.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 00A X 909 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO X 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO X 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO X 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO X 804 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1T5D RELATED DB: PDB REMARK 900 RELATED ID: 1PG4 RELATED DB: PDB REMARK 900 RELATED ID: 3CW9 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE IN THIS ENTRY CORRESPONDS TO THE SEQUENCE FROM GB REMARK 999 ENTRY AAN10109. DBREF 3CW8 X 1 504 PDB 3CW8 3CW8 1 504 SEQRES 1 X 504 MET GLN THR VAL ASN GLU MET LEU ARG ARG ALA ALA THR SEQRES 2 X 504 ARG ALA PRO ASP HIS CYS ALA LEU ALA VAL PRO ALA ARG SEQRES 3 X 504 GLY LEU ARG LEU THR HIS ALA GLU LEU ARG ALA ARG VAL SEQRES 4 X 504 GLU ALA VAL ALA ALA ARG LEU HIS ALA ASP GLY LEU ARG SEQRES 5 X 504 PRO GLN GLN ARG VAL ALA VAL VAL ALA PRO ASN SER ALA SEQRES 6 X 504 ASP VAL VAL ILE ALA ILE LEU ALA LEU HIS ARG LEU GLY SEQRES 7 X 504 ALA VAL PRO ALA LEU LEU ASN PRO ARG LEU LYS SER ALA SEQRES 8 X 504 GLU LEU ALA GLU LEU ILE LYS ARG GLY GLU MET THR ALA SEQRES 9 X 504 ALA VAL ILE ALA VAL GLY ARG GLN VAL ALA ASP ALA ILE SEQRES 10 X 504 PHE GLN SER GLY SER GLY ALA ARG ILE ILE PHE LEU GLY SEQRES 11 X 504 ASP LEU VAL ARG ASP GLY GLU PRO TYR SER TYR GLY PRO SEQRES 12 X 504 PRO ILE GLU ASP PRO GLN ARG GLU PRO ALA GLN PRO ALA SEQRES 13 X 504 PHE ILE PHE TYR THR SER GLY THR THR GLY LEU PRO LYS SEQRES 14 X 504 ALA ALA ILE ILE PRO GLN ARG ALA ALA GLU SER ARG VAL SEQRES 15 X 504 LEU PHE MET SER THR GLN VAL GLY LEU ARG HIS GLY ARG SEQRES 16 X 504 HIS ASN VAL VAL LEU GLY LEU MET PRO LEU TYR HIS VAL SEQRES 17 X 504 VAL GLY PHE PHE ALA VAL LEU VAL ALA ALA LEU ALA LEU SEQRES 18 X 504 ASP GLY THR TYR VAL VAL ILE GLU GLU PHE ARG PRO VAL SEQRES 19 X 504 ASP ALA LEU GLN LEU VAL GLN GLN GLU GLN VAL THR SER SEQRES 20 X 504 LEU PHE ALA THR PRO THR HIS LEU ASP ALA LEU ALA ALA SEQRES 21 X 504 ALA ALA ALA HIS ALA GLY SER SER LEU LYS LEU ASP SER SEQRES 22 X 504 LEU ARG HIS VAL THR PHE ALA GLY ALA THR MET PRO ASP SEQRES 23 X 504 ALA VAL LEU GLU THR VAL HIS GLN HIS LEU PRO GLY GLU SEQRES 24 X 504 LYS VAL ASN ILE TYR GLY THR THR GLU ALA MET ASN SER SEQRES 25 X 504 LEU TYR MET ARG GLN PRO LYS THR GLY THR GLU MET ALA SEQRES 26 X 504 PRO GLY PHE PHE SER GLU VAL ARG ILE VAL ARG ILE GLY SEQRES 27 X 504 GLY GLY VAL ASP GLU ILE VAL ALA ASN GLY GLU GLU GLY SEQRES 28 X 504 GLU LEU ILE VAL ALA ALA SER ASP SER ALA PHE VAL GLY SEQRES 29 X 504 TYR LEU ASN GLN PRO GLU ALA THR ALA GLU LYS LEU GLN SEQRES 30 X 504 ASP GLY TRP TYR ARG THR SER ASP VAL ALA VAL TRP THR SEQRES 31 X 504 PRO GLU GLY THR VAL ARG ILE LEU GLY ARG VAL ASP ASP SEQRES 32 X 504 MET ILE ILE SER GLY GLY GLU ASN ILE HIS PRO SER GLU SEQRES 33 X 504 ILE GLU ARG VAL LEU GLY THR ALA PRO GLY VAL THR GLU SEQRES 34 X 504 VAL VAL VAL ILE GLY LEU ALA ASP GLN ARG TRP GLY GLN SEQRES 35 X 504 SER VAL THR ALA CYS VAL VAL PRO ARG LEU GLY GLU THR SEQRES 36 X 504 LEU SER ALA ASP ALA LEU ASP THR PHE CYS ARG SER SER SEQRES 37 X 504 GLU LEU ALA ASP PHE LYS ARG PRO LYS ARG TYR PHE ILE SEQRES 38 X 504 LEU ASP GLN LEU PRO LYS ASN ALA LEU ASN LYS VAL LEU SEQRES 39 X 504 ARG ARG GLN LEU VAL GLN GLN VAL SER SER HET 00A X 909 32 HET EDO X 801 4 HET EDO X 802 4 HET EDO X 803 4 HET EDO X 804 4 HETNAM 00A 5'-O-[(S)-{[(4-CHLOROPHENYL)CARBONYL]OXY}(HYDROXY) HETNAM 2 00A PHOSPHORYL]ADENOSINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 00A C17 H17 CL N5 O8 P FORMUL 3 EDO 4(C2 H6 O2) FORMUL 7 HOH *135(H2 O) HELIX 1 1 THR X 3 ALA X 15 1 13 HELIX 2 2 PRO X 24 GLY X 27 5 4 HELIX 3 3 HIS X 32 ASP X 49 1 18 HELIX 4 4 SER X 64 GLY X 78 1 15 HELIX 5 5 LYS X 89 GLY X 100 1 12 HELIX 6 6 GLY X 110 GLN X 119 1 10 HELIX 7 7 LEU X 129 LEU X 132 1 4 HELIX 8 8 ALA X 177 GLN X 188 1 12 HELIX 9 9 HIS X 207 PHE X 212 1 6 HELIX 10 10 VAL X 214 LEU X 221 1 8 HELIX 11 11 ARG X 232 GLN X 244 1 13 HELIX 12 12 THR X 251 GLY X 266 1 16 HELIX 13 13 SER X 267 LEU X 269 5 3 HELIX 14 14 PRO X 285 LEU X 296 1 12 HELIX 15 15 GLN X 368 LYS X 375 1 8 HELIX 16 16 HIS X 413 THR X 423 1 11 HELIX 17 17 SER X 457 SER X 468 1 12 HELIX 18 18 ALA X 471 ARG X 475 5 5 HELIX 19 19 LEU X 494 VAL X 502 1 9 SHEET 1 A 8 LEU X 28 THR X 31 0 SHEET 2 A 8 CYS X 19 VAL X 23 -1 N ALA X 20 O LEU X 30 SHEET 3 A 8 THR X 224 VAL X 227 1 O TYR X 225 N ALA X 20 SHEET 4 A 8 VAL X 198 GLY X 201 1 N VAL X 199 O VAL X 226 SHEET 5 A 8 SER X 247 ALA X 250 1 O SER X 247 N LEU X 200 SHEET 6 A 8 HIS X 276 ALA X 280 1 O THR X 278 N LEU X 248 SHEET 7 A 8 GLU X 299 THR X 306 1 O GLU X 299 N VAL X 277 SHEET 8 A 8 MET X 310 ARG X 316 -1 O LEU X 313 N TYR X 304 SHEET 1 B 6 ARG X 125 PHE X 128 0 SHEET 2 B 6 ALA X 104 ILE X 107 1 N ALA X 105 O ILE X 127 SHEET 3 B 6 ARG X 56 VAL X 60 1 N ALA X 58 O VAL X 106 SHEET 4 B 6 VAL X 80 LEU X 83 1 O ALA X 82 N VAL X 57 SHEET 5 B 6 PRO X 155 THR X 161 1 O ILE X 158 N PRO X 81 SHEET 6 B 6 LYS X 169 PRO X 174 -1 O ILE X 173 N PHE X 157 SHEET 1 C 2 VAL X 133 ARG X 134 0 SHEET 2 C 2 GLU X 137 PRO X 138 -1 O GLU X 137 N ARG X 134 SHEET 1 D 5 GLU X 323 MET X 324 0 SHEET 2 D 5 VAL X 395 ARG X 400 -1 O VAL X 395 N MET X 324 SHEET 3 D 5 TRP X 380 TRP X 389 -1 N VAL X 386 O GLY X 399 SHEET 4 D 5 GLY X 351 ALA X 356 -1 N VAL X 355 O TYR X 381 SHEET 5 D 5 VAL X 332 VAL X 335 -1 N VAL X 335 O GLU X 352 SHEET 1 E 4 GLU X 323 MET X 324 0 SHEET 2 E 4 VAL X 395 ARG X 400 -1 O VAL X 395 N MET X 324 SHEET 3 E 4 TRP X 380 TRP X 389 -1 N VAL X 386 O GLY X 399 SHEET 4 E 4 LEU X 376 GLN X 377 -1 N GLN X 377 O TRP X 380 SHEET 1 F 2 ILE X 405 SER X 407 0 SHEET 2 F 2 GLU X 410 ILE X 412 -1 O ILE X 412 N ILE X 405 SHEET 1 G 3 VAL X 427 ASP X 437 0 SHEET 2 G 3 GLY X 441 PRO X 450 -1 O THR X 445 N ILE X 433 SHEET 3 G 3 ARG X 478 ILE X 481 1 O PHE X 480 N VAL X 448 CISPEP 1 PRO X 143 PRO X 144 0 -15.67 CISPEP 2 GLY X 166 LEU X 167 0 6.50 SITE 1 AC1 18 THR X 161 HIS X 207 GLY X 281 ALA X 282 SITE 2 AC1 18 THR X 283 ASN X 302 ILE X 303 TYR X 304 SITE 3 AC1 18 GLY X 305 THR X 306 THR X 307 MET X 310 SITE 4 AC1 18 ASN X 311 MET X 324 ASP X 385 ARG X 400 SITE 5 AC1 18 HOH X1120 HOH X1127 SITE 1 AC2 2 ARG X 14 HOH X1118 SITE 1 AC3 2 ARG X 150 HOH X1050 SITE 1 AC4 4 LEU X 8 HIS X 32 ARG X 36 HOH X1059 SITE 1 AC5 4 TYR X 314 MET X 315 ARG X 316 ALA X 325 CRYST1 128.583 128.583 72.318 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007777 0.004490 0.000000 0.00000 SCALE2 0.000000 0.008980 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013828 0.00000