PDB Short entry for 3D0Y HEADER METAL BINDING PROTEIN 02-MAY-08 3D0Y TITLE CRYSTAL STRUCTURE OF S100B IN THE CALCIUM AND ZINC LOADED STATE AT PH TITLE 2 6.5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN S100-B; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: S100 CALCIUM-BINDING PROTEIN B, S-100 PROTEIN SUBUNIT BETA, COMPND 5 S-100 PROTEIN BETA CHAIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PROTEIN S100-B; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: S100 CALCIUM-BINDING PROTEIN B, S-100 PROTEIN SUBUNIT BETA, COMPND 11 S-100 PROTEIN BETA CHAIN; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 GENE: S100B; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEMEX-2; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 GENE: S100B; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PGEMEX-2 KEYWDS S100B, S100, EF-HAND, METAL-BINDING, NUCLEUS, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.OSTENDORP,J.DIEZ,C.W.HEIZMANN,G.FRITZ REVDAT 5 30-AUG-23 3D0Y 1 REMARK LINK REVDAT 4 13-JUL-11 3D0Y 1 VERSN REVDAT 3 04-MAY-11 3D0Y 1 JRNL REVDAT 2 24-NOV-10 3D0Y 1 JRNL REVDAT 1 14-APR-09 3D0Y 0 JRNL AUTH T.OSTENDORP,J.DIEZ,C.W.HEIZMANN,G.FRITZ JRNL TITL THE CRYSTAL STRUCTURES OF HUMAN S100B IN THE ZINC- AND JRNL TITL 2 CALCIUM-LOADED STATE AT THREE PH VALUES REVEAL ZINC LIGAND JRNL TITL 3 SWAPPING. JRNL REF BIOCHIM.BIOPHYS.ACTA V.1813 1083 2011 JRNL REFN ISSN 0006-3002 JRNL PMID 20950652 JRNL DOI 10.1016/J.BBAMCR.2010.10.006 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 13.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 26319 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1386 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1730 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE SET COUNT : 91 REMARK 3 BIN FREE R VALUE : 0.4080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1440 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 181 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.08000 REMARK 3 B22 (A**2) : 1.19000 REMARK 3 B33 (A**2) : -1.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.07000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.092 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.100 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.092 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.894 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1520 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2038 ; 1.525 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 187 ; 5.061 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 82 ;33.186 ;26.585 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 285 ;14.792 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ;19.927 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 221 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1144 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 909 ; 0.224 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1077 ; 0.311 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 147 ; 0.203 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 22 ; 0.274 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 39 ; 0.211 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.180 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 945 ; 1.019 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1477 ; 1.370 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 625 ; 2.528 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 560 ; 3.600 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 16 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0393 3.2703 2.0855 REMARK 3 T TENSOR REMARK 3 T11: 0.0993 T22: 0.0953 REMARK 3 T33: 0.1580 T12: 0.0416 REMARK 3 T13: 0.0078 T23: -0.0111 REMARK 3 L TENSOR REMARK 3 L11: 3.3111 L22: 0.9579 REMARK 3 L33: 11.5485 L12: 0.0344 REMARK 3 L13: 3.5013 L23: 1.2557 REMARK 3 S TENSOR REMARK 3 S11: -0.0846 S12: -0.2750 S13: 0.1852 REMARK 3 S21: 0.0812 S22: -0.0344 S23: 0.1814 REMARK 3 S31: -0.0867 S32: -0.5080 S33: 0.1190 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 17 A 46 REMARK 3 ORIGIN FOR THE GROUP (A): 5.4437 -0.4014 16.6102 REMARK 3 T TENSOR REMARK 3 T11: 0.0670 T22: 0.2508 REMARK 3 T33: 0.0512 T12: 0.0223 REMARK 3 T13: 0.0203 T23: -0.0364 REMARK 3 L TENSOR REMARK 3 L11: 3.6131 L22: 3.6618 REMARK 3 L33: 4.6914 L12: 1.1829 REMARK 3 L13: -0.2260 L23: -0.6479 REMARK 3 S TENSOR REMARK 3 S11: -0.0370 S12: -0.6369 S13: 0.1116 REMARK 3 S21: 0.2828 S22: 0.0183 S23: 0.0562 REMARK 3 S31: -0.0731 S32: -0.2978 S33: 0.0187 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 47 A 66 REMARK 3 ORIGIN FOR THE GROUP (A): 15.6917 -3.7007 18.5585 REMARK 3 T TENSOR REMARK 3 T11: 0.0540 T22: 0.2161 REMARK 3 T33: 0.0960 T12: 0.0024 REMARK 3 T13: -0.0219 T23: -0.0655 REMARK 3 L TENSOR REMARK 3 L11: 3.3612 L22: 8.8845 REMARK 3 L33: 7.7959 L12: 2.4950 REMARK 3 L13: -0.7282 L23: -4.8172 REMARK 3 S TENSOR REMARK 3 S11: 0.1153 S12: 0.0051 S13: -0.0537 REMARK 3 S21: 0.0622 S22: -0.0810 S23: 0.0438 REMARK 3 S31: 0.0597 S32: 0.4200 S33: -0.0343 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 67 A 89 REMARK 3 ORIGIN FOR THE GROUP (A): 10.4188 -6.0347 5.7690 REMARK 3 T TENSOR REMARK 3 T11: 0.0898 T22: 0.1009 REMARK 3 T33: 0.1790 T12: 0.0006 REMARK 3 T13: -0.0120 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 1.6371 L22: 9.0585 REMARK 3 L33: 3.8687 L12: 1.9293 REMARK 3 L13: 0.3148 L23: 3.5103 REMARK 3 S TENSOR REMARK 3 S11: 0.0626 S12: -0.2704 S13: -0.2452 REMARK 3 S21: -0.0018 S22: -0.0801 S23: 0.0093 REMARK 3 S31: -0.0235 S32: -0.0384 S33: 0.0175 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 16 REMARK 3 ORIGIN FOR THE GROUP (A): 0.4826 -7.5449 -0.5325 REMARK 3 T TENSOR REMARK 3 T11: 0.1290 T22: 0.0590 REMARK 3 T33: 0.1684 T12: -0.0433 REMARK 3 T13: -0.0203 T23: 0.0181 REMARK 3 L TENSOR REMARK 3 L11: 3.6412 L22: 2.2662 REMARK 3 L33: 15.0179 L12: 0.8286 REMARK 3 L13: -1.1020 L23: 1.9993 REMARK 3 S TENSOR REMARK 3 S11: 0.1495 S12: -0.1957 S13: -0.1506 REMARK 3 S21: -0.1309 S22: -0.1465 S23: 0.1369 REMARK 3 S31: 0.5380 S32: -0.8866 S33: -0.0030 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 17 B 44 REMARK 3 ORIGIN FOR THE GROUP (A): 5.2894 -4.5705 -14.5991 REMARK 3 T TENSOR REMARK 3 T11: 0.1253 T22: 0.0948 REMARK 3 T33: 0.1127 T12: 0.0286 REMARK 3 T13: 0.0002 T23: -0.0325 REMARK 3 L TENSOR REMARK 3 L11: 4.1942 L22: 5.7984 REMARK 3 L33: 5.0776 L12: -1.6598 REMARK 3 L13: -0.4631 L23: 1.1113 REMARK 3 S TENSOR REMARK 3 S11: 0.0171 S12: 0.3399 S13: -0.3326 REMARK 3 S21: -0.2837 S22: -0.0820 S23: 0.1228 REMARK 3 S31: 0.4021 S32: 0.1021 S33: 0.0650 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 45 B 66 REMARK 3 ORIGIN FOR THE GROUP (A): 14.1594 1.0395 -17.0830 REMARK 3 T TENSOR REMARK 3 T11: 0.0663 T22: 0.2443 REMARK 3 T33: 0.0728 T12: -0.0104 REMARK 3 T13: 0.0255 T23: -0.0285 REMARK 3 L TENSOR REMARK 3 L11: 4.3408 L22: 4.4106 REMARK 3 L33: 5.8613 L12: -1.9031 REMARK 3 L13: -0.6397 L23: 0.4004 REMARK 3 S TENSOR REMARK 3 S11: -0.0123 S12: 0.1316 S13: 0.1811 REMARK 3 S21: -0.1278 S22: 0.0662 S23: -0.3050 REMARK 3 S31: -0.1887 S32: 0.8341 S33: -0.0539 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 67 B 89 REMARK 3 ORIGIN FOR THE GROUP (A): 9.5784 2.7566 -3.4377 REMARK 3 T TENSOR REMARK 3 T11: 0.0899 T22: 0.0853 REMARK 3 T33: 0.1509 T12: -0.0096 REMARK 3 T13: 0.0047 T23: 0.0159 REMARK 3 L TENSOR REMARK 3 L11: 5.1070 L22: 16.1386 REMARK 3 L33: 10.1215 L12: -4.5099 REMARK 3 L13: -1.0983 L23: 9.4978 REMARK 3 S TENSOR REMARK 3 S11: 0.1239 S12: 0.0211 S13: 0.2909 REMARK 3 S21: 0.0229 S22: -0.2395 S23: -0.2043 REMARK 3 S31: -0.1485 S32: 0.0905 S33: 0.1157 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3D0Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1000047453. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27707 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 13.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.5400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.51700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2H61 CHAIN A AND B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.5 21% PEG5000MME, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.07500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -163.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 90 REMARK 465 GLU A 91 REMARK 465 HIS B 90 REMARK 465 GLU B 91 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 24 CG CD CE NZ REMARK 470 LYS A 28 CG CD CE NZ REMARK 470 GLU A 45 CG CD OE1 OE2 REMARK 470 LYS A 55 CG CD CE NZ REMARK 470 LYS B 24 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CA CA B 93 O HOH B 141 1.41 REMARK 500 OD2 ASP A 12 O HOH A 162 2.18 REMARK 500 O HOH A 140 O HOH B 179 2.18 REMARK 500 OE2 GLU B 89 O HOH B 136 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 74 CG - SD - CE ANGL. DEV. = 10.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 94 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 15 NE2 REMARK 620 2 HIS A 25 NE2 125.0 REMARK 620 3 HIS B 85 NE2 106.1 97.1 REMARK 620 4 GLU B 89 OE1 99.4 124.5 100.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 93 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 18 O REMARK 620 2 GLU A 21 O 100.8 REMARK 620 3 ASP A 23 O 76.9 86.6 REMARK 620 4 LYS A 26 O 88.0 162.3 80.3 REMARK 620 5 GLU A 31 OE1 104.2 116.0 156.2 75.9 REMARK 620 6 GLU A 31 OE2 80.5 74.6 147.3 122.4 53.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 92 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 61 OD1 REMARK 620 2 ASP A 63 OD2 82.6 REMARK 620 3 ASP A 65 OD1 87.8 82.2 REMARK 620 4 GLU A 67 O 89.6 161.1 80.3 REMARK 620 5 GLU A 72 OE1 116.2 122.2 146.2 76.7 REMARK 620 6 GLU A 72 OE2 87.3 79.1 161.1 117.9 50.6 REMARK 620 7 HOH A 96 O 162.4 84.1 79.0 99.4 80.7 101.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 95 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 85 NE2 REMARK 620 2 GLU A 89 OE1 99.1 REMARK 620 3 HIS B 15 NE2 110.5 84.9 REMARK 620 4 HIS B 25 NE2 107.7 118.1 130.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 92 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 18 O REMARK 620 2 GLU B 21 O 101.7 REMARK 620 3 ASP B 23 O 76.0 83.7 REMARK 620 4 LYS B 26 O 85.4 159.5 79.5 REMARK 620 5 GLU B 31 OE1 102.7 118.9 156.7 77.3 REMARK 620 6 GLU B 31 OE2 80.8 75.0 144.4 125.4 55.3 REMARK 620 7 HOH B 95 O 163.7 83.3 89.3 85.0 88.0 115.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 93 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 61 OD1 REMARK 620 2 ASP B 63 OD1 92.3 REMARK 620 3 ASP B 65 OD1 92.9 78.2 REMARK 620 4 GLU B 67 O 91.8 155.8 77.8 REMARK 620 5 GLU B 72 OE1 127.7 115.2 134.1 80.3 REMARK 620 6 GLU B 72 OE2 101.1 78.8 153.4 123.6 48.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 92 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 93 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 92 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 93 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 94 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 95 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 B 94 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3D10 RELATED DB: PDB DBREF 3D0Y A 0 91 UNP P04271 S100B_HUMAN 1 92 DBREF 3D0Y B 0 91 UNP P04271 S100B_HUMAN 1 92 SEQRES 1 A 92 FME SER GLU LEU GLU LYS ALA MET VAL ALA LEU ILE ASP SEQRES 2 A 92 VAL PHE HIS GLN TYR SER GLY ARG GLU GLY ASP LYS HIS SEQRES 3 A 92 LYS LEU LYS LYS SER GLU LEU LYS GLU LEU ILE ASN ASN SEQRES 4 A 92 GLU LEU SER HIS PHE LEU GLU GLU ILE LYS GLU GLN GLU SEQRES 5 A 92 VAL VAL ASP LYS VAL MET GLU THR LEU ASP ASN ASP GLY SEQRES 6 A 92 ASP GLY GLU CYS ASP PHE GLN GLU PHE MET ALA PHE VAL SEQRES 7 A 92 ALA MET VAL THR THR ALA CYS HIS GLU PHE PHE GLU HIS SEQRES 8 A 92 GLU SEQRES 1 B 92 MET SER GLU LEU GLU LYS ALA MET VAL ALA LEU ILE ASP SEQRES 2 B 92 VAL PHE HIS GLN TYR SER GLY ARG GLU GLY ASP LYS HIS SEQRES 3 B 92 LYS LEU LYS LYS SER GLU LEU LYS GLU LEU ILE ASN ASN SEQRES 4 B 92 GLU LEU SER HIS PHE LEU GLU GLU ILE LYS GLU GLN GLU SEQRES 5 B 92 VAL VAL ASP LYS VAL MET GLU THR LEU ASP ASN ASP GLY SEQRES 6 B 92 ASP GLY GLU CYS ASP PHE GLN GLU PHE MET ALA PHE VAL SEQRES 7 B 92 ALA MET VAL THR THR ALA CYS HIS GLU PHE PHE GLU HIS SEQRES 8 B 92 GLU MODRES 3D0Y FME A 0 MET N-FORMYLMETHIONINE HET FME A 0 10 HET CA A 92 1 HET CA A 93 1 HET ZN A 94 1 HET ZN A 95 1 HET CA B 92 1 HET CA B 93 1 HET PG4 B 94 13 HETNAM FME N-FORMYLMETHIONINE HETNAM CA CALCIUM ION HETNAM ZN ZINC ION HETNAM PG4 TETRAETHYLENE GLYCOL FORMUL 1 FME C6 H11 N O3 S FORMUL 3 CA 4(CA 2+) FORMUL 5 ZN 2(ZN 2+) FORMUL 9 PG4 C8 H18 O5 FORMUL 10 HOH *181(H2 O) HELIX 1 1 SER A 1 GLY A 19 1 19 HELIX 2 2 LYS A 28 LEU A 40 1 13 HELIX 3 3 GLU A 49 ASP A 61 1 13 HELIX 4 4 ASP A 69 PHE A 88 1 20 HELIX 5 5 SER B 1 GLY B 19 1 19 HELIX 6 6 LYS B 28 LEU B 40 1 13 HELIX 7 7 GLU B 49 ASP B 61 1 13 HELIX 8 8 ASP B 69 GLU B 89 1 21 LINK C FME A 0 N SER A 1 1555 1555 1.32 LINK NE2 HIS A 15 ZN ZN A 94 1555 1555 1.99 LINK O SER A 18 CA CA A 93 1555 1555 2.31 LINK O GLU A 21 CA CA A 93 1555 1555 2.23 LINK O ASP A 23 CA CA A 93 1555 1555 2.26 LINK NE2 HIS A 25 ZN ZN A 94 1555 1555 2.01 LINK O LYS A 26 CA CA A 93 1555 1555 2.34 LINK OE1 GLU A 31 CA CA A 93 1555 1555 2.36 LINK OE2 GLU A 31 CA CA A 93 1555 1555 2.52 LINK OD1 ASP A 61 CA CA A 92 1555 1555 2.18 LINK OD2 ASP A 63 CA CA A 92 1555 1555 2.22 LINK OD1 ASP A 65 CA CA A 92 1555 1555 2.34 LINK O GLU A 67 CA CA A 92 1555 1555 2.27 LINK OE1 GLU A 72 CA CA A 92 1555 1555 2.52 LINK OE2 GLU A 72 CA CA A 92 1555 1555 2.62 LINK NE2 HIS A 85 ZN ZN A 95 1555 1555 2.18 LINK OE1 GLU A 89 ZN ZN A 95 1555 1555 2.02 LINK CA CA A 92 O HOH A 96 1555 1555 2.35 LINK ZN ZN A 94 NE2 HIS B 85 1555 1555 2.14 LINK ZN ZN A 94 OE1 GLU B 89 1555 1555 1.93 LINK ZN ZN A 95 NE2 HIS B 15 1555 1555 2.03 LINK ZN ZN A 95 NE2 HIS B 25 1555 1555 1.94 LINK O SER B 18 CA CA B 92 1555 1555 2.42 LINK O GLU B 21 CA CA B 92 1555 1555 2.57 LINK O ASP B 23 CA CA B 92 1555 1555 2.24 LINK O LYS B 26 CA CA B 92 1555 1555 2.37 LINK OE1 GLU B 31 CA CA B 92 1555 1555 2.25 LINK OE2 GLU B 31 CA CA B 92 1555 1555 2.50 LINK OD1 ASP B 61 CA CA B 93 1555 1555 1.86 LINK OD1 ASP B 63 CA CA B 93 1555 1555 2.29 LINK OD1 ASP B 65 CA CA B 93 1555 1555 2.53 LINK O GLU B 67 CA CA B 93 1555 1555 2.38 LINK OE1 GLU B 72 CA CA B 93 1555 1555 2.59 LINK OE2 GLU B 72 CA CA B 93 1555 1555 2.74 LINK CA CA B 92 O HOH B 95 1555 1555 2.48 SITE 1 AC1 5 ASP A 61 ASP A 63 ASP A 65 GLU A 67 SITE 2 AC1 5 GLU A 72 SITE 1 AC2 5 SER A 18 GLU A 21 ASP A 23 LYS A 26 SITE 2 AC2 5 GLU A 31 SITE 1 AC3 5 SER B 18 GLU B 21 ASP B 23 LYS B 26 SITE 2 AC3 5 GLU B 31 SITE 1 AC4 5 ASP B 61 ASP B 63 ASP B 65 GLU B 67 SITE 2 AC4 5 GLU B 72 SITE 1 AC5 4 HIS A 15 HIS A 25 HIS B 85 GLU B 89 SITE 1 AC6 4 HIS A 85 GLU A 89 HIS B 15 HIS B 25 SITE 1 AC7 5 HIS B 42 PHE B 43 GLU B 45 ALA B 83 SITE 2 AC7 5 CYS B 84 CRYST1 34.890 58.150 47.660 90.00 111.12 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028662 0.000000 0.011071 0.00000 SCALE2 0.000000 0.017197 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022493 0.00000 HETATM 1 N FME A 0 -6.946 4.844 -6.205 1.00 15.62 N HETATM 2 CN FME A 0 -7.269 5.421 -7.407 1.00 16.53 C HETATM 3 O1 FME A 0 -7.287 4.842 -8.493 1.00 18.51 O HETATM 4 CA FME A 0 -5.557 4.421 -6.207 1.00 15.17 C HETATM 5 CB FME A 0 -4.955 4.570 -4.809 1.00 15.01 C HETATM 6 CG FME A 0 -4.294 5.943 -4.544 1.00 13.90 C HETATM 7 SD FME A 0 -3.442 6.056 -3.008 1.00 18.29 S HETATM 8 CE FME A 0 -4.673 5.799 -1.760 1.00 15.03 C HETATM 9 C FME A 0 -5.625 2.964 -6.573 1.00 13.65 C HETATM 10 O FME A 0 -6.582 2.247 -6.180 1.00 13.98 O