PDB Short entry for 3D11 HEADER HYDROLASE 02-MAY-08 3D11 TITLE CRYSTAL STRUCTURES OF THE NIPAH G ATTACHMENT GLYCOPROTEIN CAVEAT 3D11 NAG D 1 HAS WRONG CHIRALITY AT ATOM C1 NAG A 1210 HAS WRONG CAVEAT 2 3D11 CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMAGGLUTININ-NEURAMINIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 176-602; COMPND 5 EC: 3.2.1.18; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NIPAH VIRUS; SOURCE 3 ORGANISM_TAXID: 121791; SOURCE 4 GENE: HN; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HI5; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PACGP67 KEYWDS BETA PROPELLER, ENVELOPE PROTEIN, GLYCOPROTEIN, HEMAGGLUTININ, KEYWDS 2 HYDROLASE, MEMBRANE, SIGNAL-ANCHOR, TRANSMEMBRANE, VIRION EXPDTA X-RAY DIFFRACTION AUTHOR K.XU,K.R.RAJASHANKAR,Y.P.CHAN,P.HIMANEN,C.C.BRODER,D.B.NIKOLOV REVDAT 6 29-JUL-20 3D11 1 CAVEAT COMPND REMARK SEQADV REVDAT 6 2 1 HET HETNAM FORMUL LINK REVDAT 6 3 1 SITE ATOM REVDAT 5 25-OCT-17 3D11 1 REMARK REVDAT 4 13-JUL-11 3D11 1 VERSN REVDAT 3 24-FEB-09 3D11 1 VERSN REVDAT 2 25-NOV-08 3D11 1 JRNL REVDAT 1 19-AUG-08 3D11 0 JRNL AUTH K.XU,K.R.RAJASHANKAR,Y.P.CHAN,J.P.HIMANEN,C.C.BRODER, JRNL AUTH 2 D.B.NIKOLOV JRNL TITL HOST CELL RECOGNITION BY THE HENIPAVIRUSES: CRYSTAL JRNL TITL 2 STRUCTURES OF THE NIPAH G ATTACHMENT GLYCOPROTEIN AND ITS JRNL TITL 3 COMPLEX WITH EPHRIN-B3. JRNL REF PROC.NATL.ACAD.SCI.USA V. 105 9953 2008 JRNL REFN ISSN 0027-8424 JRNL PMID 18632560 JRNL DOI 10.1073/PNAS.0804797105 REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 84.2 REMARK 3 NUMBER OF REFLECTIONS : 52865 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.760 REMARK 3 FREE R VALUE TEST SET COUNT : 2519 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.2510 - 10.6690 0.90 560 0 0.3380 0.0000 REMARK 3 2 10.6690 - 8.4970 0.94 601 0 0.2520 0.0000 REMARK 3 3 8.4970 - 7.4310 0.95 593 0 0.2700 0.0000 REMARK 3 4 7.4310 - 6.7550 0.95 594 0 0.2750 0.0000 REMARK 3 5 6.7550 - 6.2730 0.96 594 0 0.2590 0.0000 REMARK 3 6 6.2730 - 5.9050 0.96 577 0 0.2290 0.0000 REMARK 3 7 5.9050 - 5.6100 0.98 621 0 0.2260 0.0000 REMARK 3 8 5.6100 - 5.3660 0.95 599 0 0.1900 0.0000 REMARK 3 9 5.3660 - 5.1600 0.95 594 0 0.2100 0.0000 REMARK 3 10 5.1600 - 4.9820 0.94 580 0 0.1890 0.0000 REMARK 3 11 4.9820 - 4.8270 0.94 577 0 0.1910 0.0000 REMARK 3 12 4.8270 - 4.6890 0.96 604 0 0.1710 0.0000 REMARK 3 13 4.6890 - 4.5660 0.92 587 0 0.1710 0.0000 REMARK 3 14 4.5660 - 4.4550 0.95 571 0 0.1610 0.0000 REMARK 3 15 4.4550 - 4.3530 0.92 571 0 0.1530 0.0000 REMARK 3 16 4.3530 - 4.2610 0.93 594 0 0.1620 0.0000 REMARK 3 17 4.2610 - 4.1760 0.96 591 0 0.1770 0.0000 REMARK 3 18 4.1760 - 4.0970 0.93 556 0 0.1650 0.0000 REMARK 3 19 4.0970 - 4.0240 0.92 613 0 0.1690 0.0000 REMARK 3 20 4.0240 - 3.9560 0.95 575 0 0.1960 0.0000 REMARK 3 21 3.9560 - 3.8920 0.94 594 0 0.1960 0.0000 REMARK 3 22 3.8920 - 3.8320 0.93 522 0 0.1930 0.0000 REMARK 3 23 3.8320 - 3.7760 0.93 624 0 0.1900 0.0000 REMARK 3 24 3.7760 - 3.7230 0.95 590 0 0.1860 0.0000 REMARK 3 25 3.7230 - 3.6720 0.95 597 0 0.1930 0.0000 REMARK 3 26 3.6720 - 3.6250 0.96 591 0 0.1910 0.0000 REMARK 3 27 3.6250 - 3.5800 0.95 591 0 0.2070 0.0000 REMARK 3 28 3.5800 - 3.5360 0.95 581 0 0.1890 0.0000 REMARK 3 29 3.5360 - 3.4950 0.94 617 0 0.1940 0.0000 REMARK 3 30 3.4950 - 3.4560 0.96 564 0 0.1930 0.0000 REMARK 3 31 3.4560 - 3.4190 0.96 597 0 0.1990 0.0000 REMARK 3 32 3.4190 - 3.3830 0.96 585 0 0.2180 0.0000 REMARK 3 33 3.3830 - 3.3480 0.94 575 0 0.2160 0.0000 REMARK 3 34 3.3480 - 3.3150 0.97 630 0 0.2120 0.0000 REMARK 3 35 3.3150 - 3.2830 0.92 564 0 0.2270 0.0000 REMARK 3 36 3.2830 - 3.2530 0.93 579 0 0.2010 0.0000 REMARK 3 37 3.2530 - 3.2230 0.95 591 0 0.2210 0.0000 REMARK 3 38 3.2230 - 3.1940 0.94 571 0 0.2450 0.0000 REMARK 3 39 3.1940 - 3.1670 0.93 587 0 0.2300 0.0000 REMARK 3 40 3.1670 - 3.1400 0.91 602 0 0.2440 0.0000 REMARK 3 41 3.1400 - 3.1150 0.93 569 0 0.2440 0.0000 REMARK 3 42 3.1150 - 3.0900 0.92 551 0 0.2430 0.0000 REMARK 3 43 3.0900 - 3.0660 0.94 565 0 0.2270 0.0000 REMARK 3 44 3.0660 - 3.0420 0.92 600 0 0.2660 0.0000 REMARK 3 45 3.0420 - 3.0190 0.93 552 0 0.2610 0.0000 REMARK 3 46 3.0190 - 2.9970 0.93 565 0 0.2350 0.0000 REMARK 3 47 2.9970 - 2.9760 0.92 567 0 0.2560 0.0000 REMARK 3 48 2.9760 - 2.9550 0.88 558 0 0.2340 0.0000 REMARK 3 49 2.9550 - 2.9350 0.88 563 0 0.2290 0.0000 REMARK 3 50 2.9350 - 2.9150 0.92 540 0 0.2530 0.0000 REMARK 3 51 2.9150 - 2.8960 0.93 564 0 0.2730 0.0000 REMARK 3 52 2.8960 - 2.8770 0.88 591 0 0.2700 0.0000 REMARK 3 53 2.8770 - 2.8590 0.92 573 0 0.2320 0.0000 REMARK 3 54 2.8590 - 2.8420 0.90 541 0 0.2570 0.0000 REMARK 3 55 2.8420 - 2.8240 0.89 532 0 0.2710 0.0000 REMARK 3 56 2.8240 - 2.8070 0.88 568 0 0.2640 0.0000 REMARK 3 57 2.8070 - 2.7910 0.87 540 0 0.2670 0.0000 REMARK 3 58 2.7910 - 2.7750 0.87 514 0 0.2670 0.0000 REMARK 3 59 2.7750 - 2.7590 0.90 587 0 0.2440 0.0000 REMARK 3 60 2.7590 - 2.7430 0.85 534 0 0.2920 0.0000 REMARK 3 61 2.7430 - 2.7280 0.81 504 0 0.2860 0.0000 REMARK 3 62 2.7280 - 2.7140 0.87 511 0 0.2480 0.0000 REMARK 3 63 2.7140 - 2.6990 0.87 568 0 0.2740 0.0000 REMARK 3 64 2.6990 - 2.6850 0.87 547 0 0.2650 0.0000 REMARK 3 65 2.6850 - 2.6710 0.83 506 0 0.2810 0.0000 REMARK 3 66 2.6710 - 2.6580 0.85 521 0 0.2720 0.0000 REMARK 3 67 2.6580 - 2.6440 0.80 510 0 0.2860 0.0000 REMARK 3 68 2.6440 - 2.6310 0.80 486 0 0.2810 0.0000 REMARK 3 69 2.6310 - 2.6190 0.75 468 0 0.2780 0.0000 REMARK 3 70 2.6190 - 2.6060 0.77 473 0 0.2880 0.0000 REMARK 3 71 2.6060 - 2.5940 0.77 476 0 0.2740 0.0000 REMARK 3 72 2.5940 - 2.5820 0.78 511 0 0.3120 0.0000 REMARK 3 73 2.5820 - 2.5700 0.75 472 0 0.2730 0.0000 REMARK 3 74 2.5700 - 2.5580 0.73 419 0 0.2710 0.0000 REMARK 3 75 2.5580 - 2.5470 0.71 462 0 0.2760 0.0000 REMARK 3 76 2.5470 - 2.5360 0.69 430 0 0.2760 0.0000 REMARK 3 77 2.5360 - 2.5250 0.71 427 0 0.2830 0.0000 REMARK 3 78 2.5250 - 2.5140 0.72 467 0 0.2930 0.0000 REMARK 3 79 2.5140 - 2.5030 0.69 387 0 0.2890 0.0000 REMARK 3 80 2.5030 - 2.4930 0.66 434 0 0.2680 0.0000 REMARK 3 81 2.4930 - 2.4820 0.64 393 0 0.2750 0.0000 REMARK 3 82 2.4820 - 2.4720 0.65 412 0 0.2980 0.0000 REMARK 3 83 2.4720 - 2.4620 0.61 383 0 0.2710 0.0000 REMARK 3 84 2.4620 - 2.4530 0.59 322 0 0.3010 0.0000 REMARK 3 85 2.4530 - 2.4430 0.62 432 0 0.2730 0.0000 REMARK 3 86 2.4430 - 2.4330 0.55 350 0 0.3070 0.0000 REMARK 3 87 2.4330 - 2.4240 0.55 315 0 0.3130 0.0000 REMARK 3 88 2.4240 - 2.4150 0.55 338 0 0.3170 0.0000 REMARK 3 89 2.4150 - 2.4060 0.52 344 0 0.2620 0.0000 REMARK 3 90 2.4060 - 2.3970 0.49 294 0 0.3070 0.0000 REMARK 3 91 2.3970 - 2.3880 0.50 329 0 0.2890 0.0000 REMARK 3 92 2.3880 - 2.3790 0.51 284 0 0.3060 0.0000 REMARK 3 93 2.3790 - 2.3710 0.45 309 0 0.2960 0.0000 REMARK 3 94 2.3710 - 2.3620 0.42 241 0 0.3090 0.0000 REMARK 3 95 2.3620 - 2.3540 0.39 238 0 0.3080 0.0000 REMARK 3 96 2.3540 - 2.3460 0.36 237 0 0.3380 0.0000 REMARK 3 97 2.3460 - 2.3380 0.32 200 0 0.2730 0.0000 REMARK 3 98 2.3380 - 2.3300 0.35 194 0 0.2880 0.0000 REMARK 3 99 2.3300 - 2.3220 0.25 166 0 0.3400 0.0000 REMARK 3 100 2.3220 - 2.3140 0.27 176 0 0.3360 0.0000 REMARK 3 101 2.3140 - 2.3060 0.21 132 0 0.3240 0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 38.28 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 NULL REMARK 3 ANGLE : 0.757 NULL REMARK 3 CHIRALITY : 0.056 NULL REMARK 3 PLANARITY : 0.003 NULL REMARK 3 DIHEDRAL : 16.421 NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3D11 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1000047456. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-AUG-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5498 REMARK 200 MONOCHROMATOR : S REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55607 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.5 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 42.6 REMARK 200 DATA REDUNDANCY IN SHELL : 1.40 REMARK 200 R MERGE FOR SHELL (I) : 0.35700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, KI, PH 6.8, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 65.08050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.08050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 65.08050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.08050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 65.08050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 65.08050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 65.08050 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 65.08050 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 65.08050 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 65.08050 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 65.08050 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 65.08050 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 65.08050 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 65.08050 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 65.08050 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 65.08050 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 65.08050 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 65.08050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 I IOD A 4 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1460 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 176 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 287 118.09 -163.68 REMARK 500 ASN A 288 71.10 40.84 REMARK 500 GLU A 289 -13.26 85.88 REMARK 500 ASN A 306 69.95 -157.54 REMARK 500 LYS A 322 77.41 -119.97 REMARK 500 SER A 325 -121.26 1.98 REMARK 500 ASN A 326 59.37 -69.46 REMARK 500 HIS A 333 153.76 177.63 REMARK 500 TYR A 351 76.61 -158.48 REMARK 500 THR A 373 36.29 -80.68 REMARK 500 SER A 380 39.37 -84.59 REMARK 500 PRO A 383 100.74 -59.04 REMARK 500 LYS A 386 59.10 33.61 REMARK 500 SER A 419 66.00 -105.12 REMARK 500 SER A 459 -140.57 -133.65 REMARK 500 ASN A 481 70.77 -102.08 REMARK 500 GLN A 490 -154.97 -115.87 REMARK 500 PHE A 496 4.16 81.16 REMARK 500 PRO A 500 106.82 -53.35 REMARK 500 ASN A 534 74.33 67.96 REMARK 500 ALA A 552 -134.40 -142.25 REMARK 500 GLN A 559 -108.85 -132.60 REMARK 500 GLN A 600 147.53 -178.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3D12 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF NIPAH VIRUS G ATTACHMENT GLYCOPROTEIN IN REMARK 900 COMPLEX WITH ITS RECEPTOR EPHRIN-B3 DBREF 3D11 A 176 602 UNP Q9IH62 HN_NIPAV 176 602 SEQADV 3D11 ALA A 603 UNP Q9IH62 EXPRESSION TAG SEQRES 1 A 428 GLU GLY VAL SER ASN LEU VAL GLY LEU PRO ASN ASN ILE SEQRES 2 A 428 CYS LEU GLN LYS THR SER ASN GLN ILE LEU LYS PRO LYS SEQRES 3 A 428 LEU ILE SER TYR THR LEU PRO VAL VAL GLY GLN SER GLY SEQRES 4 A 428 THR CYS ILE THR ASP PRO LEU LEU ALA MET ASP GLU GLY SEQRES 5 A 428 TYR PHE ALA TYR SER HIS LEU GLU ARG ILE GLY SER CYS SEQRES 6 A 428 SER ARG GLY VAL SER LYS GLN ARG ILE ILE GLY VAL GLY SEQRES 7 A 428 GLU VAL LEU ASP ARG GLY ASP GLU VAL PRO SER LEU PHE SEQRES 8 A 428 MET THR ASN VAL TRP THR PRO PRO ASN PRO ASN THR VAL SEQRES 9 A 428 TYR HIS CYS SER ALA VAL TYR ASN ASN GLU PHE TYR TYR SEQRES 10 A 428 VAL LEU CYS ALA VAL SER THR VAL GLY ASP PRO ILE LEU SEQRES 11 A 428 ASN SER THR TYR TRP SER GLY SER LEU MET MET THR ARG SEQRES 12 A 428 LEU ALA VAL LYS PRO LYS SER ASN GLY GLY GLY TYR ASN SEQRES 13 A 428 GLN HIS GLN LEU ALA LEU ARG SER ILE GLU LYS GLY ARG SEQRES 14 A 428 TYR ASP LYS VAL MET PRO TYR GLY PRO SER GLY ILE LYS SEQRES 15 A 428 GLN GLY ASP THR LEU TYR PHE PRO ALA VAL GLY PHE LEU SEQRES 16 A 428 VAL ARG THR GLU PHE LYS TYR ASN ASP SER ASN CYS PRO SEQRES 17 A 428 ILE THR LYS CYS GLN TYR SER LYS PRO GLU ASN CYS ARG SEQRES 18 A 428 LEU SER MET GLY ILE ARG PRO ASN SER HIS TYR ILE LEU SEQRES 19 A 428 ARG SER GLY LEU LEU LYS TYR ASN LEU SER ASP GLY GLU SEQRES 20 A 428 ASN PRO LYS VAL VAL PHE ILE GLU ILE SER ASP GLN ARG SEQRES 21 A 428 LEU SER ILE GLY SER PRO SER LYS ILE TYR ASP SER LEU SEQRES 22 A 428 GLY GLN PRO VAL PHE TYR GLN ALA SER PHE SER TRP ASP SEQRES 23 A 428 THR MET ILE LYS PHE GLY ASP VAL LEU THR VAL ASN PRO SEQRES 24 A 428 LEU VAL VAL ASN TRP ARG ASN ASN THR VAL ILE SER ARG SEQRES 25 A 428 PRO GLY GLN SER GLN CYS PRO ARG PHE ASN THR CYS PRO SEQRES 26 A 428 GLU ILE CYS TRP GLU GLY VAL TYR ASN ASP ALA PHE LEU SEQRES 27 A 428 ILE ASP ARG ILE ASN TRP ILE SER ALA GLY VAL PHE LEU SEQRES 28 A 428 ASP SER ASN GLN THR ALA GLU ASN PRO VAL PHE THR VAL SEQRES 29 A 428 PHE LYS ASP ASN GLU ILE LEU TYR ARG ALA GLN LEU ALA SEQRES 30 A 428 SER GLU ASP THR ASN ALA GLN LYS THR ILE THR ASN CYS SEQRES 31 A 428 PHE LEU LEU LYS ASN LYS ILE TRP CYS ILE SER LEU VAL SEQRES 32 A 428 GLU ILE TYR ASP THR GLY ASP ASN VAL ILE ARG PRO LYS SEQRES 33 A 428 LEU PHE ALA VAL LYS ILE PRO GLU GLN CYS THR ALA MODRES 3D11 ASN A 378 ASN GLYCOSYLATION SITE MODRES 3D11 ASN A 481 ASN GLYCOSYLATION SITE MODRES 3D11 ASN A 529 ASN GLYCOSYLATION SITE MODRES 3D11 ASN A 306 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET BMA D 4 11 HET MAN D 5 11 HET NAG A1210 14 HET IOD A 1 1 HET IOD A 2 1 HET IOD A 3 1 HET IOD A 4 1 HET IOD A 5 1 HET IOD A 6 1 HET IOD A 7 1 HET IOD A 8 1 HET IOD A 9 1 HET IOD A 10 1 HET IOD A 11 1 HET IOD A 12 1 HET IOD A 13 1 HET IOD A 14 1 HET IOD A 15 1 HET IOD A 16 1 HET IOD A 17 1 HET IOD A 18 1 HET IOD A 19 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM IOD IODIDE ION FORMUL 2 NAG 7(C8 H15 N O6) FORMUL 4 BMA 2(C6 H12 O6) FORMUL 4 MAN C6 H12 O6 FORMUL 6 IOD 19(I 1-) FORMUL 25 HOH *210(H2 O) HELIX 1 1 SER A 204 LEU A 207 5 4 HELIX 2 2 ASP A 302 SER A 307 5 6 HELIX 3 3 GLY A 327 ASN A 331 1 5 HELIX 4 4 THR A 373 PHE A 375 5 3 HELIX 5 5 ASN A 378 CYS A 382 5 5 HELIX 6 6 GLU A 393 SER A 398 1 6 SHEET 1 A 5 VAL A 178 SER A 179 0 SHEET 2 A 5 ALA A 558 LEU A 568 -1 O LEU A 567 N SER A 179 SHEET 3 A 5 LYS A 571 ASP A 582 -1 O ILE A 575 N ASN A 564 SHEET 4 A 5 VAL A 587 LYS A 596 -1 O VAL A 587 N ASP A 582 SHEET 5 A 5 LYS A 201 LEU A 202 -1 N LYS A 201 O ALA A 594 SHEET 1 B 4 THR A 215 ASP A 225 0 SHEET 2 B 4 TYR A 228 ILE A 237 -1 O LEU A 234 N THR A 218 SHEET 3 B 4 VAL A 244 ASP A 257 -1 O GLY A 251 N TYR A 231 SHEET 4 B 4 PRO A 263 TRP A 271 -1 O TRP A 271 N ILE A 250 SHEET 1 C 4 VAL A 279 ASN A 287 0 SHEET 2 C 4 PHE A 290 VAL A 297 -1 O ALA A 296 N TYR A 280 SHEET 3 C 4 LEU A 314 ALA A 320 -1 O LEU A 319 N TYR A 291 SHEET 4 C 4 GLN A 332 LEU A 335 -1 O LEU A 335 N MET A 316 SHEET 1 D 5 ILE A 340 GLU A 341 0 SHEET 2 D 5 VAL A 426 GLU A 430 1 O PHE A 428 N GLU A 341 SHEET 3 D 5 TYR A 407 ASN A 417 -1 N LYS A 415 O VAL A 427 SHEET 4 D 5 THR A 361 VAL A 371 -1 N LEU A 362 O TYR A 416 SHEET 5 D 5 LYS A 347 PRO A 350 -1 N LYS A 347 O PHE A 369 SHEET 1 E 5 ILE A 340 GLU A 341 0 SHEET 2 E 5 VAL A 426 GLU A 430 1 O PHE A 428 N GLU A 341 SHEET 3 E 5 TYR A 407 ASN A 417 -1 N LYS A 415 O VAL A 427 SHEET 4 E 5 THR A 361 VAL A 371 -1 N LEU A 362 O TYR A 416 SHEET 5 E 5 ILE A 356 GLN A 358 -1 N GLN A 358 O THR A 361 SHEET 1 F 4 SER A 442 SER A 447 0 SHEET 2 F 4 GLN A 450 GLN A 455 -1 O VAL A 452 N TYR A 445 SHEET 3 F 4 LYS A 465 THR A 471 -1 O LYS A 465 N GLN A 455 SHEET 4 F 4 VAL A 476 TRP A 479 -1 O ASN A 478 N ASP A 468 SHEET 1 G 4 ALA A 511 ASP A 515 0 SHEET 2 G 4 ILE A 520 LEU A 526 -1 O ALA A 522 N PHE A 512 SHEET 3 G 4 PRO A 535 PHE A 540 -1 O THR A 538 N GLY A 523 SHEET 4 G 4 ILE A 545 GLN A 550 -1 O TYR A 547 N VAL A 539 SSBOND 1 CYS A 189 CYS A 601 1555 1555 2.04 SSBOND 2 CYS A 216 CYS A 240 1555 1555 2.05 SSBOND 3 CYS A 282 CYS A 295 1555 1555 2.08 SSBOND 4 CYS A 382 CYS A 395 1555 1555 2.05 SSBOND 5 CYS A 387 CYS A 499 1555 1555 2.05 SSBOND 6 CYS A 493 CYS A 503 1555 1555 2.06 SSBOND 7 CYS A 565 CYS A 574 1555 1555 2.04 LINK ND2 ASN A 306 C1 NAG D 1 1555 1555 1.46 LINK ND2 ASN A 378 C1 NAG A1210 1555 1555 1.45 LINK ND2 ASN A 481 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 529 C1 NAG C 1 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.41 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.40 LINK O3 BMA D 3 C1 BMA D 4 1555 1555 1.41 LINK O6 BMA D 3 C1 MAN D 5 1555 1555 1.42 CISPEP 1 GLY A 359 ASP A 360 0 -2.50 CISPEP 2 ASN A 473 PRO A 474 0 -5.75 CRYST1 130.161 130.161 130.161 90.00 90.00 90.00 P 21 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007683 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007683 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007683 0.00000