PDB Short entry for 3D85 HEADER IMMUNE SYSTEM/CYTOKINE 22-MAY-08 3D85 TITLE CRYSTAL STRUCTURE OF IL-23 IN COMPLEX WITH NEUTRALIZING FAB COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAB OF ANTIBODY 7G10, LIGHT CHAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LIGHT CHAIN; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FAB OF ANTIBODY 7G10, HEAVY CHAIN; COMPND 7 CHAIN: B; COMPND 8 FRAGMENT: HEAVY CHAIN; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: INTERLEUKIN-23 SUBUNIT P19; COMPND 11 CHAIN: C; COMPND 12 FRAGMENT: SUBUNIT P19; COMPND 13 SYNONYM: INTERLEUKIN-23 SUBUNIT ALPHA; IL-23 SUBUNIT ALPHA; IL-23P19; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: INTERLEUKIN-12 SUBUNIT P40; COMPND 17 CHAIN: D; COMPND 18 FRAGMENT: SUBUNIT P40; COMPND 19 SYNONYM: IL-12B; IL-12 SUBUNIT P40; CYTOTOXIC LYMPHOCYTE MATURATION COMPND 20 FACTOR 40 KDA SUBUNIT; CLMF P40; NK CELL STIMULATORY FACTOR CHAIN 2; COMPND 21 NKSF2; COMPND 22 ENGINEERED: YES; COMPND 23 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: IL23A, SGRF, UNQ2498/PRO5798; SOURCE 14 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 15 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 17 EXPRESSION_SYSTEM_CELL_LINE: HI-FIVE CELLS; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 19 EXPRESSION_SYSTEM_PLASMID: PFASTBAC DUAL; SOURCE 20 MOL_ID: 4; SOURCE 21 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 22 ORGANISM_COMMON: HUMAN; SOURCE 23 ORGANISM_TAXID: 9606; SOURCE 24 GENE: IL12B, NKSF2; SOURCE 25 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 26 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 27 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 28 EXPRESSION_SYSTEM_CELL_LINE: HI-FIVE CELLS; SOURCE 29 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 30 EXPRESSION_SYSTEM_PLASMID: PFASTBAC DUAL KEYWDS INTERLEUKIN-23, FAB, IMMUNE SYSTEM-CYTOKINE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.M.BEYER,R.INGRAM,L.RAMANATHAN,P.REICHERT,H.LE,V.MADISON REVDAT 4 30-AUG-23 3D85 1 REMARK REVDAT 3 20-OCT-21 3D85 1 REMARK SEQADV REVDAT 2 23-DEC-08 3D85 1 JRNL VERSN REVDAT 1 02-SEP-08 3D85 0 JRNL AUTH B.M.BEYER,R.INGRAM,L.RAMANATHAN,P.REICHERT,H.V.LE,V.MADISON, JRNL AUTH 2 P.ORTH JRNL TITL CRYSTAL STRUCTURES OF THE PRO-INFLAMMATORY CYTOKINE JRNL TITL 2 INTERLEUKIN-23 AND ITS COMPLEX WITH A HIGH-AFFINITY JRNL TITL 3 NEUTRALIZING ANTIBODY JRNL REF J.MOL.BIOL. V. 382 942 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18708069 JRNL DOI 10.1016/J.JMB.2008.08.001 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 2.1.1 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 106.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 77149 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1541 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 9 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.01 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.02 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 12064 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 21.890 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 11839 REMARK 3 BIN R VALUE (WORKING SET) : 0.2184 REMARK 3 BIN FREE R VALUE : 0.2462 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 1.87 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 225 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6569 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 906 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.45 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.25854 REMARK 3 B22 (A**2) : -2.88612 REMARK 3 B33 (A**2) : -2.37242 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.55985 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6768 ; 2.000 ; NULL REMARK 3 BOND ANGLES : 9160 ; 2.000 ; NULL REMARK 3 TORSION ANGLES : 1296 ; 0.000 ; NULL REMARK 3 TRIGONAL CARBON PLANES : 152 ; 2.000 ; NULL REMARK 3 GENERAL PLANES : 968 ; 5.000 ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS : 6768 ; 20.000 ; NULL REMARK 3 BAD NON-BONDED CONTACTS : 104 ; 5.000 ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : NULL ; NULL ; NULL REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : NULL ; NULL ; NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.25 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : NULL REMARK 3 OTHER TORSION ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3D85 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000047712. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-OCT-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : CRYOGENICALLY-COOLED SI(111) REMARK 200 DOUBLE-CRYSTAL SYSTEM REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77159 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 106.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : 0.08200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.46600 REMARK 200 R SYM FOR SHELL (I) : 0.46600 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1NGY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% MPD, 7% PEG 6000, 100MM IMIDAZOLE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K, PH 7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.04550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HETERO-TETRAMER WITH CHAINS A REMARK 300 AND B REPRESENTING THE FAB, CHAIN C IS IL-23 SUBUNIT P19 AND CHAIN REMARK 300 D IS IL-23 SUBUNIT P40. ONE HETERO-TETRAMER IS LOCATED WITHIN THE REMARK 300 ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS A 214 REMARK 465 SER B 132 REMARK 465 CYS B 218 REMARK 465 ASP B 219 REMARK 465 LYS B 220 REMARK 465 THR B 221 REMARK 465 HIS B 222 REMARK 465 THR B 223 REMARK 465 ARG C 1 REMARK 465 ALA C 2 REMARK 465 VAL C 3 REMARK 465 PRO C 4 REMARK 465 GLY C 5 REMARK 465 GLY C 6 REMARK 465 SER C 7 REMARK 465 SER C 8 REMARK 465 GLY C 33 REMARK 465 HIS C 34 REMARK 465 MET C 35 REMARK 465 ASP C 36 REMARK 465 LEU C 37 REMARK 465 ARG C 38 REMARK 465 GLU C 39 REMARK 465 GLU C 40 REMARK 465 GLY C 41 REMARK 465 ASP C 42 REMARK 465 GLU C 43 REMARK 465 GLU C 44 REMARK 465 THR C 45 REMARK 465 THR C 46 REMARK 465 ASN C 47 REMARK 465 GLU C 119 REMARK 465 GLY C 120 REMARK 465 HIS C 121 REMARK 465 HIS C 122 REMARK 465 TRP C 123 REMARK 465 GLU C 124 REMARK 465 THR C 125 REMARK 465 GLN C 126 REMARK 465 GLN C 127 REMARK 465 ILE C 128 REMARK 465 PRO C 129 REMARK 465 SER C 130 REMARK 465 SER C 169 REMARK 465 PRO C 170 REMARK 465 GLY C 171 REMARK 465 SER C 172 REMARK 465 HIS C 173 REMARK 465 HIS C 174 REMARK 465 HIS C 175 REMARK 465 HIS C 176 REMARK 465 HIS C 177 REMARK 465 HIS C 178 REMARK 465 GLU D 100 REMARK 465 PRO D 101 REMARK 465 LYS D 102 REMARK 465 GLY D 160 REMARK 465 ASP D 161 REMARK 465 LYS D 225 REMARK 465 ASN D 226 REMARK 465 SER D 227 REMARK 465 ARG D 228 REMARK 465 LYS D 258 REMARK 465 SER D 259 REMARK 465 LYS D 260 REMARK 465 ARG D 261 REMARK 465 GLU D 262 REMARK 465 LYS D 263 REMARK 465 SER D 306 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 216 NZ REMARK 470 LYS D 99 CG CD CE NZ REMARK 470 ASN D 103 CG OD1 ND2 REMARK 470 ARG D 159 CG CD NE CZ NH1 NH2 REMARK 470 ASN D 162 CG OD1 ND2 REMARK 470 LYS D 222 CG CD CE NZ REMARK 470 LEU D 224 CG CD1 CD2 REMARK 470 LYS D 264 CD CE NZ REMARK 470 ARG D 266 NE CZ NH1 NH2 REMARK 470 ARG D 279 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 638 O HOH B 666 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO D 17 C - N - CA ANGL. DEV. = 10.1 DEGREES REMARK 500 PRO D 20 C - N - CA ANGL. DEV. = 19.7 DEGREES REMARK 500 PRO D 20 C - N - CD ANGL. DEV. = -19.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 30 -126.24 51.12 REMARK 500 ALA A 51 -44.08 73.22 REMARK 500 SER A 52 -0.34 -140.44 REMARK 500 ASN A 138 71.77 49.94 REMARK 500 SER B 85 61.62 37.36 REMARK 500 ASN B 99 134.61 -38.41 REMARK 500 SER B 134 -142.90 -58.04 REMARK 500 GLN C 117 80.09 -159.14 REMARK 500 PRO D 17 124.95 -28.81 REMARK 500 ASP D 18 60.66 79.57 REMARK 500 ALA D 19 -139.27 25.61 REMARK 500 ASP D 41 -132.56 54.57 REMARK 500 LEU D 75 -61.49 -95.30 REMARK 500 THR D 92 54.43 -144.17 REMARK 500 LYS D 104 73.67 -32.73 REMARK 500 LYS D 195 -109.80 61.86 REMARK 500 ASN D 218 49.65 37.82 REMARK 500 TYR D 246 -62.06 -104.07 REMARK 500 ASN D 281 -6.22 84.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1F45 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF IL-12 REMARK 900 RELATED ID: 3D87 RELATED DB: PDB DBREF 3D85 C 1 170 UNP Q9NPF7 IL23A_HUMAN 20 189 DBREF 3D85 D 1 306 UNP P29460 IL12B_HUMAN 23 328 DBREF 3D85 A 1 214 PDB 3D85 3D85 1 214 DBREF 3D85 B 1 223 PDB 3D85 3D85 1 223 SEQADV 3D85 GLY C 171 UNP Q9NPF7 EXPRESSION TAG SEQADV 3D85 SER C 172 UNP Q9NPF7 EXPRESSION TAG SEQADV 3D85 HIS C 173 UNP Q9NPF7 EXPRESSION TAG SEQADV 3D85 HIS C 174 UNP Q9NPF7 EXPRESSION TAG SEQADV 3D85 HIS C 175 UNP Q9NPF7 EXPRESSION TAG SEQADV 3D85 HIS C 176 UNP Q9NPF7 EXPRESSION TAG SEQADV 3D85 HIS C 177 UNP Q9NPF7 EXPRESSION TAG SEQADV 3D85 HIS C 178 UNP Q9NPF7 EXPRESSION TAG SEQADV 3D85 GLN D 200 UNP P29460 ASN 222 ENGINEERED MUTATION SEQRES 1 A 214 ASP ILE VAL MET THR GLN SER PRO ALA THR LEU SER VAL SEQRES 2 A 214 THR PRO GLY ASP ARG VAL SER LEU SER CYS ARG ALA SER SEQRES 3 A 214 GLN SER ILE SER ASP TYR LEU HIS TRP TYR ARG GLN LYS SEQRES 4 A 214 SER HIS GLU SER PRO ARG LEU LEU ILE LYS TYR ALA SER SEQRES 5 A 214 GLN SER ILE SER GLY ILE PRO SER ARG PHE SER GLY SER SEQRES 6 A 214 GLY SER GLY SER ASP PHE THR LEU SER ILE ASN SER VAL SEQRES 7 A 214 GLU PRO GLU ASP VAL GLY VAL TYR TYR CYS GLN ASN GLY SEQRES 8 A 214 HIS SER PHE PRO PHE THR PHE GLY SER GLY THR LYS LEU SEQRES 9 A 214 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 A 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 A 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 A 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 A 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 A 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 A 214 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 A 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 A 214 PHE ASN ARG GLY GLU CYS SEQRES 1 B 223 GLU VAL GLN LEU GLN GLN SER GLY PRO GLU LEU VAL LYS SEQRES 2 B 223 PRO GLY ALA SER VAL LYS MET SER CYS LYS ALA SER GLY SEQRES 3 B 223 TYR THR PHE THR SER ASN VAL MET HIS TRP VAL LYS GLN SEQRES 4 B 223 LYS PRO GLY GLN GLY LEU GLU TRP ILE GLY TYR ILE ASN SEQRES 5 B 223 PRO TYR ASN ASP GLY THR LYS TYR ASN GLU LYS PHE LYS SEQRES 6 B 223 GLY LYS ALA THR LEU THR SER ASP LYS SER SER SER THR SEQRES 7 B 223 ALA TYR MET GLU LEU SER SER LEU THR SER GLU ASP SER SEQRES 8 B 223 ALA VAL TYR TYR CYS ALA ARG ASN TRP ASP VAL ALA TYR SEQRES 9 B 223 TRP GLY GLN GLY THR LEU VAL THR VAL SER ALA ALA SER SEQRES 10 B 223 THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER SEQRES 11 B 223 LYS SER THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU SEQRES 12 B 223 VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP SEQRES 13 B 223 ASN SER GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO SEQRES 14 B 223 ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SER SEQRES 15 B 223 VAL VAL THR VAL PRO SER SER SER LEU GLY THR GLN THR SEQRES 16 B 223 TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS SEQRES 17 B 223 VAL ASP LYS LYS VAL GLU PRO LYS SER CYS ASP LYS THR SEQRES 18 B 223 HIS THR SEQRES 1 C 178 ARG ALA VAL PRO GLY GLY SER SER PRO ALA TRP THR GLN SEQRES 2 C 178 CYS GLN GLN LEU SER GLN LYS LEU CYS THR LEU ALA TRP SEQRES 3 C 178 SER ALA HIS PRO LEU VAL GLY HIS MET ASP LEU ARG GLU SEQRES 4 C 178 GLU GLY ASP GLU GLU THR THR ASN ASP VAL PRO HIS ILE SEQRES 5 C 178 GLN CYS GLY ASP GLY CYS ASP PRO GLN GLY LEU ARG ASP SEQRES 6 C 178 ASN SER GLN PHE CYS LEU GLN ARG ILE HIS GLN GLY LEU SEQRES 7 C 178 ILE PHE TYR GLU LYS LEU LEU GLY SER ASP ILE PHE THR SEQRES 8 C 178 GLY GLU PRO SER LEU LEU PRO ASP SER PRO VAL GLY GLN SEQRES 9 C 178 LEU HIS ALA SER LEU LEU GLY LEU SER GLN LEU LEU GLN SEQRES 10 C 178 PRO GLU GLY HIS HIS TRP GLU THR GLN GLN ILE PRO SER SEQRES 11 C 178 LEU SER PRO SER GLN PRO TRP GLN ARG LEU LEU LEU ARG SEQRES 12 C 178 PHE LYS ILE LEU ARG SER LEU GLN ALA PHE VAL ALA VAL SEQRES 13 C 178 ALA ALA ARG VAL PHE ALA HIS GLY ALA ALA THR LEU SER SEQRES 14 C 178 PRO GLY SER HIS HIS HIS HIS HIS HIS SEQRES 1 D 306 ILE TRP GLU LEU LYS LYS ASP VAL TYR VAL VAL GLU LEU SEQRES 2 D 306 ASP TRP TYR PRO ASP ALA PRO GLY GLU MET VAL VAL LEU SEQRES 3 D 306 THR CYS ASP THR PRO GLU GLU ASP GLY ILE THR TRP THR SEQRES 4 D 306 LEU ASP GLN SER SER GLU VAL LEU GLY SER GLY LYS THR SEQRES 5 D 306 LEU THR ILE GLN VAL LYS GLU PHE GLY ASP ALA GLY GLN SEQRES 6 D 306 TYR THR CYS HIS LYS GLY GLY GLU VAL LEU SER HIS SER SEQRES 7 D 306 LEU LEU LEU LEU HIS LYS LYS GLU ASP GLY ILE TRP SER SEQRES 8 D 306 THR ASP ILE LEU LYS ASP GLN LYS GLU PRO LYS ASN LYS SEQRES 9 D 306 THR PHE LEU ARG CYS GLU ALA LYS ASN TYR SER GLY ARG SEQRES 10 D 306 PHE THR CYS TRP TRP LEU THR THR ILE SER THR ASP LEU SEQRES 11 D 306 THR PHE SER VAL LYS SER SER ARG GLY SER SER ASP PRO SEQRES 12 D 306 GLN GLY VAL THR CYS GLY ALA ALA THR LEU SER ALA GLU SEQRES 13 D 306 ARG VAL ARG GLY ASP ASN LYS GLU TYR GLU TYR SER VAL SEQRES 14 D 306 GLU CYS GLN GLU ASP SER ALA CYS PRO ALA ALA GLU GLU SEQRES 15 D 306 SER LEU PRO ILE GLU VAL MET VAL ASP ALA VAL HIS LYS SEQRES 16 D 306 LEU LYS TYR GLU GLN TYR THR SER SER PHE PHE ILE ARG SEQRES 17 D 306 ASP ILE ILE LYS PRO ASP PRO PRO LYS ASN LEU GLN LEU SEQRES 18 D 306 LYS PRO LEU LYS ASN SER ARG GLN VAL GLU VAL SER TRP SEQRES 19 D 306 GLU TYR PRO ASP THR TRP SER THR PRO HIS SER TYR PHE SEQRES 20 D 306 SER LEU THR PHE CYS VAL GLN VAL GLN GLY LYS SER LYS SEQRES 21 D 306 ARG GLU LYS LYS ASP ARG VAL PHE THR ASP LYS THR SER SEQRES 22 D 306 ALA THR VAL ILE CYS ARG LYS ASN ALA SER ILE SER VAL SEQRES 23 D 306 ARG ALA GLN ASP ARG TYR TYR SER SER SER TRP SER GLU SEQRES 24 D 306 TRP ALA SER VAL PRO CYS SER HET IMD A 503 5 HET MPD A 502 8 HET MPD B 501 8 HETNAM IMD IMIDAZOLE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 5 IMD C3 H5 N2 1+ FORMUL 6 MPD 2(C6 H14 O2) FORMUL 8 HOH *906(H2 O) HELIX 1 1 GLU A 79 VAL A 83 5 5 HELIX 2 2 SER A 121 SER A 127 1 7 HELIX 3 3 LYS A 183 HIS A 189 1 7 HELIX 4 4 THR B 28 ASN B 32 5 5 HELIX 5 5 GLU B 62 LYS B 65 5 4 HELIX 6 6 THR B 87 SER B 91 5 5 HELIX 7 7 TRP B 100 ALA B 103 5 4 HELIX 8 8 SER B 158 ALA B 160 5 3 HELIX 9 9 SER B 189 LEU B 191 5 3 HELIX 10 10 LYS B 203 ASN B 206 5 4 HELIX 11 11 ALA C 10 SER C 27 1 18 HELIX 12 12 GLN C 53 GLY C 57 5 5 HELIX 13 13 ASP C 59 ASN C 66 1 8 HELIX 14 14 SER C 67 GLY C 86 1 20 HELIX 15 15 SER C 87 GLY C 92 1 6 HELIX 16 16 PRO C 101 GLN C 117 1 17 HELIX 17 17 GLN C 135 TRP C 137 5 3 HELIX 18 18 GLN C 138 LEU C 168 1 31 HELIX 19 19 GLU D 59 ALA D 63 5 5 HELIX 20 20 PHE D 206 ILE D 211 1 6 SHEET 1 A 4 MET A 4 SER A 7 0 SHEET 2 A 4 VAL A 19 ALA A 25 -1 O ARG A 24 N THR A 5 SHEET 3 A 4 ASP A 70 ILE A 75 -1 O PHE A 71 N CYS A 23 SHEET 4 A 4 PHE A 62 GLY A 66 -1 N SER A 63 O SER A 74 SHEET 1 B 6 THR A 10 VAL A 13 0 SHEET 2 B 6 THR A 102 ILE A 106 1 O GLU A 105 N LEU A 11 SHEET 3 B 6 GLY A 84 ASN A 90 -1 N GLY A 84 O LEU A 104 SHEET 4 B 6 LEU A 33 GLN A 38 -1 N GLN A 38 O VAL A 85 SHEET 5 B 6 ARG A 45 LYS A 49 -1 O LEU A 47 N TRP A 35 SHEET 6 B 6 GLN A 53 SER A 54 -1 O GLN A 53 N LYS A 49 SHEET 1 C 4 THR A 10 VAL A 13 0 SHEET 2 C 4 THR A 102 ILE A 106 1 O GLU A 105 N LEU A 11 SHEET 3 C 4 GLY A 84 ASN A 90 -1 N GLY A 84 O LEU A 104 SHEET 4 C 4 THR A 97 PHE A 98 -1 O THR A 97 N ASN A 90 SHEET 1 D 4 SER A 114 PHE A 118 0 SHEET 2 D 4 THR A 129 PHE A 139 -1 O LEU A 135 N PHE A 116 SHEET 3 D 4 TYR A 173 SER A 182 -1 O SER A 177 N CYS A 134 SHEET 4 D 4 SER A 159 VAL A 163 -1 N SER A 162 O SER A 176 SHEET 1 E 4 ALA A 153 LEU A 154 0 SHEET 2 E 4 ALA A 144 VAL A 150 -1 N VAL A 150 O ALA A 153 SHEET 3 E 4 VAL A 191 HIS A 198 -1 O GLU A 195 N GLN A 147 SHEET 4 E 4 VAL A 205 ASN A 210 -1 O VAL A 205 N VAL A 196 SHEET 1 F 4 GLN B 3 GLN B 6 0 SHEET 2 F 4 VAL B 18 SER B 25 -1 O LYS B 23 N GLN B 5 SHEET 3 F 4 THR B 78 LEU B 83 -1 O MET B 81 N MET B 20 SHEET 4 F 4 ALA B 68 ASP B 73 -1 N ASP B 73 O THR B 78 SHEET 1 G 6 GLU B 10 VAL B 12 0 SHEET 2 G 6 THR B 109 VAL B 113 1 O THR B 112 N VAL B 12 SHEET 3 G 6 ALA B 92 ARG B 98 -1 N ALA B 92 O VAL B 111 SHEET 4 G 6 MET B 34 GLN B 39 -1 N GLN B 39 O VAL B 93 SHEET 5 G 6 LEU B 45 ILE B 51 -1 O GLU B 46 N LYS B 38 SHEET 6 G 6 THR B 58 TYR B 60 -1 O LYS B 59 N TYR B 50 SHEET 1 H 4 SER B 122 LEU B 126 0 SHEET 2 H 4 THR B 137 TYR B 147 -1 O LEU B 143 N PHE B 124 SHEET 3 H 4 TYR B 178 PRO B 187 -1 O LEU B 180 N VAL B 144 SHEET 4 H 4 VAL B 165 THR B 167 -1 N HIS B 166 O VAL B 183 SHEET 1 I 4 SER B 122 LEU B 126 0 SHEET 2 I 4 THR B 137 TYR B 147 -1 O LEU B 143 N PHE B 124 SHEET 3 I 4 TYR B 178 PRO B 187 -1 O LEU B 180 N VAL B 144 SHEET 4 I 4 VAL B 171 LEU B 172 -1 N VAL B 171 O SER B 179 SHEET 1 J 3 THR B 153 TRP B 156 0 SHEET 2 J 3 ILE B 197 HIS B 202 -1 O ASN B 199 N SER B 155 SHEET 3 J 3 THR B 207 LYS B 212 -1 O VAL B 209 N VAL B 200 SHEET 1 K 6 TRP D 2 LYS D 5 0 SHEET 2 K 6 VAL D 8 ASP D 14 -1 O VAL D 10 N TRP D 2 SHEET 3 K 6 GLU D 73 GLU D 86 1 O LEU D 79 N TYR D 9 SHEET 4 K 6 GLY D 64 LYS D 70 -1 N CYS D 68 O LEU D 75 SHEET 5 K 6 THR D 37 LEU D 40 -1 N THR D 37 O HIS D 69 SHEET 6 K 6 GLY D 48 SER D 49 -1 O GLY D 48 N TRP D 38 SHEET 1 L 4 TRP D 2 LYS D 5 0 SHEET 2 L 4 VAL D 8 ASP D 14 -1 O VAL D 10 N TRP D 2 SHEET 3 L 4 GLU D 73 GLU D 86 1 O LEU D 79 N TYR D 9 SHEET 4 L 4 ILE D 89 TRP D 90 -1 O ILE D 89 N GLU D 86 SHEET 1 M 2 GLU D 22 THR D 27 0 SHEET 2 M 2 THR D 52 VAL D 57 -1 O ILE D 55 N VAL D 24 SHEET 1 N 4 ARG D 108 GLU D 110 0 SHEET 2 N 4 ARG D 117 THR D 124 -1 O THR D 119 N GLU D 110 SHEET 3 N 4 GLU D 164 GLU D 173 -1 O TYR D 165 N THR D 124 SHEET 4 N 4 THR D 152 ARG D 157 -1 N ARG D 157 O GLU D 164 SHEET 1 O 7 ARG D 108 GLU D 110 0 SHEET 2 O 7 ARG D 117 THR D 124 -1 O THR D 119 N GLU D 110 SHEET 3 O 7 GLU D 164 GLU D 173 -1 O TYR D 165 N THR D 124 SHEET 4 O 7 GLN D 144 CYS D 148 -1 N THR D 147 O GLN D 172 SHEET 5 O 7 LEU D 130 ARG D 138 -1 N ARG D 138 O GLN D 144 SHEET 6 O 7 ILE D 186 HIS D 194 -1 O ASP D 191 N SER D 133 SHEET 7 O 7 LYS D 197 PHE D 205 -1 O PHE D 205 N ILE D 186 SHEET 1 P 3 LYS D 217 LYS D 222 0 SHEET 2 P 3 VAL D 230 GLU D 235 -1 O GLU D 235 N LYS D 217 SHEET 3 P 3 SER D 273 VAL D 276 -1 O ALA D 274 N VAL D 232 SHEET 1 Q 4 ARG D 266 THR D 269 0 SHEET 2 Q 4 LEU D 249 GLN D 256 -1 N VAL D 253 O VAL D 267 SHEET 3 Q 4 SER D 283 ASP D 290 -1 O SER D 285 N GLN D 254 SHEET 4 Q 4 ALA D 301 PRO D 304 -1 O VAL D 303 N ILE D 284 SSBOND 1 CYS A 23 CYS A 88 1555 1555 2.05 SSBOND 2 CYS A 134 CYS A 194 1555 1555 2.04 SSBOND 3 CYS B 22 CYS B 96 1555 1555 2.05 SSBOND 4 CYS B 142 CYS B 198 1555 1555 2.04 SSBOND 5 CYS C 58 CYS C 70 1555 1555 2.03 SSBOND 6 CYS D 28 CYS D 68 1555 1555 2.04 SSBOND 7 CYS D 109 CYS D 120 1555 1555 2.04 SSBOND 8 CYS D 148 CYS D 171 1555 1555 2.04 SSBOND 9 CYS D 278 CYS D 305 1555 1555 2.03 CISPEP 1 SER A 7 PRO A 8 0 0.08 CISPEP 2 PHE A 94 PRO A 95 0 -5.35 CISPEP 3 TYR A 140 PRO A 141 0 6.54 CISPEP 4 SER B 134 GLY B 135 0 2.10 CISPEP 5 PHE B 148 PRO B 149 0 -6.44 CISPEP 6 GLU B 150 PRO B 151 0 7.65 CISPEP 7 GLU C 93 PRO C 94 0 -6.73 CISPEP 8 ALA D 19 PRO D 20 0 7.53 CISPEP 9 THR D 242 PRO D 243 0 -3.57 SITE 1 AC1 4 THR B 30 SER B 31 TYR B 54 HIS C 106 SITE 1 AC2 3 GLN A 155 LEU A 181 HIS A 189 CRYST1 75.386 62.091 107.261 90.00 97.44 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013265 0.000000 0.001732 0.00000 SCALE2 0.000000 0.016105 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009402 0.00000