PDB Short entry for 3D9P HEADER TRANSCRIPTION 27-MAY-08 3D9P TITLE SNAPSHOTS OF THE RNA PROCESSING FACTOR SCAF8 BOUND TO DIFFERENT TITLE 2 PHOSPHORYLATED FORMS OF THE CARBOXY-TERMINAL DOMAIN OF RNA-POLYMERASE TITLE 3 II COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-BINDING PROTEIN 16; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CTD INTERACTING DOMAIN OF SCAF8, UNP RESIDUES 1-136; COMPND 5 SYNONYM: RNA-BINDING MOTIF PROTEIN 16; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CTD-PEPTIDE; COMPND 10 CHAIN: Y, Z; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: MAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RBM16, KIAA1116; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28B; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: PEPTIDE DERIVED FROM THE CONSERVED REPEAT SEQUENCE IN SOURCE 13 RNA POLYMERASE II CTD KEYWDS SCAF8, RNA POLYMERASE II CTD INTERACTING DOMAIN, ARM REPEATS, KEYWDS 2 PHOSPHO-CTD, PHOSPHOPROTEIN, RNA-BINDING, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR R.BECKER,B.LOLL,A.MEINHART REVDAT 8 30-AUG-23 3D9P 1 REMARK REVDAT 7 20-OCT-21 3D9P 1 REMARK SEQADV LINK REVDAT 6 25-OCT-17 3D9P 1 REMARK REVDAT 5 13-JUL-11 3D9P 1 VERSN REVDAT 4 24-FEB-09 3D9P 1 VERSN REVDAT 3 19-AUG-08 3D9P 1 JRNL REVDAT 2 29-JUL-08 3D9P 1 JRNL REVDAT 1 10-JUN-08 3D9P 0 JRNL AUTH R.BECKER,B.LOLL,A.MEINHART JRNL TITL SNAPSHOTS OF THE RNA PROCESSING FACTOR SCAF8 BOUND TO JRNL TITL 2 DIFFERENT PHOSPHORYLATED FORMS OF THE CARBOXYL-TERMINAL JRNL TITL 3 DOMAIN OF RNA POLYMERASE II. JRNL REF J.BIOL.CHEM. V. 283 22659 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18550522 JRNL DOI 10.1074/JBC.M803540200 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 19235 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1011 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1400 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1800 REMARK 3 BIN FREE R VALUE SET COUNT : 75 REMARK 3 BIN FREE R VALUE : 0.2610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2365 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 172 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 34.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.04000 REMARK 3 B22 (A**2) : 1.04000 REMARK 3 B33 (A**2) : -2.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.214 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.187 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.125 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.823 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2542 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3463 ; 1.111 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 316 ; 4.639 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 114 ;36.615 ;25.088 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 478 ;14.051 ;15.094 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;14.305 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 376 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1853 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1195 ; 0.197 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1748 ; 0.302 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 171 ; 0.142 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 62 ; 0.173 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.086 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1553 ; 0.546 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2474 ; 0.879 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1112 ; 1.369 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 974 ; 2.125 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 139 REMARK 3 ORIGIN FOR THE GROUP (A): 44.7554 4.2239 16.6044 REMARK 3 T TENSOR REMARK 3 T11: -0.2128 T22: -0.2116 REMARK 3 T33: -0.1650 T12: -0.0180 REMARK 3 T13: -0.0087 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 3.4357 L22: 3.1196 REMARK 3 L33: 6.2315 L12: 0.1263 REMARK 3 L13: 1.3675 L23: -0.0660 REMARK 3 S TENSOR REMARK 3 S11: 0.0015 S12: -0.1663 S13: 0.2944 REMARK 3 S21: -0.1548 S22: -0.3196 S23: -0.0450 REMARK 3 S31: -0.0156 S32: 0.0948 S33: 0.3181 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 141 REMARK 3 ORIGIN FOR THE GROUP (A): 24.3671 14.7665 -9.7741 REMARK 3 T TENSOR REMARK 3 T11: -0.2313 T22: -0.2140 REMARK 3 T33: -0.1625 T12: -0.0266 REMARK 3 T13: -0.0090 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 1.9647 L22: 2.7206 REMARK 3 L33: 5.7883 L12: -0.3868 REMARK 3 L13: 0.4280 L23: 1.0038 REMARK 3 S TENSOR REMARK 3 S11: -0.0891 S12: 0.0010 S13: -0.1325 REMARK 3 S21: -0.0057 S22: 0.1417 S23: -0.1672 REMARK 3 S31: -0.0955 S32: -0.0590 S33: -0.0526 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : Z -1 Z 6 REMARK 3 ORIGIN FOR THE GROUP (A): 12.7920 7.7122 -7.5654 REMARK 3 T TENSOR REMARK 3 T11: -0.0577 T22: 0.5213 REMARK 3 T33: 0.3085 T12: -0.0725 REMARK 3 T13: -0.0474 T23: 0.0377 REMARK 3 L TENSOR REMARK 3 L11: 1.5753 L22: 74.3665 REMARK 3 L33: 62.8815 L12: -10.6214 REMARK 3 L13: 8.0262 L23: -61.8951 REMARK 3 S TENSOR REMARK 3 S11: -0.2034 S12: 0.3795 S13: -1.3617 REMARK 3 S21: 0.3259 S22: 2.3270 S23: 4.5076 REMARK 3 S31: -0.0222 S32: -4.9168 S33: -2.1236 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : Y 1 Y 3 REMARK 3 ORIGIN FOR THE GROUP (A): 33.6018 0.5275 15.3160 REMARK 3 T TENSOR REMARK 3 T11: 0.2870 T22: 0.2224 REMARK 3 T33: 0.1999 T12: -0.0428 REMARK 3 T13: -0.0345 T23: -0.0896 REMARK 3 L TENSOR REMARK 3 L11: 36.7275 L22: 84.7035 REMARK 3 L33: 154.6433 L12: -51.0369 REMARK 3 L13: 6.6164 L23: -42.7289 REMARK 3 S TENSOR REMARK 3 S11: 0.4424 S12: 1.7107 S13: -1.5754 REMARK 3 S21: 2.6604 S22: 1.6863 S23: 1.6477 REMARK 3 S31: -5.4531 S32: -3.9791 S33: -2.1286 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3D9P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1000047768. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9782 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20039 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.31000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC 5.2.0019 REMARK 200 STARTING MODEL: PDB ENTRY 3D9J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2 M LI2SO4, 1.6 M (NH4)2SO4, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.39500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 80.09250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.69750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, Z REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -75.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, Y REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 140 REMARK 465 HIS A 141 REMARK 465 HIS A 142 REMARK 465 HIS A 143 REMARK 465 HIS A 144 REMARK 465 HIS A 145 REMARK 465 HIS B 142 REMARK 465 HIS B 143 REMARK 465 HIS B 144 REMARK 465 HIS B 145 REMARK 465 TYR Y -6 REMARK 465 SEP Y -5 REMARK 465 PRO Y -4 REMARK 465 THR Y -3 REMARK 465 SEP Y -2 REMARK 465 PRO Y -1 REMARK 465 SER Y 0 REMARK 465 THR Y 4 REMARK 465 SEP Y 5 REMARK 465 PRO Y 6 REMARK 465 SER Y 7 REMARK 465 TYR Z -6 REMARK 465 SEP Z -5 REMARK 465 PRO Z -4 REMARK 465 THR Z -3 REMARK 465 SEP Z -2 REMARK 465 SER Z 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 146 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 146 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 147 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 148 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 147 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 148 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 149 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 149 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 150 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 151 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1SZ9 RELATED DB: PDB REMARK 900 THE RNA POLYMERASE II CTD IN MRNA PROCESSING: BETA-TURN RECOGNITION REMARK 900 AND BETA-SPIRAL MODEL REMARK 900 RELATED ID: 1SZA RELATED DB: PDB REMARK 900 THE RNA POLYMERASE II CTD IN MRNA PROCESSING: BETA-TURN RECOGNITION REMARK 900 AND BETA-SPIRAL MODEL REMARK 900 RELATED ID: 2BF0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE RPR OF PCF11 REMARK 900 RELATED ID: 3CLJ RELATED DB: PDB REMARK 900 STRUCTURE OF THE RNA POLYMERASE II CTD-INTERACTING DOMAIN OF NRD1 REMARK 900 RELATED ID: 6404 RELATED DB: BMRB REMARK 900 BACKBONE ASSIGNMENT OF PCF11 CTD BINDING DOMAIN REMARK 900 RELATED ID: 3D9I RELATED DB: PDB REMARK 900 SNAPSHOTS OF THE RNA PROCESSING FACTOR SCAF8 BOUND TO DIFFERENT REMARK 900 PHOSPHORYLATED FORMS OF THE CARBOXY-TERMINAL DOMAIN OF RNA- REMARK 900 POLYMERASE II REMARK 900 RELATED ID: 3D9J RELATED DB: PDB REMARK 900 SNAPSHOTS OF THE RNA PROCESSING FACTOR SCAF8 BOUND TO DIFFERENT REMARK 900 PHOSPHORYLATED FORMS OF THE CARBOXY-TERMINAL DOMAIN OF RNA- REMARK 900 POLYMERASE II REMARK 900 RELATED ID: 3D9K RELATED DB: PDB REMARK 900 SNAPSHOTS OF THE RNA PROCESSING FACTOR SCAF8 BOUND TO DIFFERENT REMARK 900 PHOSPHORYLATED FORMS OF THE CARBOXY-TERMINAL DOMAIN OF RNA- REMARK 900 POLYMERASE II (CTD PHOSPHORYLATED AT SER2 AND SER5) REMARK 900 RELATED ID: 3D9L RELATED DB: PDB REMARK 900 SNAPSHOTS OF THE RNA PROCESSING FACTOR SCAF8 BOUND TO DIFFERENT REMARK 900 PHOSPHORYLATED FORMS OF THE CARBOXY-TERMINAL DOMAIN OF RNA- REMARK 900 POLYMERASE II (CTD PHOSPHORYLATED AT SER2) REMARK 900 RELATED ID: 3D9M RELATED DB: PDB REMARK 900 SNAPSHOTS OF THE RNA PROCESSING FACTOR SCAF8 BOUND TO DIFFERENT REMARK 900 PHOSPHORYLATED FORMS OF THE CARBOXY-TERMINAL DOMAIN OF RNA- REMARK 900 POLYMERASE II (CTD PHOSPHORYLATED AT SER5) REMARK 900 RELATED ID: 3D9N RELATED DB: PDB REMARK 900 SNAPSHOTS OF THE RNA PROCESSING FACTOR SCAF8 BOUND TO DIFFERENT REMARK 900 PHOSPHORYLATED FORMS OF THE CARBOXY-TERMINAL DOMAIN OF RNA- REMARK 900 POLYMERASE II (CTD PHOSPHORYLATED AT SER2 AND SER7) REMARK 900 RELATED ID: 3D9O RELATED DB: PDB REMARK 900 SNAPSHOTS OF THE RNA PROCESSING FACTOR SCAF8 BOUND TO DIFFERENT REMARK 900 PHOSPHORYLATED FORMS OF THE CARBOXY-TERMINAL DOMAIN OF RNA- REMARK 900 POLYMERASE II (CTD UNPHOSPHORYLATED) DBREF 3D9P A 1 136 UNP Q9UPN6 RBM16_HUMAN 1 136 DBREF 3D9P B 1 136 UNP Q9UPN6 RBM16_HUMAN 1 136 DBREF 3D9P Y -6 7 PDB 3D9P 3D9P -6 7 DBREF 3D9P Z -6 7 PDB 3D9P 3D9P -6 7 SEQADV 3D9P THR A 112 UNP Q9UPN6 ARG 112 ENGINEERED MUTATION SEQADV 3D9P ALA A 137 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9P LEU A 138 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9P GLU A 139 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9P HIS A 140 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9P HIS A 141 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9P HIS A 142 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9P HIS A 143 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9P HIS A 144 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9P HIS A 145 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9P THR B 112 UNP Q9UPN6 ARG 112 ENGINEERED MUTATION SEQADV 3D9P ALA B 137 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9P LEU B 138 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9P GLU B 139 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9P HIS B 140 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9P HIS B 141 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9P HIS B 142 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9P HIS B 143 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9P HIS B 144 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9P HIS B 145 UNP Q9UPN6 EXPRESSION TAG SEQRES 1 A 145 MET GLU ALA VAL LYS THR PHE ASN SER GLU LEU TYR SER SEQRES 2 A 145 LEU ASN ASP TYR LYS PRO PRO ILE SER LYS ALA LYS MET SEQRES 3 A 145 THR GLN ILE THR LYS ALA ALA ILE LYS ALA ILE LYS PHE SEQRES 4 A 145 TYR LYS HIS VAL VAL GLN SER VAL GLU LYS PHE ILE GLN SEQRES 5 A 145 LYS CYS LYS PRO GLU TYR LYS VAL PRO GLY LEU TYR VAL SEQRES 6 A 145 ILE ASP SER ILE VAL ARG GLN SER ARG HIS GLN PHE GLY SEQRES 7 A 145 GLN GLU LYS ASP VAL PHE ALA PRO ARG PHE SER ASN ASN SEQRES 8 A 145 ILE ILE SER THR PHE GLN ASN LEU TYR ARG CYS PRO GLY SEQRES 9 A 145 ASP ASP LYS SER LYS ILE VAL THR VAL LEU ASN LEU TRP SEQRES 10 A 145 GLN LYS ASN ASN VAL PHE LYS SER GLU ILE ILE GLN PRO SEQRES 11 A 145 LEU LEU ASP MET ALA ALA ALA LEU GLU HIS HIS HIS HIS SEQRES 12 A 145 HIS HIS SEQRES 1 B 145 MET GLU ALA VAL LYS THR PHE ASN SER GLU LEU TYR SER SEQRES 2 B 145 LEU ASN ASP TYR LYS PRO PRO ILE SER LYS ALA LYS MET SEQRES 3 B 145 THR GLN ILE THR LYS ALA ALA ILE LYS ALA ILE LYS PHE SEQRES 4 B 145 TYR LYS HIS VAL VAL GLN SER VAL GLU LYS PHE ILE GLN SEQRES 5 B 145 LYS CYS LYS PRO GLU TYR LYS VAL PRO GLY LEU TYR VAL SEQRES 6 B 145 ILE ASP SER ILE VAL ARG GLN SER ARG HIS GLN PHE GLY SEQRES 7 B 145 GLN GLU LYS ASP VAL PHE ALA PRO ARG PHE SER ASN ASN SEQRES 8 B 145 ILE ILE SER THR PHE GLN ASN LEU TYR ARG CYS PRO GLY SEQRES 9 B 145 ASP ASP LYS SER LYS ILE VAL THR VAL LEU ASN LEU TRP SEQRES 10 B 145 GLN LYS ASN ASN VAL PHE LYS SER GLU ILE ILE GLN PRO SEQRES 11 B 145 LEU LEU ASP MET ALA ALA ALA LEU GLU HIS HIS HIS HIS SEQRES 12 B 145 HIS HIS SEQRES 1 Y 14 TYR SEP PRO THR SEP PRO SER TYR SEP PRO THR SEP PRO SEQRES 2 Y 14 SER SEQRES 1 Z 14 TYR SEP PRO THR SEP PRO SER TYR SEP PRO THR SEP PRO SEQRES 2 Z 14 SER MODRES 3D9P SEP Y 2 SER PHOSPHOSERINE MODRES 3D9P SEP Z 2 SER PHOSPHOSERINE MODRES 3D9P SEP Z 5 SER PHOSPHOSERINE HET SEP Y 2 10 HET SEP Z 2 10 HET SEP Z 5 10 HET SO4 A 146 5 HET SO4 A 147 5 HET SO4 A 148 5 HET SO4 A 149 5 HET SO4 A 150 5 HET SO4 A 151 5 HET SO4 B 146 5 HET SO4 B 147 5 HET SO4 B 148 5 HET SO4 B 149 5 HETNAM SEP PHOSPHOSERINE HETNAM SO4 SULFATE ION HETSYN SEP PHOSPHONOSERINE FORMUL 3 SEP 3(C3 H8 N O6 P) FORMUL 5 SO4 10(O4 S 2-) FORMUL 15 HOH *172(H2 O) HELIX 1 1 GLU A 2 SER A 13 1 12 HELIX 2 2 LEU A 14 TYR A 17 5 4 HELIX 3 3 SER A 22 ALA A 36 1 15 HELIX 4 4 PHE A 39 CYS A 54 1 16 HELIX 5 5 LYS A 55 GLU A 57 5 3 HELIX 6 6 TYR A 58 GLY A 78 1 21 HELIX 7 7 VAL A 83 ASN A 90 1 8 HELIX 8 8 ASN A 91 TYR A 100 1 10 HELIX 9 9 ARG A 101 CYS A 102 5 2 HELIX 10 10 PRO A 103 ASP A 105 5 3 HELIX 11 11 ASP A 106 ASN A 120 1 15 HELIX 12 12 LYS A 124 GLU A 139 1 16 HELIX 13 13 MET B 1 SER B 13 1 13 HELIX 14 14 LEU B 14 TYR B 17 5 4 HELIX 15 15 SER B 22 ALA B 36 1 15 HELIX 16 16 PHE B 39 CYS B 54 1 16 HELIX 17 17 LYS B 55 GLU B 57 5 3 HELIX 18 18 TYR B 58 GLY B 78 1 21 HELIX 19 19 VAL B 83 ASN B 90 1 8 HELIX 20 20 ASN B 91 TYR B 100 1 10 HELIX 21 21 ARG B 101 CYS B 102 5 2 HELIX 22 22 PRO B 103 ASP B 105 5 3 HELIX 23 23 ASP B 106 ASN B 120 1 15 HELIX 24 24 LYS B 124 HIS B 141 1 18 LINK C TYR Y 1 N SEP Y 2 1555 1555 1.33 LINK C SEP Y 2 N PRO Y 3 1555 1555 1.35 LINK C TYR Z 1 N SEP Z 2 1555 1555 1.33 LINK C SEP Z 2 N PRO Z 3 1555 1555 1.35 LINK C THR Z 4 N SEP Z 5 1555 1555 1.33 LINK C SEP Z 5 N PRO Z 6 1555 1555 1.35 CISPEP 1 PRO A 19 PRO A 20 0 5.87 CISPEP 2 PRO B 19 PRO B 20 0 5.20 SITE 1 AC1 2 ARG B 71 PRO Z 6 SITE 1 AC2 3 LEU A 116 ASN A 120 HIS B 140 SITE 1 AC3 2 LYS B 41 ARG B 87 SITE 1 AC4 3 TYR B 40 ARG B 87 ASN B 90 SITE 1 AC5 4 TYR A 40 LYS A 41 ARG A 87 ASN A 90 SITE 1 AC6 2 LYS A 41 ARG A 87 SITE 1 AC7 5 GLN A 118 SER A 125 GLN A 129 THR B 112 SITE 2 AC7 5 ASN B 115 SITE 1 AC8 2 LYS A 124 SER A 125 SITE 1 AC9 4 PRO A 20 TYR A 64 LYS A 109 TYR Y 1 SITE 1 BC1 4 LYS A 25 GLN A 28 TYR B 12 LYS B 53 CRYST1 57.520 57.520 106.790 90.00 90.00 90.00 P 43 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017385 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017385 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009364 0.00000