PDB Short entry for 3DB8 HEADER TRANSFERASE 30-MAY-08 3DB8 TITLE CRYSTAL STRUCTURE OF AN ACTIVATED (THR->ASP) POLO-LIKE KINASE 1 (PLK1) TITLE 2 CATALYTIC DOMAIN IN COMPLEX WITH COMPOUND 041 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLO-LIKE KINASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PLK1 KINASE DOMAIN; COMPND 5 EC: 2.7.11.21; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRA FISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: PLK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) STAR CODON+; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX6P-1 KEYWDS POLO-LIKE KINASE 1, PLK1, CATALYTIC DOMAIN, SMALL-MOLECULE INHIBITOR, KEYWDS 2 KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.A.ELLING,E.J.HANAN,W.LEW,M.J.ROMANOWSKI REVDAT 4 30-AUG-23 3DB8 1 REMARK REVDAT 3 20-OCT-21 3DB8 1 REMARK SEQADV REVDAT 2 24-FEB-09 3DB8 1 VERSN REVDAT 1 07-OCT-08 3DB8 0 JRNL AUTH E.J.HANAN,R.V.FUCINI,M.J.ROMANOWSKI,R.A.ELLING,W.LEW, JRNL AUTH 2 H.E.PURKEY,E.C.VANDERPORTEN,W.YANG JRNL TITL DESIGN AND SYNTHESIS OF 2-AMINO-ISOXAZOLOPYRIDINES AS JRNL TITL 2 POLO-LIKE KINASE INHIBITORS. JRNL REF BIOORG.MED.CHEM.LETT. V. 18 5186 2008 JRNL REFN ISSN 0960-894X JRNL PMID 18790636 JRNL DOI 10.1016/J.BMCL.2008.08.091 REMARK 2 REMARK 2 RESOLUTION. 3.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 6190 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 12.600 REMARK 3 FREE R VALUE TEST SET COUNT : 892 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 608 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.3070 REMARK 3 BIN FREE R VALUE SET COUNT : 80 REMARK 3 BIN FREE R VALUE : 0.3750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2081 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.530 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.371 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.684 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.902 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.860 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2161 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2923 ; 0.987 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 259 ; 4.200 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 93 ;31.335 ;22.796 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 378 ;15.667 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;10.930 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 324 ; 0.058 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1618 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 962 ; 0.181 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1478 ; 0.300 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 59 ; 0.137 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 25 ; 0.145 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.204 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1341 ; 1.658 ; 2.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2120 ; 2.861 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 932 ; 1.233 ; 2.500 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 803 ; 2.091 ; 5.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3DB8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000047821. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : 160 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : SIDE-SCATTERING CUBE ROOT I-BEAM REMARK 200 BENT SINGLE CRYSTAL; ASYMMETRIC REMARK 200 CUT 12.2 DEGS. CRYSTAL TYPE: REMARK 200 SI(311) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7096 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.150 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.39100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3D5W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING-DROP VAPOR DIFFUSION AT 4 C REMARK 280 (277K); PROTEIN AT 7 MG/ML IN 50 MM TRIS-HCL PH 7.5, 200 MM NACL REMARK 280 AND 3 MM DTT; CRYSTALLIZATION CONDITION: 0.1 M HEPES PH 7.5, 0.2 REMARK 280 M (NH4)2SO4, 22.5% PEG 3350, AND 15% GLYCEROL; CRYOPROTECTANT: REMARK 280 15% ETHYLENE GLYCOL., VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 67.55900 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 67.55900 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 67.55900 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 67.55900 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 67.55900 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 67.55900 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 67.55900 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 67.55900 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 67.55900 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 67.55900 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 67.55900 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 67.55900 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 67.55900 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 67.55900 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 67.55900 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 67.55900 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 67.55900 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 67.55900 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 67.55900 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 67.55900 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 67.55900 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 67.55900 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 67.55900 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 67.55900 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 67.55900 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 67.55900 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 67.55900 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 67.55900 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 67.55900 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 67.55900 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 67.55900 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 67.55900 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 67.55900 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 67.55900 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 67.55900 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 67.55900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 LEU A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 ILE A 5 REMARK 465 ALA A 6 REMARK 465 LYS A 7 REMARK 465 PRO A 8 REMARK 465 SER A 9 REMARK 465 ALA A 10 REMARK 465 LYS A 11 REMARK 465 PRO A 12 REMARK 465 SER A 13 REMARK 465 ALA A 14 REMARK 465 HIS A 15 REMARK 465 VAL A 16 REMARK 465 ASP A 17 REMARK 465 PRO A 18 REMARK 465 LYS A 19 REMARK 465 SER A 20 REMARK 465 ALA A 21 REMARK 465 PRO A 22 REMARK 465 LEU A 23 REMARK 465 GLU A 188 REMARK 465 PHE A 189 REMARK 465 ASP A 190 REMARK 465 GLY A 191 REMARK 465 GLU A 192 REMARK 465 ARG A 193 REMARK 465 LYS A 194 REMARK 465 LYS A 195 REMARK 465 ASP A 196 REMARK 465 LEU A 197 REMARK 465 CYS A 198 REMARK 465 GLY A 199 REMARK 465 THR A 200 REMARK 465 PRO A 201 REMARK 465 ASN A 202 REMARK 465 TYR A 203 REMARK 465 ILE A 204 REMARK 465 ALA A 205 REMARK 465 PRO A 206 REMARK 465 GLU A 207 REMARK 465 VAL A 208 REMARK 465 LEU A 209 REMARK 465 CYS A 210 REMARK 465 LYS A 211 REMARK 465 LYS A 212 REMARK 465 GLY A 213 REMARK 465 PHE A 311 REMARK 465 SER A 312 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 34 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 38 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 50 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 MET A 74 CG SD CE REMARK 470 LYS A 81 CG CD CE NZ REMARK 470 LYS A 92 CD CE NZ REMARK 470 ARG A 157 CD NE CZ NH1 NH2 REMARK 470 LYS A 234 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 34 -83.10 -68.43 REMARK 500 PRO A 97 6.68 -61.20 REMARK 500 PHE A 106 -172.54 -170.80 REMARK 500 ASP A 108 -169.31 -111.76 REMARK 500 ARG A 122 -156.65 54.73 REMARK 500 LYS A 132 -125.90 54.94 REMARK 500 ARG A 161 -18.96 69.14 REMARK 500 ASP A 180 81.89 60.33 REMARK 500 SER A 215 -132.48 -146.91 REMARK 500 THR A 306 -41.67 -130.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1FR A 313 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3D5W RELATED DB: PDB REMARK 900 RELATED ID: 3DB6 RELATED DB: PDB REMARK 900 RELATED ID: 3DBC RELATED DB: PDB REMARK 900 RELATED ID: 3DBD RELATED DB: PDB REMARK 900 RELATED ID: 3DBE RELATED DB: PDB REMARK 900 RELATED ID: 3DBF RELATED DB: PDB DBREF 3DB8 A 1 312 UNP Q4KMI8 Q4KMI8_DANRE 1 312 SEQADV 3DB8 GLY A -4 UNP Q4KMI8 EXPRESSION TAG SEQADV 3DB8 PRO A -3 UNP Q4KMI8 EXPRESSION TAG SEQADV 3DB8 LEU A -2 UNP Q4KMI8 EXPRESSION TAG SEQADV 3DB8 GLY A -1 UNP Q4KMI8 EXPRESSION TAG SEQADV 3DB8 SER A 0 UNP Q4KMI8 EXPRESSION TAG SEQADV 3DB8 ASP A 196 UNP Q4KMI8 THR 196 ENGINEERED MUTATION SEQRES 1 A 317 GLY PRO LEU GLY SER MET SER ALA ALA ILE ALA LYS PRO SEQRES 2 A 317 SER ALA LYS PRO SER ALA HIS VAL ASP PRO LYS SER ALA SEQRES 3 A 317 PRO LEU LYS GLU ILE PRO ASP VAL LEU VAL ASP PRO ARG SEQRES 4 A 317 THR MET LYS ARG TYR MET ARG GLY ARG PHE LEU GLY LYS SEQRES 5 A 317 GLY GLY PHE ALA LYS CYS TYR GLU ILE THR ASP MET ASP SEQRES 6 A 317 THR LYS GLU VAL PHE ALA GLY LYS VAL VAL PRO LYS SER SEQRES 7 A 317 MET LEU LEU LYS PRO HIS GLN LYS GLU LYS MET SER THR SEQRES 8 A 317 GLU ILE ALA ILE HIS LYS SER LEU ASP ASN PRO HIS VAL SEQRES 9 A 317 VAL GLY PHE HIS GLY PHE PHE GLU ASP ASP ASP PHE VAL SEQRES 10 A 317 TYR VAL VAL LEU GLU ILE CYS ARG ARG ARG SER LEU LEU SEQRES 11 A 317 GLU LEU HIS LYS ARG ARG LYS ALA VAL THR GLU PRO GLU SEQRES 12 A 317 ALA ARG TYR PHE MET ARG GLN THR ILE GLN GLY VAL GLN SEQRES 13 A 317 TYR LEU HIS ASN ASN ARG VAL ILE HIS ARG ASP LEU LYS SEQRES 14 A 317 LEU GLY ASN LEU PHE LEU ASN ASP ASP MET ASP VAL LYS SEQRES 15 A 317 ILE GLY ASP PHE GLY LEU ALA THR LYS ILE GLU PHE ASP SEQRES 16 A 317 GLY GLU ARG LYS LYS ASP LEU CYS GLY THR PRO ASN TYR SEQRES 17 A 317 ILE ALA PRO GLU VAL LEU CYS LYS LYS GLY HIS SER PHE SEQRES 18 A 317 GLU VAL ASP ILE TRP SER LEU GLY CYS ILE LEU TYR THR SEQRES 19 A 317 LEU LEU VAL GLY LYS PRO PRO PHE GLU THR SER CYS LEU SEQRES 20 A 317 LYS GLU THR TYR ILE ARG ILE LYS LYS ASN GLU TYR SER SEQRES 21 A 317 VAL PRO ARG HIS ILE ASN PRO VAL ALA SER ALA LEU ILE SEQRES 22 A 317 ARG ARG MET LEU HIS ALA ASP PRO THR LEU ARG PRO SER SEQRES 23 A 317 VAL ALA GLU LEU LEU THR ASP GLU PHE PHE THR SER GLY SEQRES 24 A 317 TYR ALA PRO MET ARG LEU PRO THR SER CYS LEU THR VAL SEQRES 25 A 317 PRO PRO ARG PHE SER HET 1FR A 313 29 HETNAM 1FR 3-[3-CHLORO-5-(5-{[(1S)-1- HETNAM 2 1FR PHENYLETHYL]AMINO}ISOXAZOLO[5,4-C]PYRIDIN-3-YL) HETNAM 3 1FR PHENYL]PROPAN-1-OL HETSYN 1FR 3-{3-CHLORO-5-[5-(1-PHENYL-ETHYLAMINO)-ISOXAZOLO[5,4- HETSYN 2 1FR C]PYRIDIN-3-YL]-PHENYL}-PROPAN-1-OL FORMUL 2 1FR C23 H22 CL N3 O2 HELIX 1 1 HIS A 79 LEU A 94 1 16 HELIX 2 2 SER A 123 LYS A 132 1 10 HELIX 3 3 THR A 135 ASN A 156 1 22 HELIX 4 4 PHE A 216 GLY A 233 1 18 HELIX 5 5 CYS A 241 LYS A 251 1 11 HELIX 6 6 ASN A 261 LEU A 272 1 12 HELIX 7 7 ASP A 275 ARG A 279 5 5 HELIX 8 8 SER A 281 THR A 287 1 7 HELIX 9 9 ASP A 288 GLY A 294 1 7 HELIX 10 10 PRO A 301 THR A 306 5 6 SHEET 1 A 6 VAL A 29 VAL A 31 0 SHEET 2 A 6 ARG A 38 GLY A 48 -1 O TYR A 39 N LEU A 30 SHEET 3 A 6 ALA A 51 ASP A 58 -1 O ALA A 51 N GLY A 48 SHEET 4 A 6 VAL A 64 PRO A 71 -1 O PHE A 65 N ILE A 56 SHEET 5 A 6 PHE A 111 LEU A 116 -1 O VAL A 112 N VAL A 70 SHEET 6 A 6 PHE A 102 GLU A 107 -1 N PHE A 106 O TYR A 113 SHEET 1 B 2 VAL A 158 ILE A 159 0 SHEET 2 B 2 THR A 185 LYS A 186 -1 O THR A 185 N ILE A 159 SHEET 1 C 2 LEU A 168 LEU A 170 0 SHEET 2 C 2 VAL A 176 ILE A 178 -1 O LYS A 177 N PHE A 169 SITE 1 AC1 10 LEU A 45 LYS A 47 ALA A 51 CYS A 53 SITE 2 AC1 10 ALA A 66 GLU A 117 CYS A 119 ARG A 122 SITE 3 AC1 10 SER A 123 PHE A 169 CRYST1 135.118 135.118 135.118 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007401 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007401 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007401 0.00000