PDB Short entry for 3DDC HEADER HYDROLASE/APOPTOSIS 05-JUN-08 3DDC TITLE CRYSTAL STRUCTURE OF NORE1A IN COMPLEX WITH RAS COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE HRAS; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-166; COMPND 5 SYNONYM: TRANSFORMING PROTEIN P21, P21RAS, H-RAS-1, C-H-RAS, HA-RAS; COMPND 6 EC: 3.6.5.2; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: RAS ASSOCIATION DOMAIN-CONTAINING FAMILY PROTEIN 5; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: RAS BINDING DOMAIN, UNP RESIDUES 200-358; COMPND 13 SYNONYM: NEW RAS EFFECTOR 1, REGULATOR FOR CELL ADHESION AND COMPND 14 POLARIZATION ENRICHED IN LYMPHOID TISSUES, RAPL, EFFECTOR PROTEIN COMPND 15 NORE1A; COMPND 16 ENGINEERED: YES; COMPND 17 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HRAS, HRAS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: CK600K; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTAC; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 13 ORGANISM_COMMON: MOUSE; SOURCE 14 ORGANISM_TAXID: 10090; SOURCE 15 GENE: RASSF5, NORE1, RAPL; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PGEX4T1 KEYWDS ONCOGENE, TUMORSUPPRESSOR, UBIQUITIN FOLD, RAS EFFECTOR, RAP1, H-RAS, KEYWDS 2 RASSF1, RASSF5, RAPL, NORE1, GMPPNP, ADAPTOR, APOPTOSIS, KEYWDS 3 MICROTUBULES, HYDROLASE-APOPTOSIS COMPLEX, DISEASE MUTATION, GOLGI KEYWDS 4 APPARATUS, GTP-BINDING, LIPOPROTEIN, MEMBRANE, METHYLATION, KEYWDS 5 NUCLEOTIDE-BINDING, PALMITATE, PRENYLATION, PROTO-ONCOGENE, ANTI- KEYWDS 6 ONCOGENE, CELL CYCLE, METAL-BINDING, MICROTUBULE, PHORBOL-ESTER KEYWDS 7 BINDING, ZINC-FINGER EXPDTA X-RAY DIFFRACTION AUTHOR B.STIEGLITZ,C.BEE,D.SCHWARZ,O.YILDIZ,A.MOSHNIKOVA,A.KHOKHLATCHEV, AUTHOR 2 C.HERRMANN REVDAT 5 20-JUL-11 3DDC 1 REMARK REVDAT 4 13-JUL-11 3DDC 1 VERSN REVDAT 3 24-FEB-09 3DDC 1 VERSN REVDAT 2 12-AUG-08 3DDC 1 JRNL REVDAT 1 15-JUL-08 3DDC 0 JRNL AUTH B.STIEGLITZ,C.BEE,D.SCHWARZ,O.YILDIZ,A.MOSHNIKOVA, JRNL AUTH 2 A.KHOKHLATCHEV,C.HERRMANN JRNL TITL NOVEL TYPE OF RAS EFFECTOR INTERACTION ESTABLISHED BETWEEN JRNL TITL 2 TUMOUR SUPPRESSOR NORE1A AND RAS SWITCH II JRNL REF EMBO J. V. 27 1995 2008 JRNL REFN ISSN 0261-4189 JRNL PMID 18596699 JRNL DOI 10.1038/EMBOJ.2008.125 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 29320 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1466 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1912 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 100 REMARK 3 BIN FREE R VALUE : 0.3590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2394 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 115 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 30.52 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.05000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.03000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.134 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.127 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.083 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.765 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2469 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3338 ; 1.456 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 296 ; 5.847 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 114 ;38.646 ;24.298 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 452 ;14.958 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;20.846 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 378 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1814 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1044 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1679 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 144 ; 0.131 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 48 ; 0.217 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.196 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1530 ; 1.041 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2413 ; 1.709 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1059 ; 2.610 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 925 ; 4.001 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 200 B 247 REMARK 3 RESIDUE RANGE : B 274 B 356 REMARK 3 ORIGIN FOR THE GROUP (A): 8.1870 29.7790 14.8380 REMARK 3 T TENSOR REMARK 3 T11: -0.0088 T22: -0.0227 REMARK 3 T33: -0.0191 T12: -0.0096 REMARK 3 T13: -0.0008 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 1.3488 L22: 0.5121 REMARK 3 L33: 0.4181 L12: -0.6426 REMARK 3 L13: 0.5749 L23: -0.1375 REMARK 3 S TENSOR REMARK 3 S11: 0.0017 S12: 0.0375 S13: -0.0313 REMARK 3 S21: -0.0026 S22: -0.0101 S23: 0.0088 REMARK 3 S31: 0.0586 S32: -0.0820 S33: 0.0083 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 166 REMARK 3 ORIGIN FOR THE GROUP (A): 25.4170 44.7230 0.0820 REMARK 3 T TENSOR REMARK 3 T11: -0.0149 T22: -0.0213 REMARK 3 T33: -0.0038 T12: 0.0032 REMARK 3 T13: 0.0002 T23: 0.0336 REMARK 3 L TENSOR REMARK 3 L11: 0.4639 L22: 0.4517 REMARK 3 L33: 1.0356 L12: -0.1170 REMARK 3 L13: 0.1793 L23: -0.4877 REMARK 3 S TENSOR REMARK 3 S11: -0.0123 S12: 0.0539 S13: 0.0352 REMARK 3 S21: 0.0559 S22: -0.0721 S23: -0.0696 REMARK 3 S31: -0.0798 S32: 0.0899 S33: 0.0844 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3DDC COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-JUN-08. REMARK 100 THE RCSB ID CODE IS RCSB047896. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29894 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 19.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.6400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.34800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 5P21 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM C2H3NAO2, 20% PEG 2000, 250MM REMARK 280 (NH4)2SO4, 10MM DTE, PH 4.50, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 39.80000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 39.80000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 44.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 47.19293 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 46.28209 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 195 REMARK 465 SER B 196 REMARK 465 PRO B 197 REMARK 465 GLU B 198 REMARK 465 PHE B 199 REMARK 465 ALA B 249 REMARK 465 GLY B 250 REMARK 465 ILE B 251 REMARK 465 ARG B 252 REMARK 465 PRO B 253 REMARK 465 GLN B 254 REMARK 465 SER B 255 REMARK 465 ILE B 256 REMARK 465 TYR B 257 REMARK 465 ASP B 258 REMARK 465 ALA B 259 REMARK 465 ILE B 260 REMARK 465 LYS B 261 REMARK 465 GLU B 262 REMARK 465 VAL B 263 REMARK 465 ASN B 264 REMARK 465 PRO B 265 REMARK 465 ALA B 266 REMARK 465 ALA B 267 REMARK 465 THR B 268 REMARK 465 THR B 269 REMARK 465 ASP B 270 REMARK 465 LYS B 271 REMARK 465 ARG B 272 REMARK 465 THR B 273 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 63 O HOH A 638 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 36 -65.37 -90.16 REMARK 500 ASP A 108 35.32 -146.45 REMARK 500 LYS A 117 30.77 70.82 REMARK 500 ARG A 149 -2.67 82.10 REMARK 500 SER B 226 -156.57 -122.89 REMARK 500 VAL B 247 -163.35 -79.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 600 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 THR A 35 OG1 83.5 REMARK 620 3 GNP A 500 O2G 170.3 86.9 REMARK 620 4 GNP A 500 O2B 94.3 175.5 95.3 REMARK 620 5 HOH A 603 O 86.9 87.9 91.6 88.1 REMARK 620 6 HOH A 602 O 88.9 91.2 92.5 92.7 175.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP A 500 DBREF 3DDC A 1 166 UNP P01112 RASH_HUMAN 1 166 DBREF 3DDC B 200 357 UNP Q5EBH1 RASF5_MOUSE 200 357 SEQADV 3DDC GLU A 30 UNP P01112 ASP 30 ENGINEERED MUTATION SEQADV 3DDC LYS A 31 UNP P01112 GLU 31 ENGINEERED MUTATION SEQADV 3DDC GLY B 195 UNP Q5EBH1 EXPRESSION TAG SEQADV 3DDC SER B 196 UNP Q5EBH1 EXPRESSION TAG SEQADV 3DDC PRO B 197 UNP Q5EBH1 EXPRESSION TAG SEQADV 3DDC GLU B 198 UNP Q5EBH1 EXPRESSION TAG SEQADV 3DDC PHE B 199 UNP Q5EBH1 EXPRESSION TAG SEQADV 3DDC MET B 285 UNP Q5EBH1 LEU 285 ENGINEERED MUTATION SEQADV 3DDC ASP B 302 UNP Q5EBH1 LYS 302 ENGINEERED MUTATION SEQRES 1 A 166 MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY GLY SEQRES 2 A 166 VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN ASN SEQRES 3 A 166 HIS PHE VAL GLU LYS TYR ASP PRO THR ILE GLU ASP SER SEQRES 4 A 166 TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS LEU SEQRES 5 A 166 LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SER SEQRES 6 A 166 ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY PHE SEQRES 7 A 166 LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE GLU SEQRES 8 A 166 ASP ILE HIS GLN TYR ARG GLU GLN ILE LYS ARG VAL LYS SEQRES 9 A 166 ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN LYS SEQRES 10 A 166 CYS ASP LEU ALA ALA ARG THR VAL GLU SER ARG GLN ALA SEQRES 11 A 166 GLN ASP LEU ALA ARG SER TYR GLY ILE PRO TYR ILE GLU SEQRES 12 A 166 THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA PHE SEQRES 13 A 166 TYR THR LEU VAL ARG GLU ILE ARG GLN HIS SEQRES 1 B 163 GLY SER PRO GLU PHE PRO PRO THR ILE GLN GLU ILE LYS SEQRES 2 B 163 GLN LYS ILE ASP SER TYR ASN SER ARG GLU LYS HIS CYS SEQRES 3 B 163 LEU GLY MET LYS LEU SER GLU ASP GLY THR TYR THR GLY SEQRES 4 B 163 PHE ILE LYS VAL HIS LEU LYS LEU ARG ARG PRO VAL THR SEQRES 5 B 163 VAL PRO ALA GLY ILE ARG PRO GLN SER ILE TYR ASP ALA SEQRES 6 B 163 ILE LYS GLU VAL ASN PRO ALA ALA THR THR ASP LYS ARG SEQRES 7 B 163 THR SER PHE TYR LEU PRO LEU ASP ALA ILE LYS GLN MET SEQRES 8 B 163 HIS ILE SER SER THR THR THR VAL SER GLU VAL ILE GLN SEQRES 9 B 163 GLY LEU LEU ASP LYS PHE MET VAL VAL ASP ASN PRO GLN SEQRES 10 B 163 LYS PHE ALA LEU PHE LYS ARG ILE HIS LYS ASP GLY GLN SEQRES 11 B 163 VAL LEU PHE GLN LYS LEU SER ILE ALA ASP TYR PRO LEU SEQRES 12 B 163 TYR LEU ARG LEU LEU ALA GLY PRO ASP THR ASP VAL LEU SEQRES 13 B 163 SER PHE VAL LEU LYS GLU ASN HET MG A 600 1 HET GNP A 500 32 HETNAM MG MAGNESIUM ION HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER FORMUL 3 MG MG 2+ FORMUL 4 GNP C10 H17 N6 O13 P3 FORMUL 5 HOH *115(H2 O) HELIX 1 1 GLY A 15 ASN A 26 1 12 HELIX 2 2 GLN A 61 ALA A 66 5 6 HELIX 3 3 MET A 67 GLY A 75 1 9 HELIX 4 4 ASN A 86 ASP A 92 1 7 HELIX 5 5 ASP A 92 ASP A 105 1 14 HELIX 6 6 GLU A 126 GLY A 138 1 13 HELIX 7 7 GLY A 151 GLN A 165 1 15 HELIX 8 8 THR B 202 ARG B 216 1 15 HELIX 9 9 GLU B 217 GLY B 222 5 6 HELIX 10 10 GLU B 227 GLY B 229 5 3 HELIX 11 11 THR B 292 PHE B 304 1 13 HELIX 12 12 ASN B 309 GLN B 311 5 3 HELIX 13 13 TYR B 335 GLY B 344 1 10 SHEET 1 A 9 TYR A 141 GLU A 143 0 SHEET 2 A 9 MET A 111 ASN A 116 1 N LEU A 113 O ILE A 142 SHEET 3 A 9 GLY A 77 ALA A 83 1 N PHE A 82 O ASN A 116 SHEET 4 A 9 THR A 2 VAL A 9 1 N VAL A 9 O VAL A 81 SHEET 5 A 9 GLU A 49 THR A 58 1 O LEU A 56 N LEU A 6 SHEET 6 A 9 GLU A 37 ILE A 46 -1 N LYS A 42 O LEU A 53 SHEET 7 A 9 PHE B 275 SER B 288 -1 O ILE B 282 N SER A 39 SHEET 8 A 9 TYR B 231 VAL B 245 -1 N LEU B 239 O ALA B 281 SHEET 9 A 9 LYS B 224 LEU B 225 -1 N LYS B 224 O THR B 232 SHEET 1 B11 TYR A 141 GLU A 143 0 SHEET 2 B11 MET A 111 ASN A 116 1 N LEU A 113 O ILE A 142 SHEET 3 B11 GLY A 77 ALA A 83 1 N PHE A 82 O ASN A 116 SHEET 4 B11 THR A 2 VAL A 9 1 N VAL A 9 O VAL A 81 SHEET 5 B11 GLU A 49 THR A 58 1 O LEU A 56 N LEU A 6 SHEET 6 B11 GLU A 37 ILE A 46 -1 N LYS A 42 O LEU A 53 SHEET 7 B11 PHE B 275 SER B 288 -1 O ILE B 282 N SER A 39 SHEET 8 B11 TYR B 231 VAL B 245 -1 N LEU B 239 O ALA B 281 SHEET 9 B11 SER B 351 GLU B 356 1 O LEU B 354 N HIS B 238 SHEET 10 B11 PHE B 313 LYS B 321 -1 N ARG B 318 O SER B 351 SHEET 11 B11 GLN B 324 LYS B 329 -1 O GLN B 324 N LYS B 321 LINK OG SER A 17 MG MG A 600 1555 1555 2.11 LINK OG1 THR A 35 MG MG A 600 1555 1555 2.08 LINK MG MG A 600 O2G GNP A 500 1555 1555 2.02 LINK MG MG A 600 O2B GNP A 500 1555 1555 2.05 LINK MG MG A 600 O HOH A 603 1555 1555 2.03 LINK MG MG A 600 O HOH A 602 1555 1555 2.12 CISPEP 1 PRO B 200 PRO B 201 0 -23.68 SITE 1 AC1 2 SER A 17 THR A 35 SITE 1 AC2 20 GLY A 12 GLY A 13 GLY A 15 LYS A 16 SITE 2 AC2 20 SER A 17 ALA A 18 PHE A 28 GLU A 30 SITE 3 AC2 20 LYS A 31 TYR A 32 PRO A 34 THR A 35 SITE 4 AC2 20 GLY A 60 ASN A 116 LYS A 117 ASP A 119 SITE 5 AC2 20 LEU A 120 SER A 145 ALA A 146 LYS A 147 CRYST1 79.600 88.000 56.500 90.00 125.00 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012563 0.000000 0.008797 0.00000 SCALE2 0.000000 0.011364 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021607 0.00000