PDB Short entry for 3DEF HEADER HYDROLASE 10-JUN-08 3DEF TITLE CRYSTAL STRUCTURE OF TOC33 FROM ARABIDOPSIS THALIANA, DIMERIZATION TITLE 2 DEFICIENT MUTANT R130A COMPND MOL_ID: 1; COMPND 2 MOLECULE: T7I23.11 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: GTP-DOMAIN, UNP RESIDUES 1-251; COMPND 5 SYNONYM: AT1G02280, AT1G02280/T7I23.11, ATTOC33 PROTEIN; COMPND 6 EC: 3.6.5.2; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS,THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: T7I23.11; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21D KEYWDS CHLOROPLAST, TOC33, GTPASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.KOENIG,E.SCHLEIFF,I.SINNING,I.TEWS REVDAT 6 01-NOV-23 3DEF 1 REMARK REVDAT 5 10-NOV-21 3DEF 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 3DEF 1 VERSN REVDAT 3 24-FEB-09 3DEF 1 VERSN REVDAT 2 16-SEP-08 3DEF 1 JRNL REVDAT 1 24-JUN-08 3DEF 0 JRNL AUTH P.KOENIG,M.OREB,K.RIPPE,C.MUHLE-GOLL,I.SINNING,E.SCHLEIFF, JRNL AUTH 2 I.TEWS JRNL TITL ON THE SIGNIFICANCE OF TOC-GTPASE HOMODIMERS JRNL REF J.BIOL.CHEM. V. 283 23104 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18541539 JRNL DOI 10.1074/JBC.M710576200 REMARK 2 REMARK 2 RESOLUTION. 1.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0008 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 20125 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1082 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.96 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.99 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1384 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.49 REMARK 3 BIN R VALUE (WORKING SET) : 0.1780 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.2290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1901 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 206 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 25.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.09000 REMARK 3 B22 (A**2) : -0.09000 REMARK 3 B33 (A**2) : 0.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.152 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.142 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.090 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.932 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2054 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1392 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2797 ; 1.757 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3422 ; 1.024 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 264 ; 5.992 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 88 ;38.517 ;24.773 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 374 ;16.098 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;19.120 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 320 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2290 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 403 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 444 ; 0.222 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1448 ; 0.201 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1045 ; 0.180 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1118 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 166 ; 0.175 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 3 ; 0.404 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 23 ; 0.325 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.138 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1387 ; 1.452 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 515 ; 0.299 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2063 ; 1.922 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 872 ; 3.047 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 731 ; 4.519 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 282 REMARK 3 ORIGIN FOR THE GROUP (A): -21.9992 16.4390 0.3944 REMARK 3 T TENSOR REMARK 3 T11: -0.0054 T22: -0.0333 REMARK 3 T33: -0.0193 T12: -0.0029 REMARK 3 T13: -0.0176 T23: 0.0139 REMARK 3 L TENSOR REMARK 3 L11: 0.0983 L22: 0.7903 REMARK 3 L33: 0.7622 L12: -0.1010 REMARK 3 L13: -0.0496 L23: -0.3098 REMARK 3 S TENSOR REMARK 3 S11: -0.0009 S12: -0.0258 S13: -0.0248 REMARK 3 S21: 0.0467 S22: 0.0105 S23: -0.0225 REMARK 3 S31: -0.0952 S32: -0.0262 S33: -0.0097 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3DEF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000047935. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : DIAMOND (111), GE(220) REMARK 200 OPTICS : TOROIDAL ZERODUR MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21395 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.960 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 37.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.28400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3BB3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2M NH4CL, 20% REMARK 280 GLYCEROL, PH 7.4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.23000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 35.72000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 35.72000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 84.34500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 35.72000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 35.72000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.11500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 35.72000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.72000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 84.34500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 35.72000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.72000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 28.11500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 56.23000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHOR STATES THAT THE BIOLOGICAL UNIT IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 LEU A 4 REMARK 465 VAL A 5 REMARK 465 GLU A 70 REMARK 465 ASP A 251 REMARK 465 ALA A 252 REMARK 465 ALA A 253 REMARK 465 ALA A 254 REMARK 465 LEU A 255 REMARK 465 GLU A 256 REMARK 465 HIS A 257 REMARK 465 HIS A 258 REMARK 465 HIS A 259 REMARK 465 HIS A 260 REMARK 465 HIS A 261 REMARK 465 HIS A 262 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 244 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 232 O HOH A 324 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 72 CA - CB - CG ANGL. DEV. = 22.0 DEGREES REMARK 500 MET A 81 CG - SD - CE ANGL. DEV. = 12.6 DEGREES REMARK 500 ARG A 178 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 114 -23.73 82.98 REMARK 500 ASP A 167 -127.99 54.13 REMARK 500 ALA A 247 172.03 -59.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 282 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 50 OG REMARK 620 2 GDP A 281 O3B 101.0 REMARK 620 3 HOH A 291 O 87.0 90.0 REMARK 620 4 HOH A 296 O 88.4 96.6 172.6 REMARK 620 5 HOH A 302 O 83.2 172.9 84.5 89.2 REMARK 620 6 HOH A 306 O 171.7 86.3 88.9 94.9 89.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 282 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 281 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2J3E RELATED DB: PDB REMARK 900 TOC33 R130A AT 3.2 ANGSTROM RESOLUTION MODELLED WITH DIFFERENT REMARK 900 NUCLEOTIDE CONFORMATION DBREF 3DEF A 1 251 UNP O23680 O23680_ARATH 1 251 SEQADV 3DEF ALA A 130 UNP O23680 ARG 130 ENGINEERED MUTATION SEQADV 3DEF ALA A 252 UNP O23680 EXPRESSION TAG SEQADV 3DEF ALA A 253 UNP O23680 EXPRESSION TAG SEQADV 3DEF ALA A 254 UNP O23680 EXPRESSION TAG SEQADV 3DEF LEU A 255 UNP O23680 EXPRESSION TAG SEQADV 3DEF GLU A 256 UNP O23680 EXPRESSION TAG SEQADV 3DEF HIS A 257 UNP O23680 EXPRESSION TAG SEQADV 3DEF HIS A 258 UNP O23680 EXPRESSION TAG SEQADV 3DEF HIS A 259 UNP O23680 EXPRESSION TAG SEQADV 3DEF HIS A 260 UNP O23680 EXPRESSION TAG SEQADV 3DEF HIS A 261 UNP O23680 EXPRESSION TAG SEQADV 3DEF HIS A 262 UNP O23680 EXPRESSION TAG SEQRES 1 A 262 MET GLY SER LEU VAL ARG GLU TRP VAL GLY PHE GLN GLN SEQRES 2 A 262 PHE PRO ALA ALA THR GLN GLU LYS LEU ILE GLU PHE PHE SEQRES 3 A 262 GLY LYS LEU LYS GLN LYS ASP MET ASN SER MET THR VAL SEQRES 4 A 262 LEU VAL LEU GLY LYS GLY GLY VAL GLY LYS SER SER THR SEQRES 5 A 262 VAL ASN SER LEU ILE GLY GLU GLN VAL VAL ARG VAL SER SEQRES 6 A 262 PRO PHE GLN ALA GLU GLY LEU ARG PRO VAL MET VAL SER SEQRES 7 A 262 ARG THR MET GLY GLY PHE THR ILE ASN ILE ILE ASP THR SEQRES 8 A 262 PRO GLY LEU VAL GLU ALA GLY TYR VAL ASN HIS GLN ALA SEQRES 9 A 262 LEU GLU LEU ILE LYS GLY PHE LEU VAL ASN ARG THR ILE SEQRES 10 A 262 ASP VAL LEU LEU TYR VAL ASP ARG LEU ASP VAL TYR ALA SEQRES 11 A 262 VAL ASP GLU LEU ASP LYS GLN VAL VAL ILE ALA ILE THR SEQRES 12 A 262 GLN THR PHE GLY LYS GLU ILE TRP CYS LYS THR LEU LEU SEQRES 13 A 262 VAL LEU THR HIS ALA GLN PHE SER PRO PRO ASP GLU LEU SEQRES 14 A 262 SER TYR GLU THR PHE SER SER LYS ARG SER ASP SER LEU SEQRES 15 A 262 LEU LYS THR ILE ARG ALA GLY SER LYS MET ARG LYS GLN SEQRES 16 A 262 GLU PHE GLU ASP SER ALA ILE ALA VAL VAL TYR ALA GLU SEQRES 17 A 262 ASN SER GLY ARG CYS SER LYS ASN ASP LYS ASP GLU LYS SEQRES 18 A 262 ALA LEU PRO ASN GLY GLU ALA TRP ILE PRO ASN LEU VAL SEQRES 19 A 262 LYS ALA ILE THR ASP VAL ALA THR ASN GLN ARG LYS ALA SEQRES 20 A 262 ILE HIS VAL ASP ALA ALA ALA LEU GLU HIS HIS HIS HIS SEQRES 21 A 262 HIS HIS HET MG A 282 1 HET GDP A 281 28 HETNAM MG MAGNESIUM ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE FORMUL 2 MG MG 2+ FORMUL 3 GDP C10 H15 N5 O11 P2 FORMUL 4 HOH *206(H2 O) HELIX 1 1 TRP A 8 GLN A 13 1 6 HELIX 2 2 PRO A 15 LYS A 32 1 18 HELIX 3 3 GLY A 48 GLY A 58 1 11 HELIX 4 4 ASN A 101 LEU A 112 1 12 HELIX 5 5 ASP A 132 GLY A 147 1 16 HELIX 6 6 LYS A 148 CYS A 152 5 5 HELIX 7 7 SER A 170 LYS A 191 1 22 HELIX 8 8 ARG A 193 ALA A 201 1 9 HELIX 9 9 ALA A 228 THR A 242 1 15 SHEET 1 A 6 VAL A 75 MET A 81 0 SHEET 2 A 6 PHE A 84 ASP A 90 -1 O ILE A 88 N VAL A 77 SHEET 3 A 6 SER A 36 GLY A 43 1 N VAL A 39 O ILE A 89 SHEET 4 A 6 VAL A 119 ARG A 125 1 O LEU A 121 N LEU A 40 SHEET 5 A 6 THR A 154 THR A 159 1 O LEU A 155 N TYR A 122 SHEET 6 A 6 ALA A 203 TYR A 206 1 O VAL A 205 N LEU A 156 SHEET 1 B 2 VAL A 95 GLU A 96 0 SHEET 2 B 2 TYR A 99 VAL A 100 -1 O TYR A 99 N GLU A 96 SHEET 1 C 2 THR A 116 ILE A 117 0 SHEET 2 C 2 ILE A 248 HIS A 249 -1 O ILE A 248 N ILE A 117 LINK OG SER A 50 MG MG A 282 1555 1555 2.08 LINK O3B GDP A 281 MG MG A 282 1555 1555 2.05 LINK MG MG A 282 O HOH A 291 1555 1555 2.10 LINK MG MG A 282 O HOH A 296 1555 1555 1.99 LINK MG MG A 282 O HOH A 302 1555 1555 2.28 LINK MG MG A 282 O HOH A 306 1555 1555 2.19 SITE 1 AC1 5 SER A 50 HOH A 291 HOH A 296 HOH A 302 SITE 2 AC1 5 HOH A 306 SITE 1 AC2 20 GLY A 46 GLY A 48 LYS A 49 SER A 50 SITE 2 AC2 20 SER A 51 SER A 65 GLN A 68 THR A 159 SITE 3 AC2 20 HIS A 160 GLU A 208 ASN A 209 HOH A 291 SITE 4 AC2 20 HOH A 296 HOH A 306 HOH A 312 HOH A 321 SITE 5 AC2 20 HOH A 361 HOH A 363 HOH A 367 HOH A 377 CRYST1 71.440 71.440 112.460 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013998 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013998 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008892 0.00000