PDB Short entry for 3DEW HEADER TRANSCRIPTION REGULATOR 10-JUN-08 3DEW TITLE THE STRUCTURE OF A PUTATIVE TETR FAMILY TRANSCRIPTIONAL REGULATOR FROM TITLE 2 GEOBACTER SULFURREDUCENS PCA. COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, TETR FAMILY; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACTER SULFURREDUCENS; SOURCE 3 ORGANISM_TAXID: 35554; SOURCE 4 STRAIN: PCA; SOURCE 5 GENE: GSU0175; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS TETR, TRANSCRIPTIONAL REGULATOR, GEOBACTER SULFURREDUCENS, STRUCTURAL KEYWDS 2 GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, MCSG, DNA-BINDING, TRANSCRIPTION, TRANSCRIPTION KEYWDS 4 REGULATION, TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR M.E.CUFF,L.BIGELOW,J.ABDULLAH,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 4 25-OCT-17 3DEW 1 REMARK REVDAT 3 13-JUL-11 3DEW 1 VERSN REVDAT 2 24-FEB-09 3DEW 1 VERSN REVDAT 1 30-SEP-08 3DEW 0 JRNL AUTH M.E.CUFF,L.BIGELOW,J.ABDULLAH,A.JOACHIMIAK JRNL TITL THE STRUCTURE OF A PUTATIVE TETR FAMILY TRANSCRIPTIONAL JRNL TITL 2 REGULATOR FROM GEOBACTER SULFURREDUCENS PCA. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 18099 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 926 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1249 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.1900 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.2690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1477 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 162 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 24.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.43000 REMARK 3 B22 (A**2) : 0.43000 REMARK 3 B33 (A**2) : -0.65000 REMARK 3 B12 (A**2) : 0.22000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.133 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.123 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.080 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.961 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1725 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2351 ; 1.430 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 233 ; 4.846 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 78 ;32.301 ;22.692 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 289 ;13.456 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;25.063 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 255 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1368 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 862 ; 0.225 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1265 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 146 ; 0.141 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 103 ; 0.232 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.143 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1115 ; 1.277 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1753 ; 1.538 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 686 ; 2.920 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 598 ; 4.285 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 49 REMARK 3 ORIGIN FOR THE GROUP (A): -23.9856 39.3277 -1.4577 REMARK 3 T TENSOR REMARK 3 T11: 0.1370 T22: 0.1654 REMARK 3 T33: 0.1472 T12: -0.1097 REMARK 3 T13: -0.0817 T23: 0.0754 REMARK 3 L TENSOR REMARK 3 L11: 5.2950 L22: 1.9158 REMARK 3 L33: 6.2632 L12: 2.5276 REMARK 3 L13: 0.6813 L23: -0.7717 REMARK 3 S TENSOR REMARK 3 S11: 0.5272 S12: -0.7146 S13: -0.4389 REMARK 3 S21: 0.3110 S22: -0.3610 S23: -0.4724 REMARK 3 S31: -0.0642 S32: 0.4294 S33: -0.1662 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 50 A 72 REMARK 3 ORIGIN FOR THE GROUP (A): -32.0346 22.0731 -7.0941 REMARK 3 T TENSOR REMARK 3 T11: 0.0011 T22: 0.0965 REMARK 3 T33: 0.1581 T12: -0.0005 REMARK 3 T13: -0.0174 T23: 0.0588 REMARK 3 L TENSOR REMARK 3 L11: 1.7087 L22: 14.3322 REMARK 3 L33: 0.8847 L12: 4.9389 REMARK 3 L13: 0.0196 L23: 0.2801 REMARK 3 S TENSOR REMARK 3 S11: -0.0157 S12: 0.1035 S13: -0.2748 REMARK 3 S21: 0.0712 S22: -0.1788 S23: -1.0581 REMARK 3 S31: 0.1950 S32: 0.2731 S33: 0.1945 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 73 A 96 REMARK 3 ORIGIN FOR THE GROUP (A): -40.5797 11.1011 -0.7972 REMARK 3 T TENSOR REMARK 3 T11: 0.1523 T22: 0.0545 REMARK 3 T33: 0.0382 T12: 0.0407 REMARK 3 T13: 0.0489 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 2.2132 L22: 5.1297 REMARK 3 L33: 5.8027 L12: 1.6900 REMARK 3 L13: 2.7058 L23: 3.8077 REMARK 3 S TENSOR REMARK 3 S11: -0.1761 S12: -0.0148 S13: 0.0025 REMARK 3 S21: 0.0649 S22: 0.0154 S23: -0.1497 REMARK 3 S31: 0.3296 S32: 0.2234 S33: 0.1607 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 97 A 142 REMARK 3 ORIGIN FOR THE GROUP (A): -44.2891 19.5183 -9.1245 REMARK 3 T TENSOR REMARK 3 T11: 0.0543 T22: 0.0884 REMARK 3 T33: 0.0381 T12: -0.0095 REMARK 3 T13: 0.0241 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 0.9454 L22: 5.0594 REMARK 3 L33: 0.9899 L12: 1.1984 REMARK 3 L13: 0.1553 L23: 0.6372 REMARK 3 S TENSOR REMARK 3 S11: -0.0114 S12: 0.0781 S13: -0.0676 REMARK 3 S21: 0.1522 S22: -0.1435 S23: -0.0691 REMARK 3 S31: 0.1564 S32: 0.0463 S33: 0.1548 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 143 A 168 REMARK 3 ORIGIN FOR THE GROUP (A): -51.1259 17.4668 -1.6285 REMARK 3 T TENSOR REMARK 3 T11: 0.1156 T22: 0.0829 REMARK 3 T33: 0.1035 T12: -0.0328 REMARK 3 T13: 0.0529 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 1.2227 L22: 4.7022 REMARK 3 L33: 8.8830 L12: 0.6232 REMARK 3 L13: 0.9661 L23: 5.1046 REMARK 3 S TENSOR REMARK 3 S11: -0.0596 S12: 0.0866 S13: -0.1175 REMARK 3 S21: 0.1630 S22: -0.1590 S23: 0.1772 REMARK 3 S31: 0.3319 S32: -0.3284 S33: 0.2186 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 169 A 196 REMARK 3 ORIGIN FOR THE GROUP (A): -49.5419 11.0850 8.7810 REMARK 3 T TENSOR REMARK 3 T11: 0.2498 T22: 0.0284 REMARK 3 T33: 0.0925 T12: 0.0323 REMARK 3 T13: 0.0884 T23: 0.0436 REMARK 3 L TENSOR REMARK 3 L11: 2.7122 L22: 0.9877 REMARK 3 L33: 4.5024 L12: -0.2533 REMARK 3 L13: -0.5877 L23: 1.7393 REMARK 3 S TENSOR REMARK 3 S11: -0.2384 S12: -0.0947 S13: -0.3294 REMARK 3 S21: 0.3405 S22: 0.0637 S23: -0.0069 REMARK 3 S31: 0.6114 S32: 0.2128 S33: 0.1747 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3DEW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000047952. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915,0.97937 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18099 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 44.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 10.80 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : 0.07400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.80 REMARK 200 R MERGE FOR SHELL (I) : 0.48300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MLPHARE, DM 5.0, HKL-3000, SHELXD, SOLVE, RESOLVE, REMARK 200 CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NA ACETATE PH4.6, 4% PEG 4K, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.03333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 25.51667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 25.51667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 51.03333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL ASSEMBLY IS LIKELY DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 -94.65900 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 54.65140 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 276 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 ARG A 3 REMARK 465 ALA A 4 REMARK 465 ASP A 197 REMARK 465 GLY A 198 REMARK 465 GLY A 199 REMARK 465 ALA A 200 REMARK 465 ALA A 201 REMARK 465 PRO A 202 REMARK 465 ALA A 203 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 7 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 33 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 112 S2 BME A 205 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 108 61.13 -153.77 REMARK 500 ILE A 116 -52.25 -124.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 209 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC88507 RELATED DB: TARGETDB DBREF 3DEW A 2 203 UNP Q74GS0 Q74GS0_GEOSL 2 203 SEQADV 3DEW SER A -2 UNP Q74GS0 EXPRESSION TAG SEQADV 3DEW ASN A -1 UNP Q74GS0 EXPRESSION TAG SEQADV 3DEW ALA A 0 UNP Q74GS0 EXPRESSION TAG SEQADV 3DEW MSE A 1 UNP Q74GS0 EXPRESSION TAG SEQRES 1 A 206 SER ASN ALA MSE THR ARG ALA ASP CYS ARG SER ARG LEU SEQRES 2 A 206 MSE GLU VAL ALA THR GLU LEU PHE ALA GLN LYS GLY PHE SEQRES 3 A 206 TYR GLY VAL SER ILE ARG GLU LEU ALA GLN ALA ALA GLY SEQRES 4 A 206 ALA SER ILE SER MSE ILE SER TYR HIS PHE GLY GLY LYS SEQRES 5 A 206 GLU GLY LEU TYR ALA ALA VAL LEU GLN GLU GLN PHE ALA SEQRES 6 A 206 CYS PHE GLY GLN LEU ASP ASP ILE ARG GLY GLN ALA GLY SEQRES 7 A 206 ASP PRO LEU ALA VAL MSE THR ALA TYR LEU ARG TRP THR SEQRES 8 A 206 ILE GLN ARG HIS ARG ASN ASN PRO GLN LEU LEU ARG PHE SEQRES 9 A 206 TYR THR SER GLU LEU THR ASN PRO THR PRO CYS PHE ALA SEQRES 10 A 206 ALA ILE VAL SER PRO ALA ILE ALA SER VAL ILE ARG LEU SEQRES 11 A 206 LEU ALA GLU SER ILE GLU ALA GLY MSE THR ARG GLY LEU SEQRES 12 A 206 PHE ARG ARG ASP LEU HIS ALA VAL ASN SER ALA LEU ALA SEQRES 13 A 206 LEU ALA GLY MSE VAL ASN TYR PHE PHE LEU SER THR LEU SEQRES 14 A 206 ALA THR GLU GLY LEU THR SER HIS SER PRO ASP GLN ASP SEQRES 15 A 206 GLU GLU LEU ILE ARG GLN TYR VAL ALA ILE PHE THR ARG SEQRES 16 A 206 GLY ILE MSE ALA ASP GLY GLY ALA ALA PRO ALA MODRES 3DEW MSE A 11 MET SELENOMETHIONINE MODRES 3DEW MSE A 41 MET SELENOMETHIONINE MODRES 3DEW MSE A 81 MET SELENOMETHIONINE MODRES 3DEW MSE A 136 MET SELENOMETHIONINE MODRES 3DEW MSE A 157 MET SELENOMETHIONINE MODRES 3DEW MSE A 195 MET SELENOMETHIONINE HET MSE A 11 16 HET MSE A 41 16 HET MSE A 81 16 HET MSE A 136 8 HET MSE A 157 16 HET MSE A 195 16 HET CL A 204 1 HET BME A 205 4 HET EDO A 206 4 HET EDO A 207 4 HET EDO A 208 4 HET ACY A 209 4 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM BME BETA-MERCAPTOETHANOL HETNAM EDO 1,2-ETHANEDIOL HETNAM ACY ACETIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 CL CL 1- FORMUL 3 BME C2 H6 O S FORMUL 4 EDO 3(C2 H6 O2) FORMUL 7 ACY C2 H4 O2 FORMUL 8 HOH *162(H2 O) HELIX 1 1 ASP A 5 GLY A 22 1 18 HELIX 2 2 PHE A 23 VAL A 26 5 4 HELIX 3 3 SER A 27 GLY A 36 1 10 HELIX 4 4 SER A 38 PHE A 46 1 9 HELIX 5 5 GLY A 47 ALA A 62 1 16 HELIX 6 6 CYS A 63 GLN A 66 5 4 HELIX 7 7 LEU A 67 GLY A 72 1 6 HELIX 8 8 ASP A 76 ASN A 95 1 20 HELIX 9 9 GLN A 97 ASN A 108 1 12 HELIX 10 10 PRO A 111 ILE A 116 1 6 HELIX 11 11 ILE A 116 ARG A 138 1 23 HELIX 12 12 HIS A 146 SER A 164 1 19 HELIX 13 13 THR A 165 THR A 168 5 4 HELIX 14 14 SER A 175 ASP A 177 5 3 HELIX 15 15 GLN A 178 GLY A 193 1 16 LINK C LEU A 10 N AMSE A 11 1555 1555 1.33 LINK C LEU A 10 N BMSE A 11 1555 1555 1.34 LINK C AMSE A 11 N GLU A 12 1555 1555 1.34 LINK C BMSE A 11 N GLU A 12 1555 1555 1.34 LINK C ASER A 40 N AMSE A 41 1555 1555 1.34 LINK C BSER A 40 N BMSE A 41 1555 1555 1.33 LINK C AMSE A 41 N ILE A 42 1555 1555 1.33 LINK C BMSE A 41 N ILE A 42 1555 1555 1.33 LINK C VAL A 80 N AMSE A 81 1555 1555 1.33 LINK C VAL A 80 N BMSE A 81 1555 1555 1.33 LINK C AMSE A 81 N THR A 82 1555 1555 1.33 LINK C BMSE A 81 N THR A 82 1555 1555 1.33 LINK C GLY A 135 N MSE A 136 1555 1555 1.33 LINK C MSE A 136 N THR A 137 1555 1555 1.34 LINK C GLY A 156 N AMSE A 157 1555 1555 1.33 LINK C GLY A 156 N BMSE A 157 1555 1555 1.33 LINK C AMSE A 157 N VAL A 158 1555 1555 1.33 LINK C BMSE A 157 N VAL A 158 1555 1555 1.33 LINK C ILE A 194 N AMSE A 195 1555 1555 1.34 LINK C ILE A 194 N BMSE A 195 1555 1555 1.33 LINK C AMSE A 195 N ALA A 196 1555 1555 1.33 LINK C BMSE A 195 N ALA A 196 1555 1555 1.34 SITE 1 AC1 2 GLY A 75 SER A 131 SITE 1 AC2 3 HIS A 45 CYS A 112 HOH A 353 SITE 1 AC3 7 ASN A 149 PHE A 161 THR A 172 SER A 173 SITE 2 AC3 7 GLN A 178 LEU A 182 HOH A 338 SITE 1 AC4 3 GLY A 139 ARG A 143 ALA A 196 SITE 1 AC5 4 GLU A 180 ARG A 184 HOH A 218 HOH A 370 SITE 1 AC6 6 TYR A 84 ARG A 91 TYR A 102 ASN A 159 SITE 2 AC6 6 TYR A 160 HOH A 232 CRYST1 63.106 63.106 76.550 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015846 0.009149 0.000000 0.00000 SCALE2 0.000000 0.018298 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013063 0.00000