PDB Short entry for 3DF8 HEADER TRANSCRIPTION 11-JUN-08 3DF8 TITLE THE CRYSTAL STRUCTURE OF A POSSIBLE HXLR FAMILY TRANSCRIPTIONAL FACTOR TITLE 2 FROM THERMOPLASMA VOLCANIUM GSS1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POSSIBLE HXLR FAMILY TRANSCRIPTIONAL FACTOR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOPLASMA VOLCANIUM; SOURCE 3 ORGANISM_TAXID: 50339; SOURCE 4 STRAIN: GSS1; SOURCE 5 GENE: TV1295, TVG1336486; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS APC89000, HXLR, TRANSCRIPTIONAL FACTOR, STRUCTURAL GENOMICS, PSI-2, KEYWDS 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,C.TESAR,S.MOY,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 3 13-JUL-11 3DF8 1 VERSN REVDAT 2 24-FEB-09 3DF8 1 VERSN REVDAT 1 05-AUG-08 3DF8 0 JRNL AUTH K.TAN,C.TESAR,S.MOY,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF A POSSIBLE HXLR FAMILY JRNL TITL 2 TRANSCRIPTIONAL FACTOR FROM THERMOPLASMA VOLCANIUM GSS1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 13052 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 681 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.66 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.70 REMARK 3 REFLECTION IN BIN (WORKING SET) : 772 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE SET COUNT : 42 REMARK 3 BIN FREE R VALUE : 0.3260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 848 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 84 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.17000 REMARK 3 B22 (A**2) : 0.16000 REMARK 3 B33 (A**2) : -0.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.22000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.096 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.099 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.068 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.097 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 930 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1272 ; 1.558 ; 1.999 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 132 ; 5.501 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 39 ;30.691 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 182 ;13.834 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;16.082 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 153 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 695 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 430 ; 0.219 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 652 ; 0.311 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 62 ; 0.139 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 73 ; 0.203 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.121 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 609 ; 0.899 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 961 ; 1.364 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 358 ; 2.284 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 300 ; 3.580 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -2 A 15 REMARK 3 ORIGIN FOR THE GROUP (A): -5.7100 31.2610 13.4870 REMARK 3 T TENSOR REMARK 3 T11: -0.0725 T22: 0.0303 REMARK 3 T33: -0.0350 T12: 0.0280 REMARK 3 T13: 0.0180 T23: -0.0772 REMARK 3 L TENSOR REMARK 3 L11: 5.7414 L22: 13.8057 REMARK 3 L33: 3.4148 L12: 4.0066 REMARK 3 L13: -0.6978 L23: -0.2150 REMARK 3 S TENSOR REMARK 3 S11: -0.1352 S12: -0.5517 S13: -0.0415 REMARK 3 S21: -0.1088 S22: -0.2244 S23: 0.6863 REMARK 3 S31: 0.1841 S32: -0.7738 S33: 0.3596 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 16 A 24 REMARK 3 ORIGIN FOR THE GROUP (A): -5.4890 21.7750 0.1490 REMARK 3 T TENSOR REMARK 3 T11: -0.0971 T22: -0.1479 REMARK 3 T33: -0.0746 T12: -0.0022 REMARK 3 T13: -0.0182 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 10.7530 L22: 14.6649 REMARK 3 L33: 43.3278 L12: -10.0755 REMARK 3 L13: -21.3842 L23: 17.9902 REMARK 3 S TENSOR REMARK 3 S11: -0.0992 S12: -0.4542 S13: -0.1824 REMARK 3 S21: 0.3021 S22: 0.2777 S23: -0.0835 REMARK 3 S31: 1.1139 S32: 0.4128 S33: -0.1784 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 25 A 35 REMARK 3 ORIGIN FOR THE GROUP (A): -3.4000 26.9290 -10.7630 REMARK 3 T TENSOR REMARK 3 T11: -0.1880 T22: -0.1812 REMARK 3 T33: -0.1200 T12: 0.0014 REMARK 3 T13: 0.0392 T23: -0.0183 REMARK 3 L TENSOR REMARK 3 L11: 6.3656 L22: 7.0633 REMARK 3 L33: 11.9411 L12: -0.7623 REMARK 3 L13: 4.2726 L23: -3.9258 REMARK 3 S TENSOR REMARK 3 S11: -0.1236 S12: 0.2838 S13: 0.0059 REMARK 3 S21: 0.0211 S22: -0.0909 S23: -0.1511 REMARK 3 S31: -0.0995 S32: 0.3050 S33: 0.2145 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 36 A 83 REMARK 3 ORIGIN FOR THE GROUP (A): -10.5870 23.2120 -15.2180 REMARK 3 T TENSOR REMARK 3 T11: -0.1374 T22: -0.1706 REMARK 3 T33: -0.1198 T12: 0.0065 REMARK 3 T13: 0.0340 T23: -0.0199 REMARK 3 L TENSOR REMARK 3 L11: 4.3192 L22: 1.5111 REMARK 3 L33: 2.9130 L12: -0.3605 REMARK 3 L13: 1.9496 L23: 0.7414 REMARK 3 S TENSOR REMARK 3 S11: 0.0567 S12: 0.3783 S13: -0.0905 REMARK 3 S21: -0.0644 S22: -0.0319 S23: -0.0887 REMARK 3 S31: 0.1705 S32: 0.1098 S33: -0.0248 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 84 A 106 REMARK 3 ORIGIN FOR THE GROUP (A): 2.1060 33.6910 -5.2010 REMARK 3 T TENSOR REMARK 3 T11: -0.0918 T22: -0.1705 REMARK 3 T33: -0.0852 T12: -0.0214 REMARK 3 T13: 0.0044 T23: 0.0445 REMARK 3 L TENSOR REMARK 3 L11: 11.9315 L22: 1.4824 REMARK 3 L33: 2.4062 L12: -0.0319 REMARK 3 L13: 2.0035 L23: -0.0643 REMARK 3 S TENSOR REMARK 3 S11: -0.0689 S12: 0.3761 S13: 0.4447 REMARK 3 S21: -0.0389 S22: -0.1701 S23: -0.0754 REMARK 3 S31: -0.2254 S32: 0.3240 S33: 0.2390 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3DF8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JUN-08. REMARK 100 THE RCSB ID CODE IS RCSB047964. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13735 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 38.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 27.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.47700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD/MLPHARE/DM/RESOLVE/HKL3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M CACIUM ACETATE, 0.1M MES 20%(W/ REMARK 280 V) PEG8000, PH 6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 32.86950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.37750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 32.86950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.37750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL UNIT IS EXPERIMENTALLY REMARK 300 UNKNOWN. THE MOLECULE IS EXPECTED TO FORM A DIMER WITH ITS SYMMETRY REMARK 300 -RELATED MOLECULE (-X,1+Y,-Z). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 126 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 107 REMARK 465 ASP A 108 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 25 -15.88 83.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 109 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 110 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC89000 RELATED DB: TARGETDB DBREF 3DF8 A 1 108 UNP Q978X0 Q978X0_THEVO 10 117 SEQADV 3DF8 SER A -2 UNP Q978X0 EXPRESSION TAG SEQADV 3DF8 ASN A -1 UNP Q978X0 EXPRESSION TAG SEQADV 3DF8 ALA A 0 UNP Q978X0 EXPRESSION TAG SEQRES 1 A 111 SER ASN ALA MSE LEU ARG TYR GLY ASP THR GLU ILE CYS SEQRES 2 A 111 ILE ASP PRO SER GLU SER VAL LEU HIS LEU LEU GLY LYS SEQRES 3 A 111 LYS TYR THR MSE LEU ILE ILE SER VAL LEU GLY ASN GLY SEQRES 4 A 111 SER THR ARG GLN ASN PHE ASN ASP ILE ARG SER SER ILE SEQRES 5 A 111 PRO GLY ILE SER SER THR ILE LEU SER ARG ARG ILE LYS SEQRES 6 A 111 ASP LEU ILE ASP SER GLY LEU VAL GLU ARG ARG SER GLY SEQRES 7 A 111 GLN ILE THR THR TYR ALA LEU THR GLU LYS GLY MSE ASN SEQRES 8 A 111 VAL ARG ASN SER LEU MSE PRO LEU LEU GLN TYR ILE SER SEQRES 9 A 111 VAL LEU ASP ARG ASN GLY ASP MODRES 3DF8 MSE A 1 MET SELENOMETHIONINE MODRES 3DF8 MSE A 27 MET SELENOMETHIONINE MODRES 3DF8 MSE A 87 MET SELENOMETHIONINE MODRES 3DF8 MSE A 94 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 27 8 HET MSE A 87 8 HET MSE A 94 8 HET ACT A 109 4 HET ACT A 110 4 HETNAM MSE SELENOMETHIONINE HETNAM ACT ACETATE ION FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 ACT 2(C2 H3 O2 1-) FORMUL 4 HOH *84(H2 O) HELIX 1 1 VAL A 17 LYS A 23 1 7 HELIX 2 2 TYR A 25 GLY A 34 1 10 HELIX 3 3 ASN A 41 SER A 48 1 8 HELIX 4 4 SER A 53 SER A 67 1 15 HELIX 5 5 THR A 83 ASN A 106 1 24 SHEET 1 A 2 ALA A 0 TYR A 4 0 SHEET 2 A 2 THR A 7 ILE A 11 -1 O ILE A 11 N ALA A 0 SHEET 1 B 2 VAL A 70 SER A 74 0 SHEET 2 B 2 THR A 78 LEU A 82 -1 O THR A 79 N ARG A 73 LINK C ALA A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N LEU A 2 1555 1555 1.33 LINK C THR A 26 N MSE A 27 1555 1555 1.33 LINK C MSE A 27 N LEU A 28 1555 1555 1.32 LINK C GLY A 86 N MSE A 87 1555 1555 1.33 LINK C MSE A 87 N ASN A 88 1555 1555 1.33 LINK C LEU A 93 N MSE A 94 1555 1555 1.34 LINK C MSE A 94 N PRO A 95 1555 1555 1.35 SITE 1 AC1 8 ARG A 3 TYR A 4 GLY A 5 ARG A 46 SITE 2 AC1 8 SER A 54 ARG A 90 HOH A 123 HOH A 135 SITE 1 AC2 5 PRO A 13 HIS A 19 LYS A 24 TYR A 25 SITE 2 AC2 5 HOH A 111 CRYST1 65.739 54.755 40.687 90.00 125.31 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015212 0.000000 0.010774 0.00000 SCALE2 0.000000 0.018263 0.000000 0.00000 SCALE3 0.000000 0.000000 0.030118 0.00000