PDB Short entry for 3DFV HEADER TRANSCRIPTION/DNA 12-JUN-08 3DFV TITLE ADJACENT GATA DNA BINDING COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*DTP*DTP*DCP*DTP*DGP*DAP*DTP*DAP*DAP*DGP*DAP*DCP*DTP*DTP*DAP*DTP*DC COMPND 4 P*DTP*DGP*DC)-3'); COMPND 5 CHAIN: Y; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(*DAP*DAP*DGP*DCP*DAP*DGP*DAP*DTP*DAP*DAP*DGP*DTP*DCP*DTP*DTP*DAP*DT COMPND 10 P*DCP*DAP*DG)-3'); COMPND 11 CHAIN: Z; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: TRANS-ACTING T-CELL-SPECIFIC TRANSCRIPTION FACTOR GATA-3; COMPND 15 CHAIN: D, C; COMPND 16 FRAGMENT: UNP RESIDUES 308-370; COMPND 17 SYNONYM: GATA-BINDING FACTOR 3; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 7 ORGANISM_COMMON: MOUSE; SOURCE 8 ORGANISM_TAXID: 10090; SOURCE 9 GENE: GATA3, GATA-3; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: ROSETTA PLYS; SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS TRANSCRIPTION/DNA, ACTIVATOR, DNA-BINDING, METAL-BINDING, NUCLEUS, KEYWDS 2 TRANSCRIPTION, TRANSCRIPTION REGULATION, ZINC, ZINC-FINGER, KEYWDS 3 TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.L.BATES,G.K.KIM,L.GUO,L.CHEN REVDAT 4 25-OCT-17 3DFV 1 REMARK REVDAT 3 24-FEB-09 3DFV 1 VERSN REVDAT 2 26-AUG-08 3DFV 1 JRNL REVDAT 1 29-JUL-08 3DFV 0 JRNL AUTH D.L.BATES,Y.CHEN,G.KIM,L.GUO,L.CHEN JRNL TITL CRYSTAL STRUCTURES OF MULTIPLE GATA ZINC FINGERS BOUND TO JRNL TITL 2 DNA REVEAL NEW INSIGHTS INTO DNA RECOGNITION AND JRNL TITL 3 SELF-ASSOCIATION BY GATA. JRNL REF J.MOL.BIOL. V. 381 1292 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18621058 JRNL DOI 10.1016/J.JMB.2008.06.072 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 400.00 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 87.4 REMARK 3 NUMBER OF REFLECTIONS : 4032 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.276 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.300 REMARK 3 FREE R VALUE TEST SET COUNT : 336 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 884 REMARK 3 NUCLEIC ACID ATOMS : 814 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -35.14900 REMARK 3 B22 (A**2) : 14.62800 REMARK 3 B33 (A**2) : 20.52100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -19.08700 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.726 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 4.679 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.069 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 5.352 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 19.35 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CNS_TOPPAR:DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : CNS_TOPPAR:ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3DFV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000047986. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07810 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 4593 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.16400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 MM MG(OAC), CACODYLIC ACID, 30% PEG REMARK 280 4K, PH 6.5, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 68.98850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 17.87800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 68.98850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 17.87800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: Y, Z, D, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER D 308 REMARK 465 ALA D 309 REMARK 465 ALA D 310 REMARK 465 LYS D 367 REMARK 465 MET D 368 REMARK 465 SER D 369 REMARK 465 SER D 370 REMARK 465 SER C 308 REMARK 465 ALA C 309 REMARK 465 ALA C 310 REMARK 465 LYS C 367 REMARK 465 MET C 368 REMARK 465 SER C 369 REMARK 465 SER C 370 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN C 319 OE1 GLN C 321 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC Z 4 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG D 312 139.48 178.20 REMARK 500 ALA D 318 0.92 -58.86 REMARK 500 ASN D 319 -52.26 -135.01 REMARK 500 GLN D 321 -2.86 57.15 REMARK 500 THR D 323 51.85 -143.36 REMARK 500 THR D 324 95.69 -171.93 REMARK 500 THR D 326 -69.61 -4.69 REMARK 500 ALA D 332 36.96 -64.89 REMARK 500 ASN D 333 14.05 -148.29 REMARK 500 PRO D 336 138.56 -37.60 REMARK 500 ASN D 339 -55.37 -24.24 REMARK 500 ASN D 349 26.65 43.18 REMARK 500 ASN D 351 171.95 -48.64 REMARK 500 PRO D 353 103.85 -43.32 REMARK 500 THR D 355 -86.09 -43.42 REMARK 500 MET D 356 43.79 32.89 REMARK 500 LYS D 358 147.71 -38.73 REMARK 500 GLU D 359 -79.78 -75.31 REMARK 500 GLU D 359 -98.76 -60.11 REMARK 500 ILE D 361 2.94 166.28 REMARK 500 ARG D 364 -173.32 -68.86 REMARK 500 ARG C 312 140.36 168.41 REMARK 500 ALA C 318 0.04 -58.95 REMARK 500 ASN C 319 -51.79 -134.90 REMARK 500 THR C 323 51.92 -144.11 REMARK 500 THR C 324 95.84 -171.01 REMARK 500 THR C 326 -69.55 -4.83 REMARK 500 ALA C 332 36.86 -65.16 REMARK 500 ASN C 333 14.31 -148.28 REMARK 500 PRO C 336 138.55 -37.79 REMARK 500 ASN C 339 -56.59 -23.42 REMARK 500 ASN C 349 23.28 48.37 REMARK 500 ASN C 351 171.58 -48.43 REMARK 500 PRO C 353 104.28 -42.25 REMARK 500 GLU C 359 -79.89 -74.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DA Y 9 0.08 SIDE CHAIN REMARK 500 DA Z 7 0.05 SIDE CHAIN REMARK 500 DA Z 10 0.06 SIDE CHAIN REMARK 500 DT Z 15 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 30 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 317 SG REMARK 620 2 CYS D 320 SG 89.3 REMARK 620 3 CYS D 338 SG 87.5 75.0 REMARK 620 4 CYS D 341 SG 107.9 149.3 129.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 30 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 317 SG REMARK 620 2 CYS C 320 SG 93.4 REMARK 620 3 CYS C 338 SG 87.1 79.3 REMARK 620 4 CYS C 341 SG 104.2 151.6 123.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 30 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 30 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3DFX RELATED DB: PDB REMARK 900 OPPOSITE GATA DNA BINDING DBREF 3DFV D 308 370 UNP P23772 GATA3_MOUSE 308 370 DBREF 3DFV C 308 370 UNP P23772 GATA3_MOUSE 308 370 DBREF 3DFV Y 1 20 PDB 3DFV 3DFV 1 20 DBREF 3DFV Z 1 20 PDB 3DFV 3DFV 1 20 SEQRES 1 Y 20 DT DT DC DT DG DA DT DA DA DG DA DC DT SEQRES 2 Y 20 DT DA DT DC DT DG DC SEQRES 1 Z 20 DA DA DG DC DA DG DA DT DA DA DG DT DC SEQRES 2 Z 20 DT DT DA DT DC DA DG SEQRES 1 D 63 SER ALA ALA ARG ARG ALA GLY THR SER CYS ALA ASN CYS SEQRES 2 D 63 GLN THR THR THR THR THR LEU TRP ARG ARG ASN ALA ASN SEQRES 3 D 63 GLY ASP PRO VAL CYS ASN ALA CYS GLY LEU TYR TYR LYS SEQRES 4 D 63 LEU HIS ASN ILE ASN ARG PRO LEU THR MET LYS LYS GLU SEQRES 5 D 63 GLY ILE GLN THR ARG ASN ARG LYS MET SER SER SEQRES 1 C 63 SER ALA ALA ARG ARG ALA GLY THR SER CYS ALA ASN CYS SEQRES 2 C 63 GLN THR THR THR THR THR LEU TRP ARG ARG ASN ALA ASN SEQRES 3 C 63 GLY ASP PRO VAL CYS ASN ALA CYS GLY LEU TYR TYR LYS SEQRES 4 C 63 LEU HIS ASN ILE ASN ARG PRO LEU THR MET LYS LYS GLU SEQRES 5 C 63 GLY ILE GLN THR ARG ASN ARG LYS MET SER SER HET ZN D 30 1 HET ZN C 30 1 HETNAM ZN ZINC ION FORMUL 5 ZN 2(ZN 2+) HELIX 1 1 ASN D 339 ASN D 349 1 11 HELIX 2 2 PRO D 353 LYS D 357 5 5 HELIX 3 3 ASN C 339 ASN C 349 1 11 HELIX 4 4 PRO C 353 LYS C 357 5 5 SHEET 1 A 2 TRP D 328 ARG D 330 0 SHEET 2 A 2 PRO D 336 CYS D 338 -1 O VAL D 337 N ARG D 329 SHEET 1 B 2 TRP C 328 ARG C 330 0 SHEET 2 B 2 PRO C 336 CYS C 338 -1 O VAL C 337 N ARG C 329 SSBOND 1 CYS D 320 CYS D 338 1555 1555 3.00 LINK SG CYS D 317 ZN ZN D 30 1555 1555 2.37 LINK SG CYS D 320 ZN ZN D 30 1555 1555 2.43 LINK SG CYS D 338 ZN ZN D 30 1555 1555 2.49 LINK SG CYS D 341 ZN ZN D 30 1555 1555 2.30 LINK SG CYS C 317 ZN ZN C 30 1555 1555 2.34 LINK SG CYS C 320 ZN ZN C 30 1555 1555 2.28 LINK SG CYS C 338 ZN ZN C 30 1555 1555 2.43 LINK SG CYS C 341 ZN ZN C 30 1555 1555 2.43 SITE 1 AC1 4 CYS D 317 CYS D 320 CYS D 338 CYS D 341 SITE 1 AC2 4 CYS C 317 CYS C 320 CYS C 338 CYS C 341 CRYST1 137.977 35.756 54.487 90.00 113.25 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007248 0.000000 0.003114 0.00000 SCALE2 0.000000 0.027967 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019975 0.00000