PDB Short entry for 3DJJ HEADER OXIDOREDUCTASE 23-JUN-08 3DJJ TITLE CATALYTIC CYCLE OF HUMAN GLUTATHIONE REDUCTASE NEAR 1 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTATHIONE REDUCTASE, MITOCHONDRIAL PRECURSOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 45 TO 522; COMPND 5 SYNONYM: GRASE, GR; COMPND 6 EC: 1.8.1.7; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GSR, GLUR, GRD1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FLAVOENZYME, GLUTATHIONE, NICOTINAMIDE, ALTERNATIVE INITIATION, FAD, KEYWDS 2 FLAVOPROTEIN, MITOCHONDRION, NADP, OXIDOREDUCTASE, PHOSPHOPROTEIN, KEYWDS 3 REDOX-ACTIVE CENTER, TRANSIT PEPTIDE EXPDTA X-RAY DIFFRACTION AUTHOR D.S.BERKHOLZ,H.R.FABER,S.N.SAVVIDES,P.A.KARPLUS REVDAT 6 25-OCT-17 3DJJ 1 REMARK REVDAT 5 25-DEC-13 3DJJ 1 AUTHOR REVDAT 4 13-JUL-11 3DJJ 1 VERSN REVDAT 3 24-FEB-09 3DJJ 1 VERSN REVDAT 2 16-SEP-08 3DJJ 1 JRNL REVDAT 1 05-AUG-08 3DJJ 0 JRNL AUTH D.S.BERKHOLZ,H.R.FABER,S.N.SAVVIDES,P.A.KARPLUS JRNL TITL CATALYTIC CYCLE OF HUMAN GLUTATHIONE REDUCTASE NEAR 1 A JRNL TITL 2 RESOLUTION. JRNL REF J.MOL.BIOL. V. 382 371 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18638483 JRNL DOI 10.1016/J.JMB.2008.06.083 REMARK 2 REMARK 2 RESOLUTION. 1.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELX REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 100.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.9 REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.113 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.147 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 8980 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 193565 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : NULL REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.110 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.144 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : 8548 REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 183473 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3496 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 178 REMARK 3 SOLVENT ATOMS : 878 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : NULL REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : NULL REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : NULL REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : NULL REMARK 3 NUMBER OF RESTRAINTS : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.104 REMARK 3 ANGLE DISTANCES (A) : 0.111 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.029 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.087 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.105 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.030 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.006 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.054 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.103 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH & HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3DJJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000048116. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAR-00 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 233920 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 37.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 55.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.22100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3% AMMONIUM SULFATE, 0.1 M POTASSIUM REMARK 280 PHOSPHATE AND 0.1% BETA-OCTYL GLUCOSIDE, PH 7.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K, PH 7.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 59.83600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.17900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 59.83600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.17900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -136.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 74.71279 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 71.14593 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 CYS A 2 REMARK 465 ARG A 3 REMARK 465 GLN A 4 REMARK 465 GLU A 5 REMARK 465 PRO A 6 REMARK 465 GLN A 7 REMARK 465 PRO A 8 REMARK 465 GLN A 9 REMARK 465 GLY A 10 REMARK 465 PRO A 11 REMARK 465 PRO A 12 REMARK 465 PRO A 13 REMARK 465 ALA A 14 REMARK 465 ALA A 15 REMARK 465 GLY A 16 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 93 CG CD CE NZ REMARK 470 LYS A 296 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 21 CG - CD1 - CE1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 37 CD - NE - CZ ANGL. DEV. = 24.6 DEGREES REMARK 500 ARG A 37 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 38 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 45 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 HIS A 82 CA - CB - CG ANGL. DEV. = 13.3 DEGREES REMARK 500 ARG A 97 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 TYR A 114 CB - CG - CD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 TYR A 114 CG - CD2 - CE2 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG A 127 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ASP A 135 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 MET A 202 CG - SD - CE ANGL. DEV. = 13.1 DEGREES REMARK 500 MET A 265 CA - CB - CG ANGL. DEV. = 10.4 DEGREES REMARK 500 MET A 265 CG - SD - CE ANGL. DEV. = 9.6 DEGREES REMARK 500 ARG A 272 CD - NE - CZ ANGL. DEV. = 12.3 DEGREES REMARK 500 ARG A 272 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 272 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 291 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 ASP A 309 CB - CG - OD1 ANGL. DEV. = 7.6 DEGREES REMARK 500 ARG A 347 NE - CZ - NH1 ANGL. DEV. = -4.3 DEGREES REMARK 500 CYS A 417 CB - CA - C ANGL. DEV. = -28.8 DEGREES REMARK 500 CYS A 417 N - CA - CB ANGL. DEV. = -15.9 DEGREES REMARK 500 CYS A 417 CA - CB - SG ANGL. DEV. = -24.9 DEGREES REMARK 500 MET A 435 CG - SD - CE ANGL. DEV. = -10.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 52 -123.16 -130.17 REMARK 500 VAL A 61 29.21 -142.50 REMARK 500 CYS A 90 61.04 -119.73 REMARK 500 CYS A 90 116.16 -169.55 REMARK 500 GLU A 91 43.22 -91.66 REMARK 500 ALA A 195 22.06 -148.18 REMARK 500 HIS A 219 -149.21 -115.86 REMARK 500 ASN A 425 177.94 66.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 SO4 A 3584 REMARK 610 SO4 A 3585 REMARK 610 SO4 A 3586 REMARK 610 SO4 A 3587 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 481 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 482 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 485 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 486 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 487 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 3584 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 3585 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 3586 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 3587 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 479 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP A 480 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 608 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3DJG RELATED DB: PDB REMARK 900 THE SAME PROTEIN-LIGAND COMPLEX AT LOWER RESOLUTION AND ROOM REMARK 900 TEMPERATURE INSTEAD OF CRYOTEMPERATURE. DBREF 3DJJ A 1 478 UNP P00390 GSHR_HUMAN 45 522 SEQRES 1 A 478 ALA CYS ARG GLN GLU PRO GLN PRO GLN GLY PRO PRO PRO SEQRES 2 A 478 ALA ALA GLY ALA VAL ALA SER TYR ASP TYR LEU VAL ILE SEQRES 3 A 478 GLY GLY GLY SER GLY GLY LEU ALA SER ALA ARG ARG ALA SEQRES 4 A 478 ALA GLU LEU GLY ALA ARG ALA ALA VAL VAL GLU SER HIS SEQRES 5 A 478 LYS LEU GLY GLY THR CYS VAL ASN VAL GLY CYS VAL PRO SEQRES 6 A 478 LYS LYS VAL MET TRP ASN THR ALA VAL HIS SER GLU PHE SEQRES 7 A 478 MET HIS ASP HIS ALA ASP TYR GLY PHE PRO SER CYS GLU SEQRES 8 A 478 GLY LYS PHE ASN TRP ARG VAL ILE LYS GLU LYS ARG ASP SEQRES 9 A 478 ALA TYR VAL SER ARG LEU ASN ALA ILE TYR GLN ASN ASN SEQRES 10 A 478 LEU THR LYS SER HIS ILE GLU ILE ILE ARG GLY HIS ALA SEQRES 11 A 478 ALA PHE THR SER ASP PRO LYS PRO THR ILE GLU VAL SER SEQRES 12 A 478 GLY LYS LYS TYR THR ALA PRO HIS ILE LEU ILE ALA THR SEQRES 13 A 478 GLY GLY MET PRO SER THR PRO HIS GLU SER GLN ILE PRO SEQRES 14 A 478 GLY ALA SER LEU GLY ILE THR SER ASP GLY PHE PHE GLN SEQRES 15 A 478 LEU GLU GLU LEU PRO GLY ARG SER VAL ILE VAL GLY ALA SEQRES 16 A 478 GLY TYR ILE ALA VAL GLU MET ALA GLY ILE LEU SER ALA SEQRES 17 A 478 LEU GLY SER LYS THR SER LEU MET ILE ARG HIS ASP LYS SEQRES 18 A 478 VAL LEU ARG SER PHE ASP SER MET ILE SER THR ASN CYS SEQRES 19 A 478 THR GLU GLU LEU GLU ASN ALA GLY VAL GLU VAL LEU LYS SEQRES 20 A 478 PHE SER GLN VAL LYS GLU VAL LYS LYS THR LEU SER GLY SEQRES 21 A 478 LEU GLU VAL SER MET VAL THR ALA VAL PRO GLY ARG LEU SEQRES 22 A 478 PRO VAL MET THR MET ILE PRO ASP VAL ASP CYS LEU LEU SEQRES 23 A 478 TRP ALA ILE GLY ARG VAL PRO ASN THR LYS ASP LEU SER SEQRES 24 A 478 LEU ASN LYS LEU GLY ILE GLN THR ASP ASP LYS GLY HIS SEQRES 25 A 478 ILE ILE VAL ASP GLU PHE GLN ASN THR ASN VAL LYS GLY SEQRES 26 A 478 ILE TYR ALA VAL GLY ASP VAL CYS GLY LYS ALA LEU LEU SEQRES 27 A 478 THR PRO VAL ALA ILE ALA ALA GLY ARG LYS LEU ALA HIS SEQRES 28 A 478 ARG LEU PHE GLU TYR LYS GLU ASP SER LYS LEU ASP TYR SEQRES 29 A 478 ASN ASN ILE PRO THR VAL VAL PHE SER HIS PRO PRO ILE SEQRES 30 A 478 GLY THR VAL GLY LEU THR GLU ASP GLU ALA ILE HIS LYS SEQRES 31 A 478 TYR GLY ILE GLU ASN VAL LYS THR TYR SER THR SER PHE SEQRES 32 A 478 THR PRO MET TYR HIS ALA VAL THR LYS ARG LYS THR LYS SEQRES 33 A 478 CYS VAL MET LYS MET VAL CYS ALA ASN LYS GLU GLU LYS SEQRES 34 A 478 VAL VAL GLY ILE HIS MET GLN GLY LEU GLY CYS ASP GLU SEQRES 35 A 478 MET LEU GLN GLY PHE ALA VAL ALA VAL LYS MET GLY ALA SEQRES 36 A 478 THR LYS ALA ASP PHE ASP ASN THR VAL ALA ILE HIS PRO SEQRES 37 A 478 THR SER SER GLU GLU LEU VAL THR LEU ARG HET PO4 A 481 5 HET PO4 A 482 5 HET PO4 A 485 5 HET PO4 A 486 5 HET PO4 A 487 5 HET SO4 A3584 1 HET SO4 A3585 1 HET SO4 A3586 1 HET SO4 A3587 1 HET FAD A 479 53 HET NDP A 480 48 HET GOL A 601 6 HET GOL A 602 6 HET GOL A 603 6 HET GOL A 604 6 HET GOL A 605 6 HET GOL A 606 6 HET GOL A 607 6 HET GOL A 608 6 HETNAM PO4 PHOSPHATE ION HETNAM SO4 SULFATE ION HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 PO4 5(O4 P 3-) FORMUL 7 SO4 4(O4 S 2-) FORMUL 11 FAD C27 H33 N9 O15 P2 FORMUL 12 NDP C21 H30 N7 O17 P3 FORMUL 13 GOL 8(C3 H8 O3) FORMUL 21 HOH *878(H2 O) HELIX 1 1 GLY A 29 LEU A 42 1 14 HELIX 2 2 GLY A 55 GLY A 62 1 8 HELIX 3 3 GLY A 62 HIS A 80 1 19 HELIX 4 4 ASN A 95 SER A 121 1 27 HELIX 5 5 GLY A 170 GLY A 174 5 5 HELIX 6 6 THR A 176 PHE A 181 1 6 HELIX 7 7 GLY A 196 LEU A 209 1 14 HELIX 8 8 ASP A 227 ALA A 241 1 15 HELIX 9 9 SER A 299 LEU A 303 5 5 HELIX 10 10 GLY A 330 GLY A 334 5 5 HELIX 11 11 LEU A 338 GLU A 355 1 18 HELIX 12 12 THR A 383 GLY A 392 1 10 HELIX 13 13 PRO A 405 THR A 411 5 7 HELIX 14 14 GLY A 439 MET A 453 1 15 HELIX 15 15 THR A 456 ASN A 462 1 7 HELIX 16 16 SER A 470 THR A 476 5 7 SHEET 1 A 4 VAL A 18 SER A 20 0 SHEET 2 A 4 LYS A 145 THR A 148 1 O THR A 148 N ALA A 19 SHEET 3 A 4 THR A 139 VAL A 142 -1 N ILE A 140 O TYR A 147 SHEET 4 A 4 ALA A 130 PHE A 132 -1 N ALA A 131 O GLU A 141 SHEET 1 B 5 GLU A 124 ARG A 127 0 SHEET 2 B 5 ALA A 46 GLU A 50 1 N VAL A 48 O ILE A 126 SHEET 3 B 5 TYR A 23 ILE A 26 1 N VAL A 25 O VAL A 49 SHEET 4 B 5 ILE A 152 ILE A 154 1 O LEU A 153 N ILE A 26 SHEET 5 B 5 ILE A 326 ALA A 328 1 O TYR A 327 N ILE A 154 SHEET 1 C 2 GLY A 158 PRO A 160 0 SHEET 2 C 2 ARG A 291 PRO A 293 -1 O VAL A 292 N MET A 159 SHEET 1 D 4 GLU A 244 LEU A 246 0 SHEET 2 D 4 LYS A 212 MET A 216 1 N LEU A 215 O LEU A 246 SHEET 3 D 4 ARG A 189 VAL A 193 1 N ILE A 192 O MET A 216 SHEET 4 D 4 CYS A 284 TRP A 287 1 O LEU A 286 N VAL A 193 SHEET 1 E 3 SER A 249 THR A 257 0 SHEET 2 E 3 GLY A 260 THR A 267 -1 O GLY A 260 N THR A 257 SHEET 3 E 3 VAL A 275 VAL A 282 -1 O VAL A 282 N LEU A 261 SHEET 1 F 5 THR A 369 VAL A 371 0 SHEET 2 F 5 ILE A 377 GLY A 381 -1 O ILE A 377 N VAL A 371 SHEET 3 F 5 LYS A 429 GLN A 436 -1 O MET A 435 N GLY A 378 SHEET 4 F 5 CYS A 417 ALA A 424 -1 N VAL A 422 O GLY A 432 SHEET 5 F 5 VAL A 396 PHE A 403 -1 N TYR A 399 O MET A 421 CISPEP 1 HIS A 374 PRO A 375 0 -3.75 CISPEP 2 HIS A 467 PRO A 468 0 -13.18 SITE 1 AC1 9 ARG A 37 ARG A 347 HOH A1022 HOH A1158 SITE 2 AC1 9 HOH A1190 HOH A1191 HOH A1287 HOH A1434 SITE 3 AC1 9 HOH A2795 SITE 1 AC2 10 ARG A 218 HIS A 219 THR A 257 LEU A 258 SITE 2 AC2 10 SER A 259 HOH A1321 HOH A1360 HOH A1407 SITE 3 AC2 10 HOH A1640 HOH A1767 SITE 1 AC3 8 ARG A 38 ARG A 347 HOH A1235 HOH A1260 SITE 2 AC3 8 HOH A1344 HOH A1433 HOH A1574 HOH A2378 SITE 1 AC4 8 THR A 176 ASP A 178 GLY A 179 HOH A1406 SITE 2 AC4 8 HOH A1622 HOH A1668 HOH A1736 HOH A3186 SITE 1 AC5 9 LYS A 53 LEU A 54 ASN A 111 GLN A 115 SITE 2 AC5 9 ARG A 127 HOH A1301 HOH A1506 HOH A1611 SITE 3 AC5 9 HOH A3605 SITE 1 AC6 2 LYS A 120 HOH A1118 SITE 1 AC7 3 HOH A1258 HOH A3507 HOH A3788 SITE 1 AC8 4 THR A 404 THR A 415 HOH A1595 HOH A1779 SITE 1 AC9 2 ASP A 385 HOH A3760 SITE 1 BC1 38 GLY A 27 GLY A 29 SER A 30 GLY A 31 SITE 2 BC1 38 GLU A 50 SER A 51 GLY A 56 THR A 57 SITE 3 BC1 38 CYS A 58 GLY A 62 CYS A 63 LYS A 66 SITE 4 BC1 38 GLY A 128 HIS A 129 ALA A 130 ALA A 155 SITE 5 BC1 38 THR A 156 GLY A 157 ARG A 291 ASN A 294 SITE 6 BC1 38 LEU A 298 GLY A 330 ASP A 331 LEU A 337 SITE 7 BC1 38 LEU A 338 THR A 339 PRO A 340 PHE A 372 SITE 8 BC1 38 HIS A 467 PRO A 468 HOH A1001 HOH A1002 SITE 9 BC1 38 HOH A1007 HOH A1024 HOH A1063 HOH A1084 SITE 10 BC1 38 HOH A1269 HOH A1425 SITE 1 BC2 32 ALA A 195 GLY A 196 TYR A 197 ILE A 198 SITE 2 BC2 32 GLU A 201 ARG A 218 ARG A 224 ILE A 289 SITE 3 BC2 32 GLY A 290 ARG A 291 LEU A 337 LEU A 338 SITE 4 BC2 32 HOH A1023 HOH A1027 HOH A1034 HOH A1066 SITE 5 BC2 32 HOH A1097 HOH A1113 HOH A1119 HOH A1243 SITE 6 BC2 32 HOH A1257 HOH A1300 HOH A1566 HOH A1568 SITE 7 BC2 32 HOH A1580 HOH A1614 HOH A1674 HOH A2125 SITE 8 BC2 32 HOH A2505 HOH A2513 HOH A3177 HOH A3201 SITE 1 BC3 7 TYR A 197 ALA A 336 HOH A1105 HOH A1219 SITE 2 BC3 7 HOH A1300 HOH A1382 HOH A1538 SITE 1 BC4 8 SER A 228 MET A 229 LYS A 420 HOH A1298 SITE 2 BC4 8 HOH A1533 HOH A1756 HOH A1828 HOH A3521 SITE 1 BC5 9 LYS A 324 GLY A 325 TYR A 327 ARG A 352 SITE 2 BC5 9 HOH A1069 HOH A1203 HOH A1285 HOH A1384 SITE 3 BC5 9 HOH A1445 SITE 1 BC6 8 TYR A 364 ASN A 365 ASN A 366 ILE A 367 SITE 2 BC6 8 GLY A 381 HOH A1538 HOH A1695 HOH A3008 SITE 1 BC7 7 GLU A 101 LYS A 102 ALA A 105 HIS A 122 SITE 2 BC7 7 HOH A1068 HOH A1152 HOH A1798 SITE 1 BC8 9 MET A 265 THR A 267 THR A 277 ASP A 309 SITE 2 BC8 9 HOH A1102 HOH A1383 HOH A1423 HOH A1571 SITE 3 BC8 9 HOH A2683 SITE 1 BC9 7 ASN A 111 ALA A 112 GLN A 115 GLU A 355 SITE 2 BC9 7 HOH A1316 HOH A1506 HOH A9004 SITE 1 CC1 11 SER A 225 PHE A 226 THR A 379 HOH A1041 SITE 2 CC1 11 HOH A1108 HOH A1159 HOH A1760 HOH A2763 SITE 3 CC1 11 HOH A3005 HOH A3008 HOH A3134 CRYST1 119.672 62.358 84.161 90.00 122.29 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008356 0.000000 0.005281 0.00000 SCALE2 0.000000 0.016036 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014056 0.00000