PDB Short entry for 3DXE HEADER PROTEIN BINDING 24-JUL-08 3DXE TITLE CRYSTAL STRUCTURE OF THE INTRACELLULAR DOMAIN OF HUMAN APP (T668A TITLE 2 MUTANT) IN COMPLEX WITH FE65-PTB2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMYLOID BETA A4 PROTEIN-BINDING FAMILY B MEMBER 1; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: PTB2 DOMAIN, UNP RESIDUES 534-667; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: AMYLOID BETA A4 PROTEIN; COMPND 8 CHAIN: B, D; COMPND 9 FRAGMENT: APP INTRACELLULAR DOMAIN, UNP RESIDUES 739-770; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: APBB1, FE65, RIR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21D; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: APP, A4, AD1; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIL; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PETTRX_1B KEYWDS ALZHEIMER'S DISEASE, APP, AICD, FE65, PTB DOMAIN, ALZHEIMER DISEASE, KEYWDS 2 AMYLOID, APOPTOSIS, CELL ADHESION, COATED PIT, DISEASE MUTATION, KEYWDS 3 ENDOCYTOSIS, GLYCOPROTEIN, HEPARIN-BINDING, IRON, MEMBRANE, METAL- KEYWDS 4 BINDING, NOTCH SIGNALING PATHWAY, PHOSPHOPROTEIN, PROTEASE KEYWDS 5 INHIBITOR, PROTEOGLYCAN, SERINE PROTEASE INHIBITOR, TRANSMEMBRANE, KEYWDS 6 PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR J.RADZIMANOWSKI,I.SINNING,K.WILD REVDAT 6 21-FEB-24 3DXE 1 REMARK REVDAT 5 20-OCT-21 3DXE 1 SEQADV REVDAT 4 01-FEB-17 3DXE 1 JRNL VERSN REVDAT 3 24-FEB-09 3DXE 1 VERSN REVDAT 2 18-NOV-08 3DXE 1 JRNL REVDAT 1 16-SEP-08 3DXE 0 JRNL AUTH J.RADZIMANOWSKI,B.SIMON,M.SATTLER,K.BEYREUTHER,I.SINNING, JRNL AUTH 2 K.WILD JRNL TITL STRUCTURE OF THE INTRACELLULAR DOMAIN OF THE AMYLOID JRNL TITL 2 PRECURSOR PROTEIN IN COMPLEX WITH FE65-PTB2. JRNL REF EMBO REP. V. 9 1134 2008 JRNL REFN ISSN 1469-221X JRNL PMID 18833287 JRNL DOI 10.1038/EMBOR.2008.188 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.RADZIMANOWSKI,K.BEYREUTHER,I.SINNING,K.WILD REMARK 1 TITL OVERPRODUCTION, PURIFICATION, CRYSTALLIZATION AND REMARK 1 TITL 2 PRELIMINARY X-RAY ANALYSIS OF HUMAN FE65-PTB2 IN COMPLEX REMARK 1 TITL 3 WITH THE AMYLOID PRECURSOR PROTEIN INTRACELLULAR DOMAIN REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. F64 409 2008 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 18453713 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0008 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 37351 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1893 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2618 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.2790 REMARK 3 BIN FREE R VALUE SET COUNT : 127 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2400 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 236 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.139 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.136 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.091 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.167 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2496 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3393 ; 1.569 ; 1.933 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 312 ; 6.624 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 117 ;34.153 ;23.846 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 396 ;15.773 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;13.537 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 372 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1928 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1072 ; 0.216 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1693 ; 0.295 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 176 ; 0.181 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 48 ; 0.238 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.211 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1613 ; 1.315 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2507 ; 2.045 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1021 ; 2.707 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 884 ; 3.936 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3DXE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000048608. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.975 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37351 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 60.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 15.00 REMARK 200 R MERGE (I) : 0.11900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : 15.40 REMARK 200 R MERGE FOR SHELL (I) : 0.61200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.2 M NACL, 0.1 M SODIUM ACETATE , PH REMARK 280 4.6, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 25.17433 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 50.34867 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 37.76150 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 62.93583 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 12.58717 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS TWO COPIES OF A PROTEIN REMARK 300 PROTEIN COMPLEX (ONE BIOMOLECULE 1 BINDS ONE BIOMOLECULE 2). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 534 REMARK 465 PRO A 535 REMARK 465 LYS A 536 REMARK 465 ASN A 537 REMARK 465 GLU A 538 REMARK 465 LEU A 539 REMARK 465 VAL A 540 REMARK 465 GLN A 541 REMARK 465 LYS A 542 REMARK 465 GLN A 667 REMARK 465 HIS A 668 REMARK 465 HIS A 669 REMARK 465 HIS A 670 REMARK 465 HIS A 671 REMARK 465 HIS A 672 REMARK 465 HIS A 673 REMARK 465 GLY B 661 REMARK 465 ALA B 662 REMARK 465 MET B 663 REMARK 465 ASP B 664 REMARK 465 ALA B 665 REMARK 465 ALA B 666 REMARK 465 GLN B 694 REMARK 465 ASN B 695 REMARK 465 ALA C 534 REMARK 465 PRO C 535 REMARK 465 LYS C 536 REMARK 465 GLN C 667 REMARK 465 HIS C 668 REMARK 465 HIS C 669 REMARK 465 HIS C 670 REMARK 465 HIS C 671 REMARK 465 HIS C 672 REMARK 465 HIS C 673 REMARK 465 GLY D 661 REMARK 465 ALA D 662 REMARK 465 MET D 663 REMARK 465 ASP D 664 REMARK 465 ALA D 665 REMARK 465 ALA D 666 REMARK 465 GLN D 694 REMARK 465 ASN D 695 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET B 677 CG - SD - CE ANGL. DEV. = -12.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3DXC RELATED DB: PDB REMARK 900 RELATED ID: 3DXD RELATED DB: PDB DBREF 3DXE A 534 667 UNP O00213 APBB1_HUMAN 534 667 DBREF 3DXE B 664 695 UNP P05067 A4_HUMAN 739 770 DBREF 3DXE C 534 667 UNP O00213 APBB1_HUMAN 534 667 DBREF 3DXE D 664 695 UNP P05067 A4_HUMAN 739 770 SEQADV 3DXE HIS A 668 UNP O00213 EXPRESSION TAG SEQADV 3DXE HIS A 669 UNP O00213 EXPRESSION TAG SEQADV 3DXE HIS A 670 UNP O00213 EXPRESSION TAG SEQADV 3DXE HIS A 671 UNP O00213 EXPRESSION TAG SEQADV 3DXE HIS A 672 UNP O00213 EXPRESSION TAG SEQADV 3DXE HIS A 673 UNP O00213 EXPRESSION TAG SEQADV 3DXE GLY B 661 UNP P05067 EXPRESSION TAG SEQADV 3DXE ALA B 662 UNP P05067 EXPRESSION TAG SEQADV 3DXE MET B 663 UNP P05067 EXPRESSION TAG SEQADV 3DXE ALA B 668 UNP P05067 THR 743 ENGINEERED MUTATION SEQADV 3DXE HIS C 668 UNP O00213 EXPRESSION TAG SEQADV 3DXE HIS C 669 UNP O00213 EXPRESSION TAG SEQADV 3DXE HIS C 670 UNP O00213 EXPRESSION TAG SEQADV 3DXE HIS C 671 UNP O00213 EXPRESSION TAG SEQADV 3DXE HIS C 672 UNP O00213 EXPRESSION TAG SEQADV 3DXE HIS C 673 UNP O00213 EXPRESSION TAG SEQADV 3DXE GLY D 661 UNP P05067 EXPRESSION TAG SEQADV 3DXE ALA D 662 UNP P05067 EXPRESSION TAG SEQADV 3DXE MET D 663 UNP P05067 EXPRESSION TAG SEQADV 3DXE ALA D 668 UNP P05067 THR 743 ENGINEERED MUTATION SEQRES 1 A 140 ALA PRO LYS ASN GLU LEU VAL GLN LYS PHE GLN VAL TYR SEQRES 2 A 140 TYR LEU GLY ASN VAL PRO VAL ALA LYS PRO VAL GLY VAL SEQRES 3 A 140 ASP VAL ILE ASN GLY ALA LEU GLU SER VAL LEU SER SER SEQRES 4 A 140 SER SER ARG GLU GLN TRP THR PRO SER HIS VAL SER VAL SEQRES 5 A 140 ALA PRO ALA THR LEU THR ILE LEU HIS GLN GLN THR GLU SEQRES 6 A 140 ALA VAL LEU GLY GLU CYS ARG VAL ARG PHE LEU SER PHE SEQRES 7 A 140 LEU ALA VAL GLY ARG ASP VAL HIS THR PHE ALA PHE ILE SEQRES 8 A 140 MET ALA ALA GLY PRO ALA SER PHE CYS CYS HIS MET PHE SEQRES 9 A 140 TRP CYS GLU PRO ASN ALA ALA SER LEU SER GLU ALA VAL SEQRES 10 A 140 GLN ALA ALA CYS MET LEU ARG TYR GLN LYS CYS LEU ASP SEQRES 11 A 140 ALA ARG SER GLN HIS HIS HIS HIS HIS HIS SEQRES 1 B 35 GLY ALA MET ASP ALA ALA VAL ALA PRO GLU GLU ARG HIS SEQRES 2 B 35 LEU SER LYS MET GLN GLN ASN GLY TYR GLU ASN PRO THR SEQRES 3 B 35 TYR LYS PHE PHE GLU GLN MET GLN ASN SEQRES 1 C 140 ALA PRO LYS ASN GLU LEU VAL GLN LYS PHE GLN VAL TYR SEQRES 2 C 140 TYR LEU GLY ASN VAL PRO VAL ALA LYS PRO VAL GLY VAL SEQRES 3 C 140 ASP VAL ILE ASN GLY ALA LEU GLU SER VAL LEU SER SER SEQRES 4 C 140 SER SER ARG GLU GLN TRP THR PRO SER HIS VAL SER VAL SEQRES 5 C 140 ALA PRO ALA THR LEU THR ILE LEU HIS GLN GLN THR GLU SEQRES 6 C 140 ALA VAL LEU GLY GLU CYS ARG VAL ARG PHE LEU SER PHE SEQRES 7 C 140 LEU ALA VAL GLY ARG ASP VAL HIS THR PHE ALA PHE ILE SEQRES 8 C 140 MET ALA ALA GLY PRO ALA SER PHE CYS CYS HIS MET PHE SEQRES 9 C 140 TRP CYS GLU PRO ASN ALA ALA SER LEU SER GLU ALA VAL SEQRES 10 C 140 GLN ALA ALA CYS MET LEU ARG TYR GLN LYS CYS LEU ASP SEQRES 11 C 140 ALA ARG SER GLN HIS HIS HIS HIS HIS HIS SEQRES 1 D 35 GLY ALA MET ASP ALA ALA VAL ALA PRO GLU GLU ARG HIS SEQRES 2 D 35 LEU SER LYS MET GLN GLN ASN GLY TYR GLU ASN PRO THR SEQRES 3 D 35 TYR LYS PHE PHE GLU GLN MET GLN ASN FORMUL 5 HOH *236(H2 O) HELIX 1 1 GLY A 558 SER A 572 1 15 HELIX 2 2 SER A 573 TRP A 578 5 6 HELIX 3 3 ALA A 643 SER A 666 1 24 HELIX 4 4 ALA B 668 ASN B 680 1 13 HELIX 5 5 ASN B 684 MET B 693 1 10 HELIX 6 6 GLY C 558 SER C 572 1 15 HELIX 7 7 ALA C 643 SER C 666 1 24 HELIX 8 8 ALA D 668 ASN D 680 1 13 HELIX 9 9 ASN D 684 GLN D 692 1 9 SHEET 1 A 8 VAL A 600 ARG A 605 0 SHEET 2 A 8 THR A 589 HIS A 594 -1 N ILE A 592 O LEU A 601 SHEET 3 A 8 THR A 579 VAL A 585 -1 N SER A 584 O THR A 591 SHEET 4 A 8 GLN A 544 VAL A 553 -1 N TYR A 547 O THR A 579 SHEET 5 A 8 SER A 631 GLU A 640 -1 O CYS A 634 N VAL A 551 SHEET 6 A 8 THR A 620 GLY A 628 -1 N MET A 625 O CYS A 633 SHEET 7 A 8 LEU A 609 VAL A 614 -1 N PHE A 611 O ILE A 624 SHEET 8 A 8 TYR B 682 GLU B 683 -1 O TYR B 682 N LEU A 612 SHEET 1 B 8 VAL C 600 ARG C 605 0 SHEET 2 B 8 THR C 589 HIS C 594 -1 N ILE C 592 O LEU C 601 SHEET 3 B 8 THR C 579 VAL C 585 -1 N HIS C 582 O LEU C 593 SHEET 4 B 8 PHE C 543 VAL C 553 -1 N VAL C 545 O SER C 581 SHEET 5 B 8 SER C 631 TRP C 638 -1 O CYS C 634 N VAL C 551 SHEET 6 B 8 THR C 620 GLY C 628 -1 N MET C 625 O CYS C 633 SHEET 7 B 8 LEU C 609 VAL C 614 -1 N PHE C 611 O ILE C 624 SHEET 8 B 8 TYR D 682 GLU D 683 -1 O TYR D 682 N LEU C 612 CISPEP 1 GLU A 640 PRO A 641 0 -2.42 CISPEP 2 GLU C 640 PRO C 641 0 4.63 CRYST1 115.377 115.377 75.523 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008667 0.005004 0.000000 0.00000 SCALE2 0.000000 0.010008 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013241 0.00000