PDB Short entry for 3DYD HEADER TRANSFERASE 27-JUL-08 3DYD TITLE HUMAN TYROSINE AMINOTRANSFERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE AMINOTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: L-TYROSINE:2-OXOGLUTARATE AMINOTRANSFERASE, TAT; COMPND 5 EC: 2.6.1.5; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TAT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) R3 PRARE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC-BSA4 KEYWDS PLP, TYROSINE, SGC, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, AMINOTRANSFERASE, DISEASE MUTATION, PHENYLALANINE KEYWDS 3 CATABOLISM, PYRIDOXAL PHOSPHATE, TRANSFERASE, TYROSINE CATABOLISM EXPDTA X-RAY DIFFRACTION AUTHOR T.KARLBERG,M.MOCHE,J.ANDERSSON,C.H.ARROWSMITH,H.BERGLUND,R.COLLINS, AUTHOR 2 L.G.DAHLGREN,A.M.EDWARDS,S.FLODIN,A.FLORES,S.GRASLUND,M.HAMMARSTROM, AUTHOR 3 A.JOHANSSON,I.JOHANSSON,T.KOTENYOVA,L.LEHTIO,M.E.NILSSON,P.NORDLUND, AUTHOR 4 T.NYMAN,K.OLESEN,C.PERSSON,J.SAGEMARK,A.G.THORSELL,L.TRESAUGUES, AUTHOR 5 S.VAN DEN BERG,J.WEIGELT,M.WELIN,M.WIKSTROM,M.WISNIEWSKA,H.SCHULER, AUTHOR 6 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 5 30-AUG-23 3DYD 1 REMARK SEQADV LINK REVDAT 4 24-JAN-18 3DYD 1 JRNL REVDAT 3 13-JUL-11 3DYD 1 VERSN REVDAT 2 24-FEB-09 3DYD 1 VERSN REVDAT 1 19-AUG-08 3DYD 0 JRNL AUTH T.KARLBERG,M.MOCHE,J.ANDERSSON,C.H.ARROWSMITH,H.BERGLUND, JRNL AUTH 2 R.COLLINS,L.G.DAHLGREN,A.M.EDWARDS,S.FLODIN,A.FLORES, JRNL AUTH 3 S.GRASLUND,M.HAMMARSTROM,A.JOHANSSON,I.JOHANSSON, JRNL AUTH 4 T.KOTENYOVA,L.LEHTIO,M.E.NILSSON,P.NORDLUND,T.NYMAN, JRNL AUTH 5 K.OLESEN,C.PERSSON,J.SAGEMARK,A.G.THORSELL,L.TRESAUGUES, JRNL AUTH 6 S.VAN DEN BERG,J.WEIGELT,M.WELIN,M.WIKSTROM,M.WISNIEWSKA, JRNL AUTH 7 H.SCHULER,STRUCTURAL GENOMICS CONSORTIUM (SGC) JRNL TITL HUMAN TYROSINE AMINOTRANSFERASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0035 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 42574 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2241 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3103 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2770 REMARK 3 BIN FREE R VALUE SET COUNT : 163 REMARK 3 BIN FREE R VALUE : 0.3030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6043 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 206 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.10000 REMARK 3 B22 (A**2) : -0.61000 REMARK 3 B33 (A**2) : 0.79000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.14000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.310 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.235 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.177 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.384 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.917 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.890 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6248 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4245 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8506 ; 1.155 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10403 ; 0.850 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 779 ; 7.280 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 259 ;32.602 ;24.208 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1050 ;14.770 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;18.147 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 955 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6878 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1194 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3900 ; 0.311 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1547 ; 0.058 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6337 ; 0.605 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2348 ; 0.975 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2168 ; 1.581 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 41 A 444 REMARK 3 ORIGIN FOR THE GROUP (A): 20.3021 89.9912 13.3510 REMARK 3 T TENSOR REMARK 3 T11: 0.1428 T22: 0.1036 REMARK 3 T33: 0.0804 T12: -0.0231 REMARK 3 T13: 0.0075 T23: -0.0294 REMARK 3 L TENSOR REMARK 3 L11: 2.4921 L22: 2.0892 REMARK 3 L33: 0.2880 L12: 1.6833 REMARK 3 L13: -0.3119 L23: -0.3125 REMARK 3 S TENSOR REMARK 3 S11: 0.2561 S12: -0.3748 S13: 0.2454 REMARK 3 S21: 0.4563 S22: -0.2384 S23: 0.2308 REMARK 3 S31: -0.0922 S32: -0.0192 S33: -0.0176 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 41 B 444 REMARK 3 ORIGIN FOR THE GROUP (A): 57.0474 80.4291 12.9704 REMARK 3 T TENSOR REMARK 3 T11: 0.0695 T22: 0.0654 REMARK 3 T33: 0.0102 T12: 0.0034 REMARK 3 T13: 0.0195 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 1.3163 L22: 1.1553 REMARK 3 L33: 0.4111 L12: 0.6036 REMARK 3 L13: 0.1906 L23: 0.0205 REMARK 3 S TENSOR REMARK 3 S11: 0.0857 S12: -0.1585 S13: -0.0214 REMARK 3 S21: 0.1919 S22: -0.0920 S23: 0.0548 REMARK 3 S31: 0.0611 S32: 0.0294 S33: 0.0063 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3DYD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000048643. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93300 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44821 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.11500 REMARK 200 R SYM (I) : 0.15700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.49200 REMARK 200 R SYM FOR SHELL (I) : 0.55000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1BW0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% MPD, 0.1M NA-ACETATE PH 4.6, 3MM REMARK 280 PLP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 77.21000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.79500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 77.21000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 45.79500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 18 REMARK 465 HIS A 19 REMARK 465 HIS A 20 REMARK 465 HIS A 21 REMARK 465 HIS A 22 REMARK 465 HIS A 23 REMARK 465 HIS A 24 REMARK 465 SER A 25 REMARK 465 SER A 26 REMARK 465 GLY A 27 REMARK 465 VAL A 28 REMARK 465 ASP A 29 REMARK 465 LEU A 30 REMARK 465 GLY A 31 REMARK 465 THR A 32 REMARK 465 GLU A 33 REMARK 465 ASN A 34 REMARK 465 LEU A 35 REMARK 465 TYR A 36 REMARK 465 PHE A 37 REMARK 465 GLN A 38 REMARK 465 SER A 39 REMARK 465 MET A 40 REMARK 465 MET A 48 REMARK 465 ALA A 49 REMARK 465 LYS A 50 REMARK 465 LYS A 51 REMARK 465 THR A 52 REMARK 465 PHE A 53 REMARK 465 ASN A 54 REMARK 465 PRO A 55 REMARK 465 ILE A 56 REMARK 465 ARG A 57 REMARK 465 ALA A 58 REMARK 465 ILE A 59 REMARK 465 VAL A 60 REMARK 465 ASP A 61 REMARK 465 ASN A 62 REMARK 465 MET A 63 REMARK 465 MET B 18 REMARK 465 HIS B 19 REMARK 465 HIS B 20 REMARK 465 HIS B 21 REMARK 465 HIS B 22 REMARK 465 HIS B 23 REMARK 465 HIS B 24 REMARK 465 SER B 25 REMARK 465 SER B 26 REMARK 465 GLY B 27 REMARK 465 VAL B 28 REMARK 465 ASP B 29 REMARK 465 LEU B 30 REMARK 465 GLY B 31 REMARK 465 THR B 32 REMARK 465 GLU B 33 REMARK 465 ASN B 34 REMARK 465 LEU B 35 REMARK 465 TYR B 36 REMARK 465 PHE B 37 REMARK 465 GLN B 38 REMARK 465 SER B 39 REMARK 465 MET B 40 REMARK 465 MET B 48 REMARK 465 ALA B 49 REMARK 465 LYS B 50 REMARK 465 LYS B 51 REMARK 465 THR B 52 REMARK 465 PHE B 53 REMARK 465 ASN B 54 REMARK 465 PRO B 55 REMARK 465 ILE B 56 REMARK 465 ARG B 57 REMARK 465 ALA B 58 REMARK 465 ILE B 59 REMARK 465 VAL B 60 REMARK 465 ASP B 61 REMARK 465 ASN B 62 REMARK 465 MET B 63 REMARK 465 LYS B 64 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CB ALA A 359 OE1 GLU A 424 2555 1.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 131 75.81 -150.54 REMARK 500 LYS A 192 54.39 -118.41 REMARK 500 LEU A 204 -25.68 73.55 REMARK 500 MET A 253 69.60 -110.09 REMARK 500 SER A 256 -159.84 -116.91 REMARK 500 THR A 268 -43.73 -139.21 REMARK 500 HIS A 295 77.03 -110.37 REMARK 500 ALA A 371 -150.87 59.61 REMARK 500 SER B 42 63.42 -161.61 REMARK 500 MET B 253 69.07 -108.06 REMARK 500 ASP B 257 47.55 -88.32 REMARK 500 HIS B 295 75.63 -112.22 REMARK 500 LEU B 317 9.14 87.04 REMARK 500 ALA B 371 -150.42 53.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP B 500 DBREF 3DYD A 41 444 UNP P17735 ATTY_HUMAN 41 444 DBREF 3DYD B 41 444 UNP P17735 ATTY_HUMAN 41 444 SEQADV 3DYD MET A 18 UNP P17735 EXPRESSION TAG SEQADV 3DYD HIS A 19 UNP P17735 EXPRESSION TAG SEQADV 3DYD HIS A 20 UNP P17735 EXPRESSION TAG SEQADV 3DYD HIS A 21 UNP P17735 EXPRESSION TAG SEQADV 3DYD HIS A 22 UNP P17735 EXPRESSION TAG SEQADV 3DYD HIS A 23 UNP P17735 EXPRESSION TAG SEQADV 3DYD HIS A 24 UNP P17735 EXPRESSION TAG SEQADV 3DYD SER A 25 UNP P17735 EXPRESSION TAG SEQADV 3DYD SER A 26 UNP P17735 EXPRESSION TAG SEQADV 3DYD GLY A 27 UNP P17735 EXPRESSION TAG SEQADV 3DYD VAL A 28 UNP P17735 EXPRESSION TAG SEQADV 3DYD ASP A 29 UNP P17735 EXPRESSION TAG SEQADV 3DYD LEU A 30 UNP P17735 EXPRESSION TAG SEQADV 3DYD GLY A 31 UNP P17735 EXPRESSION TAG SEQADV 3DYD THR A 32 UNP P17735 EXPRESSION TAG SEQADV 3DYD GLU A 33 UNP P17735 EXPRESSION TAG SEQADV 3DYD ASN A 34 UNP P17735 EXPRESSION TAG SEQADV 3DYD LEU A 35 UNP P17735 EXPRESSION TAG SEQADV 3DYD TYR A 36 UNP P17735 EXPRESSION TAG SEQADV 3DYD PHE A 37 UNP P17735 EXPRESSION TAG SEQADV 3DYD GLN A 38 UNP P17735 EXPRESSION TAG SEQADV 3DYD SER A 39 UNP P17735 EXPRESSION TAG SEQADV 3DYD MET A 40 UNP P17735 EXPRESSION TAG SEQADV 3DYD MET B 18 UNP P17735 EXPRESSION TAG SEQADV 3DYD HIS B 19 UNP P17735 EXPRESSION TAG SEQADV 3DYD HIS B 20 UNP P17735 EXPRESSION TAG SEQADV 3DYD HIS B 21 UNP P17735 EXPRESSION TAG SEQADV 3DYD HIS B 22 UNP P17735 EXPRESSION TAG SEQADV 3DYD HIS B 23 UNP P17735 EXPRESSION TAG SEQADV 3DYD HIS B 24 UNP P17735 EXPRESSION TAG SEQADV 3DYD SER B 25 UNP P17735 EXPRESSION TAG SEQADV 3DYD SER B 26 UNP P17735 EXPRESSION TAG SEQADV 3DYD GLY B 27 UNP P17735 EXPRESSION TAG SEQADV 3DYD VAL B 28 UNP P17735 EXPRESSION TAG SEQADV 3DYD ASP B 29 UNP P17735 EXPRESSION TAG SEQADV 3DYD LEU B 30 UNP P17735 EXPRESSION TAG SEQADV 3DYD GLY B 31 UNP P17735 EXPRESSION TAG SEQADV 3DYD THR B 32 UNP P17735 EXPRESSION TAG SEQADV 3DYD GLU B 33 UNP P17735 EXPRESSION TAG SEQADV 3DYD ASN B 34 UNP P17735 EXPRESSION TAG SEQADV 3DYD LEU B 35 UNP P17735 EXPRESSION TAG SEQADV 3DYD TYR B 36 UNP P17735 EXPRESSION TAG SEQADV 3DYD PHE B 37 UNP P17735 EXPRESSION TAG SEQADV 3DYD GLN B 38 UNP P17735 EXPRESSION TAG SEQADV 3DYD SER B 39 UNP P17735 EXPRESSION TAG SEQADV 3DYD MET B 40 UNP P17735 EXPRESSION TAG SEQRES 1 A 427 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 427 GLY THR GLU ASN LEU TYR PHE GLN SER MET TRP SER VAL SEQRES 3 A 427 ARG PRO SER ASP MET ALA LYS LYS THR PHE ASN PRO ILE SEQRES 4 A 427 ARG ALA ILE VAL ASP ASN MET LYS VAL LYS PRO ASN PRO SEQRES 5 A 427 ASN LYS THR MET ILE SER LEU SER ILE GLY ASP PRO THR SEQRES 6 A 427 VAL PHE GLY ASN LEU PRO THR ASP PRO GLU VAL THR GLN SEQRES 7 A 427 ALA MET LYS ASP ALA LEU ASP SER GLY LYS TYR ASN GLY SEQRES 8 A 427 TYR ALA PRO SER ILE GLY PHE LEU SER SER ARG GLU GLU SEQRES 9 A 427 ILE ALA SER TYR TYR HIS CYS PRO GLU ALA PRO LEU GLU SEQRES 10 A 427 ALA LYS ASP VAL ILE LEU THR SER GLY CYS SER GLN ALA SEQRES 11 A 427 ILE ASP LEU CYS LEU ALA VAL LEU ALA ASN PRO GLY GLN SEQRES 12 A 427 ASN ILE LEU VAL PRO ARG PRO GLY PHE SER LEU TYR LYS SEQRES 13 A 427 THR LEU ALA GLU SER MET GLY ILE GLU VAL LYS LEU TYR SEQRES 14 A 427 ASN LEU LEU PRO GLU LYS SER TRP GLU ILE ASP LEU LYS SEQRES 15 A 427 GLN LEU GLU TYR LEU ILE ASP GLU LYS THR ALA CYS LEU SEQRES 16 A 427 ILE VAL ASN ASN PRO SER ASN PRO CYS GLY SER VAL PHE SEQRES 17 A 427 SER LYS ARG HIS LEU GLN LYS ILE LEU ALA VAL ALA ALA SEQRES 18 A 427 ARG GLN CYS VAL PRO ILE LEU ALA ASP GLU ILE TYR GLY SEQRES 19 A 427 ASP MET VAL PHE SER ASP CYS LYS TYR GLU PRO LEU ALA SEQRES 20 A 427 THR LEU SER THR ASP VAL PRO ILE LEU SER CYS GLY GLY SEQRES 21 A 427 LEU ALA LYS ARG TRP LEU VAL PRO GLY TRP ARG LEU GLY SEQRES 22 A 427 TRP ILE LEU ILE HIS ASP ARG ARG ASP ILE PHE GLY ASN SEQRES 23 A 427 GLU ILE ARG ASP GLY LEU VAL LYS LEU SER GLN ARG ILE SEQRES 24 A 427 LEU GLY PRO CYS THR ILE VAL GLN GLY ALA LEU LYS SER SEQRES 25 A 427 ILE LEU CYS ARG THR PRO GLY GLU PHE TYR HIS ASN THR SEQRES 26 A 427 LEU SER PHE LEU LYS SER ASN ALA ASP LEU CYS TYR GLY SEQRES 27 A 427 ALA LEU ALA ALA ILE PRO GLY LEU ARG PRO VAL ARG PRO SEQRES 28 A 427 SER GLY ALA MET TYR LEU MET VAL GLY ILE GLU MET GLU SEQRES 29 A 427 HIS PHE PRO GLU PHE GLU ASN ASP VAL GLU PHE THR GLU SEQRES 30 A 427 ARG LEU VAL ALA GLU GLN SER VAL HIS CYS LEU PRO ALA SEQRES 31 A 427 THR CYS PHE GLU TYR PRO ASN PHE ILE ARG VAL VAL ILE SEQRES 32 A 427 THR VAL PRO GLU VAL MET MET LEU GLU ALA CYS SER ARG SEQRES 33 A 427 ILE GLN GLU PHE CYS GLU GLN HIS TYR HIS CYS SEQRES 1 B 427 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 427 GLY THR GLU ASN LEU TYR PHE GLN SER MET TRP SER VAL SEQRES 3 B 427 ARG PRO SER ASP MET ALA LYS LYS THR PHE ASN PRO ILE SEQRES 4 B 427 ARG ALA ILE VAL ASP ASN MET LYS VAL LYS PRO ASN PRO SEQRES 5 B 427 ASN LYS THR MET ILE SER LEU SER ILE GLY ASP PRO THR SEQRES 6 B 427 VAL PHE GLY ASN LEU PRO THR ASP PRO GLU VAL THR GLN SEQRES 7 B 427 ALA MET LYS ASP ALA LEU ASP SER GLY LYS TYR ASN GLY SEQRES 8 B 427 TYR ALA PRO SER ILE GLY PHE LEU SER SER ARG GLU GLU SEQRES 9 B 427 ILE ALA SER TYR TYR HIS CYS PRO GLU ALA PRO LEU GLU SEQRES 10 B 427 ALA LYS ASP VAL ILE LEU THR SER GLY CYS SER GLN ALA SEQRES 11 B 427 ILE ASP LEU CYS LEU ALA VAL LEU ALA ASN PRO GLY GLN SEQRES 12 B 427 ASN ILE LEU VAL PRO ARG PRO GLY PHE SER LEU TYR LYS SEQRES 13 B 427 THR LEU ALA GLU SER MET GLY ILE GLU VAL LYS LEU TYR SEQRES 14 B 427 ASN LEU LEU PRO GLU LYS SER TRP GLU ILE ASP LEU LYS SEQRES 15 B 427 GLN LEU GLU TYR LEU ILE ASP GLU LYS THR ALA CYS LEU SEQRES 16 B 427 ILE VAL ASN ASN PRO SER ASN PRO CYS GLY SER VAL PHE SEQRES 17 B 427 SER LYS ARG HIS LEU GLN LYS ILE LEU ALA VAL ALA ALA SEQRES 18 B 427 ARG GLN CYS VAL PRO ILE LEU ALA ASP GLU ILE TYR GLY SEQRES 19 B 427 ASP MET VAL PHE SER ASP CYS LYS TYR GLU PRO LEU ALA SEQRES 20 B 427 THR LEU SER THR ASP VAL PRO ILE LEU SER CYS GLY GLY SEQRES 21 B 427 LEU ALA LYS ARG TRP LEU VAL PRO GLY TRP ARG LEU GLY SEQRES 22 B 427 TRP ILE LEU ILE HIS ASP ARG ARG ASP ILE PHE GLY ASN SEQRES 23 B 427 GLU ILE ARG ASP GLY LEU VAL LYS LEU SER GLN ARG ILE SEQRES 24 B 427 LEU GLY PRO CYS THR ILE VAL GLN GLY ALA LEU LYS SER SEQRES 25 B 427 ILE LEU CYS ARG THR PRO GLY GLU PHE TYR HIS ASN THR SEQRES 26 B 427 LEU SER PHE LEU LYS SER ASN ALA ASP LEU CYS TYR GLY SEQRES 27 B 427 ALA LEU ALA ALA ILE PRO GLY LEU ARG PRO VAL ARG PRO SEQRES 28 B 427 SER GLY ALA MET TYR LEU MET VAL GLY ILE GLU MET GLU SEQRES 29 B 427 HIS PHE PRO GLU PHE GLU ASN ASP VAL GLU PHE THR GLU SEQRES 30 B 427 ARG LEU VAL ALA GLU GLN SER VAL HIS CYS LEU PRO ALA SEQRES 31 B 427 THR CYS PHE GLU TYR PRO ASN PHE ILE ARG VAL VAL ILE SEQRES 32 B 427 THR VAL PRO GLU VAL MET MET LEU GLU ALA CYS SER ARG SEQRES 33 B 427 ILE GLN GLU PHE CYS GLU GLN HIS TYR HIS CYS HET PLP A 500 15 HET PLP B 500 15 HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETSYN PLP VITAMIN B6 PHOSPHATE FORMUL 3 PLP 2(C8 H10 N O6 P) FORMUL 5 HOH *206(H2 O) HELIX 1 1 ASP A 90 GLY A 104 1 15 HELIX 2 2 PHE A 115 HIS A 127 1 13 HELIX 3 3 GLU A 134 LYS A 136 5 3 HELIX 4 4 GLY A 143 ALA A 156 1 14 HELIX 5 5 SER A 170 MET A 179 1 10 HELIX 6 6 LEU A 189 SER A 193 5 5 HELIX 7 7 ASP A 197 TYR A 203 1 7 HELIX 8 8 SER A 226 GLN A 240 1 15 HELIX 9 9 PRO A 262 SER A 267 5 6 HELIX 10 10 VAL A 284 ARG A 288 5 5 HELIX 11 11 PHE A 301 LEU A 317 1 17 HELIX 12 12 CYS A 320 THR A 334 1 15 HELIX 13 13 PRO A 335 ILE A 360 1 26 HELIX 14 14 MET A 380 PHE A 383 5 4 HELIX 15 15 ASN A 388 SER A 401 1 14 HELIX 16 16 THR A 408 GLU A 411 5 4 HELIX 17 17 PRO A 423 TYR A 442 1 20 HELIX 18 18 ASP B 90 GLY B 104 1 15 HELIX 19 19 PHE B 115 HIS B 127 1 13 HELIX 20 20 GLU B 134 LYS B 136 5 3 HELIX 21 21 SER B 142 ALA B 156 1 15 HELIX 22 22 SER B 170 MET B 179 1 10 HELIX 23 23 LEU B 189 SER B 193 5 5 HELIX 24 24 ASP B 197 ILE B 205 1 9 HELIX 25 25 SER B 226 CYS B 241 1 16 HELIX 26 26 PRO B 262 SER B 267 5 6 HELIX 27 27 VAL B 284 ARG B 288 5 5 HELIX 28 28 PHE B 301 GLN B 314 1 14 HELIX 29 29 CYS B 320 THR B 334 1 15 HELIX 30 30 PRO B 335 ALA B 359 1 25 HELIX 31 31 MET B 380 PHE B 383 5 4 HELIX 32 32 ASN B 388 SER B 401 1 14 HELIX 33 33 THR B 408 GLU B 411 5 4 HELIX 34 34 PRO B 423 TYR B 442 1 20 SHEET 1 A 2 ILE A 74 SER A 75 0 SHEET 2 A 2 VAL A 402 HIS A 403 1 O HIS A 403 N ILE A 74 SHEET 1 B 7 VAL A 138 THR A 141 0 SHEET 2 B 7 GLY A 290 HIS A 295 -1 O GLY A 290 N THR A 141 SHEET 3 B 7 ILE A 272 GLY A 277 -1 N ILE A 272 O HIS A 295 SHEET 4 B 7 ILE A 244 ASP A 247 1 N ALA A 246 O CYS A 275 SHEET 5 B 7 THR A 209 ASN A 215 1 N VAL A 214 O ASP A 247 SHEET 6 B 7 ASN A 161 ARG A 166 1 N LEU A 163 O ILE A 213 SHEET 7 B 7 GLU A 182 ASN A 187 1 O LYS A 184 N VAL A 164 SHEET 1 C 4 LEU A 363 VAL A 366 0 SHEET 2 C 4 TYR A 373 ILE A 378 -1 O GLY A 377 N ARG A 364 SHEET 3 C 4 PHE A 415 VAL A 419 -1 O ILE A 416 N VAL A 376 SHEET 4 C 4 LEU A 405 PRO A 406 -1 N LEU A 405 O ARG A 417 SHEET 1 D 2 ILE B 74 SER B 75 0 SHEET 2 D 2 VAL B 402 HIS B 403 1 O HIS B 403 N ILE B 74 SHEET 1 E 7 VAL B 138 THR B 141 0 SHEET 2 E 7 GLY B 290 HIS B 295 -1 O GLY B 290 N THR B 141 SHEET 3 E 7 ILE B 272 GLY B 277 -1 N SER B 274 O LEU B 293 SHEET 4 E 7 ILE B 244 ASP B 247 1 N ALA B 246 O CYS B 275 SHEET 5 E 7 THR B 209 ASN B 215 1 N LEU B 212 O LEU B 245 SHEET 6 E 7 ASN B 161 ARG B 166 1 N LEU B 163 O ILE B 213 SHEET 7 E 7 GLU B 182 ASN B 187 1 O LYS B 184 N ILE B 162 SHEET 1 F 4 LEU B 363 PRO B 365 0 SHEET 2 F 4 TYR B 373 ILE B 378 -1 O GLY B 377 N ARG B 364 SHEET 3 F 4 PHE B 415 VAL B 419 -1 O ILE B 416 N VAL B 376 SHEET 4 F 4 LEU B 405 PRO B 406 -1 N LEU B 405 O ARG B 417 LINK NZ LYS A 280 C4A PLP A 500 1555 1555 1.68 LINK NZ LYS B 280 C4A PLP B 500 1555 1555 1.63 CISPEP 1 ARG A 166 PRO A 167 0 -2.06 CISPEP 2 ASN A 216 PRO A 217 0 -2.90 CISPEP 3 ASN A 219 PRO A 220 0 15.42 CISPEP 4 ARG B 166 PRO B 167 0 0.18 CISPEP 5 ASN B 216 PRO B 217 0 -7.64 CISPEP 6 ASN B 219 PRO B 220 0 13.05 SITE 1 AC1 14 GLY A 143 CYS A 144 SER A 145 ASN A 215 SITE 2 AC1 14 ASN A 219 ASP A 247 ILE A 249 TYR A 250 SITE 3 AC1 14 ALA A 279 LYS A 280 ARG A 288 HOH A 535 SITE 4 AC1 14 HOH A 548 TYR B 109 SITE 1 AC2 15 TYR A 109 GLY B 143 CYS B 144 SER B 145 SITE 2 AC2 15 PHE B 169 ASN B 215 ASN B 219 ASP B 247 SITE 3 AC2 15 ILE B 249 TYR B 250 ALA B 279 LYS B 280 SITE 4 AC2 15 ARG B 288 HOH B 552 HOH B 555 CRYST1 154.420 91.590 75.570 90.00 106.18 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006476 0.000000 0.001879 0.00000 SCALE2 0.000000 0.010918 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013779 0.00000