PDB Short entry for 3E92 HEADER TRANSFERASE 21-AUG-08 3E92 TITLE CRYSTAL STRUCTURE OF P38 KINASE IN COMPLEX WITH A BIARYL AMIDE TITLE 2 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE 14; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MITOGEN-ACTIVATED PROTEIN KINASE P38 ALPHA, MAP KINASE P38 COMPND 5 ALPHA, CYTOKINE SUPPRESSIVE ANTI-INFLAMMATORY DRUG-BINDING PROTEIN, COMPND 6 CSAID-BINDING PROTEIN, CSBP, MAX-INTERACTING PROTEIN 2, MAP KINASE COMPND 7 MXI2, SAPK2A; COMPND 8 EC: 2.7.11.24; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BRL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PRSETA KEYWDS P38, SERINE/THREONINE PROTEIN KINASE, MAP KINASE, ATP-BINDING, KEYWDS 2 KINASE, NUCLEOTIDE-BINDING, NUCLEUS, PHOSPHOPROTEIN, KEYWDS 3 SERINE/THREONINE-PROTEIN KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.O.SOMERS,S.PATEL REVDAT 6 15-NOV-23 3E92 1 REMARK REVDAT 5 01-NOV-23 3E92 1 REMARK SEQADV LINK REVDAT 4 25-OCT-17 3E92 1 REMARK REVDAT 3 13-JUL-11 3E92 1 VERSN REVDAT 2 24-FEB-09 3E92 1 VERSN REVDAT 1 30-SEP-08 3E92 0 JRNL AUTH I.BALDWIN,P.BAMBOROUGH,C.G.HASLAM,S.S.HUNJAN,T.LONGSTAFF, JRNL AUTH 2 C.J.MOONEY,S.PATEL,J.QUINN,D.O.SOMERS JRNL TITL KINASE ARRAY DESIGN, BACK TO FRONT: BIARYL AMIDES JRNL REF BIOORG.MED.CHEM.LETT. V. 18 5285 2008 JRNL REFN ISSN 0960-894X JRNL PMID 18789685 JRNL DOI 10.1016/J.BMCL.2008.08.051 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 29392 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1497 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1528 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3140 REMARK 3 BIN FREE R VALUE SET COUNT : 96 REMARK 3 BIN FREE R VALUE : 0.3890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2816 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 346 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 34.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.67000 REMARK 3 B22 (A**2) : -1.93000 REMARK 3 B33 (A**2) : 1.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.162 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.150 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.107 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.180 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2930 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3973 ; 1.547 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 349 ;11.796 ; 5.057 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 137 ;35.933 ;24.088 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 500 ;12.810 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;19.139 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 440 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2204 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1362 ; 0.210 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1993 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 284 ; 0.160 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 39 ; 0.184 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.165 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1800 ; 1.330 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2830 ; 2.219 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1297 ; 3.198 ; 4.500 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1140 ; 4.605 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 109 REMARK 3 RESIDUE RANGE : A 318 A 352 REMARK 3 ORIGIN FOR THE GROUP (A): 31.9562 30.0139 28.4726 REMARK 3 T TENSOR REMARK 3 T11: -0.2432 T22: -0.1151 REMARK 3 T33: -0.0808 T12: 0.0261 REMARK 3 T13: 0.0201 T23: 0.0347 REMARK 3 L TENSOR REMARK 3 L11: 1.9925 L22: 4.0313 REMARK 3 L33: 3.3074 L12: 1.9332 REMARK 3 L13: -0.2002 L23: -1.7593 REMARK 3 S TENSOR REMARK 3 S11: -0.2022 S12: 0.1093 S13: -0.1712 REMARK 3 S21: -0.4648 S22: 0.0408 S23: -0.0924 REMARK 3 S31: 0.1861 S32: -0.0254 S33: 0.1614 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 110 A 317 REMARK 3 ORIGIN FOR THE GROUP (A): 52.1457 22.6744 48.7217 REMARK 3 T TENSOR REMARK 3 T11: -0.1828 T22: -0.1562 REMARK 3 T33: -0.3043 T12: -0.0216 REMARK 3 T13: 0.0040 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 2.6361 L22: 4.4231 REMARK 3 L33: 1.3613 L12: -2.1006 REMARK 3 L13: 0.0548 L23: 0.2768 REMARK 3 S TENSOR REMARK 3 S11: -0.1150 S12: 0.0561 S13: -0.0529 REMARK 3 S21: 0.2713 S22: 0.1281 S23: 0.0466 REMARK 3 S31: -0.0163 S32: 0.0123 S33: -0.0131 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3E92 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000049028. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JAN-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH2R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29459 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.55400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC 5.1.05 REMARK 200 STARTING MODEL: PDB ENTRY 1WFC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18-22% PEG 5000MME, 0.18M AMMONIUM REMARK 280 SULPHATE, 3-4% JEFFAMINE, 0.1M ADA, PH 6.5, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.75800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.09550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.11200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.09550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.75800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.11200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -10 REMARK 465 LYS A -9 REMARK 465 LYS A -8 REMARK 465 GLY A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 LEU A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ARG A 173 REMARK 465 LEU A 353 REMARK 465 ASP A 354 REMARK 465 GLN A 355 REMARK 465 GLU A 356 REMARK 465 GLU A 357 REMARK 465 MET A 358 REMARK 465 GLU A 359 REMARK 465 SER A 360 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 633 O HOH A 634 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 186 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 14 73.01 58.05 REMARK 500 LYS A 15 8.74 56.18 REMARK 500 ARG A 57 68.22 33.40 REMARK 500 ARG A 149 -15.84 76.48 REMARK 500 ASP A 150 38.64 -140.90 REMARK 500 PHE A 274 62.16 -110.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE G6A A 361 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 362 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 363 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 364 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 365 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3E93 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH ANOTHER BIARYL-AMIDE INHIBITOR DBREF 3E92 A 1 360 UNP Q16539 MK14_HUMAN 1 360 SEQADV 3E92 MET A -10 UNP Q16539 INITIATING METHIONINE SEQADV 3E92 LYS A -9 UNP Q16539 EXPRESSION TAG SEQADV 3E92 LYS A -8 UNP Q16539 EXPRESSION TAG SEQADV 3E92 GLY A -7 UNP Q16539 EXPRESSION TAG SEQADV 3E92 HIS A -6 UNP Q16539 EXPRESSION TAG SEQADV 3E92 HIS A -5 UNP Q16539 EXPRESSION TAG SEQADV 3E92 LEU A -4 UNP Q16539 EXPRESSION TAG SEQADV 3E92 HIS A -3 UNP Q16539 EXPRESSION TAG SEQADV 3E92 HIS A -2 UNP Q16539 EXPRESSION TAG SEQADV 3E92 HIS A -1 UNP Q16539 EXPRESSION TAG SEQADV 3E92 GLY A 0 UNP Q16539 EXPRESSION TAG SEQRES 1 A 371 MET LYS LYS GLY HIS HIS LEU HIS HIS HIS GLY MET SER SEQRES 2 A 371 GLN GLU ARG PRO THR PHE TYR ARG GLN GLU LEU ASN LYS SEQRES 3 A 371 THR ILE TRP GLU VAL PRO GLU ARG TYR GLN ASN LEU SER SEQRES 4 A 371 PRO VAL GLY SER GLY ALA TYR GLY SER VAL CYS ALA ALA SEQRES 5 A 371 PHE ASP THR LYS THR GLY LEU ARG VAL ALA VAL LYS LYS SEQRES 6 A 371 LEU SER ARG PRO PHE GLN SER ILE ILE HIS ALA LYS ARG SEQRES 7 A 371 THR TYR ARG GLU LEU ARG LEU LEU LYS HIS MET LYS HIS SEQRES 8 A 371 GLU ASN VAL ILE GLY LEU LEU ASP VAL PHE THR PRO ALA SEQRES 9 A 371 ARG SER LEU GLU GLU PHE ASN ASP VAL TYR LEU VAL THR SEQRES 10 A 371 HIS LEU MET GLY ALA ASP LEU ASN ASN ILE VAL LYS CYS SEQRES 11 A 371 GLN LYS LEU THR ASP ASP HIS VAL GLN PHE LEU ILE TYR SEQRES 12 A 371 GLN ILE LEU ARG GLY LEU LYS TYR ILE HIS SER ALA ASP SEQRES 13 A 371 ILE ILE HIS ARG ASP LEU LYS PRO SER ASN LEU ALA VAL SEQRES 14 A 371 ASN GLU ASP CSO GLU LEU LYS ILE LEU ASP PHE GLY LEU SEQRES 15 A 371 ALA ARG HIS THR ASP ASP GLU MET THR GLY TYR VAL ALA SEQRES 16 A 371 THR ARG TRP TYR ARG ALA PRO GLU ILE MET LEU ASN TRP SEQRES 17 A 371 MET HIS TYR ASN GLN THR VAL ASP ILE TRP SER VAL GLY SEQRES 18 A 371 CYS ILE MET ALA GLU LEU LEU THR GLY ARG THR LEU PHE SEQRES 19 A 371 PRO GLY THR ASP HIS ILE ASP GLN LEU LYS LEU ILE LEU SEQRES 20 A 371 ARG LEU VAL GLY THR PRO GLY ALA GLU LEU LEU LYS LYS SEQRES 21 A 371 ILE SER SER GLU SER ALA ARG ASN TYR ILE GLN SER LEU SEQRES 22 A 371 THR GLN MET PRO LYS MET ASN PHE ALA ASN VAL PHE ILE SEQRES 23 A 371 GLY ALA ASN PRO LEU ALA VAL ASP LEU LEU GLU LYS MET SEQRES 24 A 371 LEU VAL LEU ASP SER ASP LYS ARG ILE THR ALA ALA GLN SEQRES 25 A 371 ALA LEU ALA HIS ALA TYR PHE ALA GLN TYR HIS ASP PRO SEQRES 26 A 371 ASP ASP GLU PRO VAL ALA ASP PRO TYR ASP GLN SER PHE SEQRES 27 A 371 GLU SER ARG ASP LEU LEU ILE ASP GLU TRP LYS SER LEU SEQRES 28 A 371 THR TYR ASP GLU VAL ILE SER PHE VAL PRO PRO PRO LEU SEQRES 29 A 371 ASP GLN GLU GLU MET GLU SER MODRES 3E92 CSO A 162 CYS S-HYDROXYCYSTEINE HET CSO A 162 7 HET G6A A 361 26 HET GOL A 362 6 HET GOL A 363 6 HET GOL A 364 6 HET GOL A 365 6 HETNAM CSO S-HYDROXYCYSTEINE HETNAM G6A N-CYCLOPROPYL-2',6-DIMETHYL-4'-(5-METHYL-1,3,4- HETNAM 2 G6A OXADIAZOL-2-YL)BIPHENYL-3-CARBOXAMIDE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CSO C3 H7 N O3 S FORMUL 2 G6A C21 H21 N3 O2 FORMUL 3 GOL 4(C3 H8 O3) FORMUL 7 HOH *346(H2 O) HELIX 1 1 SER A 61 MET A 78 1 18 HELIX 2 2 LEU A 113 GLN A 120 1 8 HELIX 3 3 THR A 123 ALA A 144 1 22 HELIX 4 4 LYS A 152 SER A 154 5 3 HELIX 5 5 ASP A 176 THR A 180 5 5 HELIX 6 6 VAL A 183 TYR A 188 1 6 HELIX 7 7 ALA A 190 LEU A 195 1 6 HELIX 8 8 GLN A 202 GLY A 219 1 18 HELIX 9 9 ASP A 227 GLY A 240 1 14 HELIX 10 10 GLY A 243 LYS A 248 1 6 HELIX 11 11 SER A 252 GLN A 260 1 9 HELIX 12 12 ASN A 269 PHE A 274 1 6 HELIX 13 13 ASN A 278 LEU A 289 1 12 HELIX 14 14 ASP A 292 ARG A 296 5 5 HELIX 15 15 THR A 298 ALA A 304 1 7 HELIX 16 16 HIS A 305 ALA A 309 5 5 HELIX 17 17 ASP A 313 GLU A 317 5 5 HELIX 18 18 GLN A 325 ARG A 330 5 6 HELIX 19 19 LEU A 333 SER A 347 1 15 SHEET 1 A 2 PHE A 8 GLU A 12 0 SHEET 2 A 2 ILE A 17 PRO A 21 -1 O TRP A 18 N GLN A 11 SHEET 1 B 5 TYR A 24 PRO A 29 0 SHEET 2 B 5 VAL A 38 ASP A 43 -1 O PHE A 42 N GLN A 25 SHEET 3 B 5 ARG A 49 LYS A 54 -1 O VAL A 52 N CYS A 39 SHEET 4 B 5 TYR A 103 HIS A 107 -1 O THR A 106 N ALA A 51 SHEET 5 B 5 ASP A 88 PHE A 90 -1 N ASP A 88 O VAL A 105 SHEET 1 C 3 ALA A 111 ASP A 112 0 SHEET 2 C 3 LEU A 156 VAL A 158 -1 O VAL A 158 N ALA A 111 SHEET 3 C 3 LEU A 164 ILE A 166 -1 O LYS A 165 N ALA A 157 LINK C ASP A 161 N CSO A 162 1555 1555 1.34 LINK C CSO A 162 N GLU A 163 1555 1555 1.33 SITE 1 AC1 14 TYR A 35 ALA A 51 GLU A 71 LEU A 75 SITE 2 AC1 14 ILE A 84 THR A 106 HIS A 107 MET A 109 SITE 3 AC1 14 GLY A 110 ALA A 111 LEU A 167 ASP A 168 SITE 4 AC1 14 PHE A 169 LEU A 171 SITE 1 AC2 3 ASP A 125 PHE A 129 TYR A 311 SITE 1 AC3 9 TYR A 69 ARG A 220 THR A 221 SER A 326 SITE 2 AC3 9 ARG A 330 HOH A 367 HOH A 393 HOH A 449 SITE 3 AC3 9 HOH A 459 SITE 1 AC4 5 VAL A 117 GLY A 219 ASP A 343 GLU A 344 SITE 2 AC4 5 SER A 347 SITE 1 AC5 5 VAL A 117 LEU A 122 LEU A 216 LEU A 217 SITE 2 AC5 5 GLY A 219 CRYST1 45.516 86.224 124.191 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021970 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011598 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008052 0.00000