PDB Short entry for 3E9B HEADER HYDROLASE 21-AUG-08 3E9B TITLE X-RAY STRUCTURE OF RAT ARGINASE I-T135A MUTANT: THE COMPLEX WITH BEC COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARGINASE-1; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: TYPE I ARGINASE, LIVER-TYPE ARGINASE; COMPND 5 EC: 3.5.3.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: BROWN RAT, RAT, RATS; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: ARG1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AMINO ACID RECOGNITION, ARGINASE MUTANT, T135A, BEC, ARGININE KEYWDS 2 METABOLISM, HYDROLASE, MANGANESE, METAL-BINDING, PHOSPHOPROTEIN, KEYWDS 3 UREA CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR E.Y.SHISHOVA,L.DI COSTANZO,D.W.CHRISTIANSON REVDAT 5 30-AUG-23 3E9B 1 REMARK REVDAT 4 20-OCT-21 3E9B 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 3E9B 1 VERSN REVDAT 2 01-DEC-09 3E9B 1 JRNL REVDAT 1 02-DEC-08 3E9B 0 JRNL AUTH E.Y.SHISHOVA,L.DI COSTANZO,F.A.EMIG,D.E.ASH,D.W.CHRISTIANSON JRNL TITL PROBING THE SPECIFICITY DETERMINANTS OF AMINO ACID JRNL TITL 2 RECOGNITION BY ARGINASE. JRNL REF BIOCHEMISTRY V. 48 121 2009 JRNL REFN ISSN 0006-2960 JRNL PMID 19093830 JRNL DOI 10.1021/BI801911V REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 71054.080 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 44988 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4521 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.28 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5968 REMARK 3 BIN R VALUE (WORKING SET) : 0.2910 REMARK 3 BIN FREE R VALUE : 0.3200 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 681 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.012 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7026 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 339 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.67000 REMARK 3 B22 (A**2) : -4.67000 REMARK 3 B33 (A**2) : 9.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM SIGMAA (A) : 0.28 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.34 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.30 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.910 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.240 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.920 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.840 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.510 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 53.83 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 5 : S2C.PAR REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : S2C.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3E9B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1000049037. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46355 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.35600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1RLA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: DROPS CONTAINING 3 MICROL OF PROTEIN REMARK 280 SOLUTION [5 MG/ML PROTEIN, 50 MM BICINE (PH 8.5), 2 MM BEC, 2 MM REMARK 280 MNCL2] AND 3 MICROL OF PRECIPITANT SOLUTION [0.1 M CHES (PH 9.5), REMARK 280 20% PEG 8000] WERE EQUILIBRATED OVER A 1 ML RESERVOIR OF REMARK 280 PRECIPITANT SOLUTION. , VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.13067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.56533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 LYS A 4 REMARK 465 PRO A 5 REMARK 465 PRO A 314 REMARK 465 GLU A 315 REMARK 465 THR A 316 REMARK 465 ASP A 317 REMARK 465 TYR A 318 REMARK 465 LEU A 319 REMARK 465 LYS A 320 REMARK 465 PRO A 321 REMARK 465 PRO A 322 REMARK 465 LYS A 323 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 SER B 3 REMARK 465 LYS B 4 REMARK 465 PRO B 5 REMARK 465 PRO B 314 REMARK 465 GLU B 315 REMARK 465 THR B 316 REMARK 465 ASP B 317 REMARK 465 TYR B 318 REMARK 465 LEU B 319 REMARK 465 LYS B 320 REMARK 465 PRO B 321 REMARK 465 PRO B 322 REMARK 465 LYS B 323 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 SER C 3 REMARK 465 LYS C 4 REMARK 465 PRO C 5 REMARK 465 PRO C 314 REMARK 465 GLU C 315 REMARK 465 THR C 316 REMARK 465 ASP C 317 REMARK 465 TYR C 318 REMARK 465 LEU C 319 REMARK 465 LYS C 320 REMARK 465 PRO C 321 REMARK 465 PRO C 322 REMARK 465 LYS C 323 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 21 172.60 -45.50 REMARK 500 PRO A 59 -96.91 -27.78 REMARK 500 GLN A 65 -121.74 69.06 REMARK 500 HIS A 115 73.08 -117.77 REMARK 500 PRO A 167 104.99 -38.13 REMARK 500 ARG A 180 -0.48 -167.77 REMARK 500 PRO B 14 71.90 -69.13 REMARK 500 SER B 16 -1.13 -147.65 REMARK 500 LYS B 17 3.67 -65.75 REMARK 500 PRO B 59 -85.40 -65.30 REMARK 500 ASN B 60 43.15 -76.17 REMARK 500 PRO B 63 147.08 -38.34 REMARK 500 PHE B 64 78.56 -111.84 REMARK 500 GLN B 65 -52.88 79.85 REMARK 500 ILE B 66 -30.26 -155.23 REMARK 500 HIS B 101 4.85 -68.94 REMARK 500 SER B 136 -25.49 -146.88 REMARK 500 ARG B 180 -2.01 -160.25 REMARK 500 PRO B 238 -17.30 -48.87 REMARK 500 SER B 271 -31.67 -132.26 REMARK 500 PRO B 280 2.51 -67.14 REMARK 500 PRO C 59 -101.00 -50.23 REMARK 500 ASN C 60 78.36 -68.86 REMARK 500 GLN C 65 -91.37 63.65 REMARK 500 ASN C 90 3.05 -69.62 REMARK 500 PRO C 132 -14.93 -49.79 REMARK 500 PRO C 167 101.47 -54.83 REMARK 500 ARG C 180 -8.42 -152.30 REMARK 500 SER C 199 -177.46 -68.89 REMARK 500 LYS C 223 155.70 178.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 500 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 124 OD2 REMARK 620 2 ASP A 128 OD2 88.7 REMARK 620 3 ASP A 232 OD2 91.2 175.1 REMARK 620 4 S2C A 502 O1 95.3 90.0 85.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 124 OD1 REMARK 620 2 ASP A 234 OD2 128.1 REMARK 620 3 S2C A 502 O1 97.9 132.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 500 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 124 OD2 REMARK 620 2 ASP B 128 OD2 83.0 REMARK 620 3 ASP B 232 OD2 86.3 167.7 REMARK 620 4 S2C B 502 O1 94.8 85.9 89.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 124 OD1 REMARK 620 2 ASP B 232 OD2 93.0 REMARK 620 3 ASP B 234 OD2 126.0 83.7 REMARK 620 4 S2C B 502 O1 96.1 84.8 136.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 500 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 124 OD2 REMARK 620 2 ASP C 128 OD2 94.8 REMARK 620 3 ASP C 232 OD2 84.2 167.5 REMARK 620 4 S2C C 502 O1 94.3 86.6 81.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 124 OD1 REMARK 620 2 ASP C 232 OD2 93.1 REMARK 620 3 ASP C 234 OD1 82.4 88.8 REMARK 620 4 ASP C 234 OD2 139.2 90.0 57.0 REMARK 620 5 S2C C 502 O1 89.9 79.9 165.9 130.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN C 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE S2C B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE S2C A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE S2C C 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2E8Q RELATED DB: PDB REMARK 900 THE SAME MUTANT AND UNLIGANDED STRUCTURE REMARK 900 RELATED ID: 3E8Z RELATED DB: PDB DBREF 3E9B A 1 323 UNP P07824 ARGI1_RAT 1 323 DBREF 3E9B B 1 323 UNP P07824 ARGI1_RAT 1 323 DBREF 3E9B C 1 323 UNP P07824 ARGI1_RAT 1 323 SEQADV 3E9B ALA A 135 UNP P07824 THR 135 ENGINEERED MUTATION SEQADV 3E9B ALA B 135 UNP P07824 THR 135 ENGINEERED MUTATION SEQADV 3E9B ALA C 135 UNP P07824 THR 135 ENGINEERED MUTATION SEQRES 1 A 323 MET SER SER LYS PRO LYS PRO ILE GLU ILE ILE GLY ALA SEQRES 2 A 323 PRO PHE SER LYS GLY GLN PRO ARG GLY GLY VAL GLU LYS SEQRES 3 A 323 GLY PRO ALA ALA LEU ARG LYS ALA GLY LEU VAL GLU LYS SEQRES 4 A 323 LEU LYS GLU THR GLU TYR ASN VAL ARG ASP HIS GLY ASP SEQRES 5 A 323 LEU ALA PHE VAL ASP VAL PRO ASN ASP SER PRO PHE GLN SEQRES 6 A 323 ILE VAL LYS ASN PRO ARG SER VAL GLY LYS ALA ASN GLU SEQRES 7 A 323 GLN LEU ALA ALA VAL VAL ALA GLU THR GLN LYS ASN GLY SEQRES 8 A 323 THR ILE SER VAL VAL LEU GLY GLY ASP HIS SER MET ALA SEQRES 9 A 323 ILE GLY SER ILE SER GLY HIS ALA ARG VAL HIS PRO ASP SEQRES 10 A 323 LEU CYS VAL ILE TRP VAL ASP ALA HIS THR ASP ILE ASN SEQRES 11 A 323 THR PRO LEU THR ALA SER SER GLY ASN LEU HIS GLY GLN SEQRES 12 A 323 PRO VAL ALA PHE LEU LEU LYS GLU LEU LYS GLY LYS PHE SEQRES 13 A 323 PRO ASP VAL PRO GLY PHE SER TRP VAL THR PRO CYS ILE SEQRES 14 A 323 SER ALA LYS ASP ILE VAL TYR ILE GLY LEU ARG ASP VAL SEQRES 15 A 323 ASP PRO GLY GLU HIS TYR ILE ILE LYS THR LEU GLY ILE SEQRES 16 A 323 LYS TYR PHE SER MET THR GLU VAL ASP LYS LEU GLY ILE SEQRES 17 A 323 GLY LYS VAL MET GLU GLU THR PHE SER TYR LEU LEU GLY SEQRES 18 A 323 ARG LYS LYS ARG PRO ILE HIS LEU SER PHE ASP VAL ASP SEQRES 19 A 323 GLY LEU ASP PRO VAL PHE THR PRO ALA THR GLY THR PRO SEQRES 20 A 323 VAL VAL GLY GLY LEU SER TYR ARG GLU GLY LEU TYR ILE SEQRES 21 A 323 THR GLU GLU ILE TYR LYS THR GLY LEU LEU SER GLY LEU SEQRES 22 A 323 ASP ILE MET GLU VAL ASN PRO THR LEU GLY LYS THR PRO SEQRES 23 A 323 GLU GLU VAL THR ARG THR VAL ASN THR ALA VAL ALA LEU SEQRES 24 A 323 THR LEU SER CYS PHE GLY THR LYS ARG GLU GLY ASN HIS SEQRES 25 A 323 LYS PRO GLU THR ASP TYR LEU LYS PRO PRO LYS SEQRES 1 B 323 MET SER SER LYS PRO LYS PRO ILE GLU ILE ILE GLY ALA SEQRES 2 B 323 PRO PHE SER LYS GLY GLN PRO ARG GLY GLY VAL GLU LYS SEQRES 3 B 323 GLY PRO ALA ALA LEU ARG LYS ALA GLY LEU VAL GLU LYS SEQRES 4 B 323 LEU LYS GLU THR GLU TYR ASN VAL ARG ASP HIS GLY ASP SEQRES 5 B 323 LEU ALA PHE VAL ASP VAL PRO ASN ASP SER PRO PHE GLN SEQRES 6 B 323 ILE VAL LYS ASN PRO ARG SER VAL GLY LYS ALA ASN GLU SEQRES 7 B 323 GLN LEU ALA ALA VAL VAL ALA GLU THR GLN LYS ASN GLY SEQRES 8 B 323 THR ILE SER VAL VAL LEU GLY GLY ASP HIS SER MET ALA SEQRES 9 B 323 ILE GLY SER ILE SER GLY HIS ALA ARG VAL HIS PRO ASP SEQRES 10 B 323 LEU CYS VAL ILE TRP VAL ASP ALA HIS THR ASP ILE ASN SEQRES 11 B 323 THR PRO LEU THR ALA SER SER GLY ASN LEU HIS GLY GLN SEQRES 12 B 323 PRO VAL ALA PHE LEU LEU LYS GLU LEU LYS GLY LYS PHE SEQRES 13 B 323 PRO ASP VAL PRO GLY PHE SER TRP VAL THR PRO CYS ILE SEQRES 14 B 323 SER ALA LYS ASP ILE VAL TYR ILE GLY LEU ARG ASP VAL SEQRES 15 B 323 ASP PRO GLY GLU HIS TYR ILE ILE LYS THR LEU GLY ILE SEQRES 16 B 323 LYS TYR PHE SER MET THR GLU VAL ASP LYS LEU GLY ILE SEQRES 17 B 323 GLY LYS VAL MET GLU GLU THR PHE SER TYR LEU LEU GLY SEQRES 18 B 323 ARG LYS LYS ARG PRO ILE HIS LEU SER PHE ASP VAL ASP SEQRES 19 B 323 GLY LEU ASP PRO VAL PHE THR PRO ALA THR GLY THR PRO SEQRES 20 B 323 VAL VAL GLY GLY LEU SER TYR ARG GLU GLY LEU TYR ILE SEQRES 21 B 323 THR GLU GLU ILE TYR LYS THR GLY LEU LEU SER GLY LEU SEQRES 22 B 323 ASP ILE MET GLU VAL ASN PRO THR LEU GLY LYS THR PRO SEQRES 23 B 323 GLU GLU VAL THR ARG THR VAL ASN THR ALA VAL ALA LEU SEQRES 24 B 323 THR LEU SER CYS PHE GLY THR LYS ARG GLU GLY ASN HIS SEQRES 25 B 323 LYS PRO GLU THR ASP TYR LEU LYS PRO PRO LYS SEQRES 1 C 323 MET SER SER LYS PRO LYS PRO ILE GLU ILE ILE GLY ALA SEQRES 2 C 323 PRO PHE SER LYS GLY GLN PRO ARG GLY GLY VAL GLU LYS SEQRES 3 C 323 GLY PRO ALA ALA LEU ARG LYS ALA GLY LEU VAL GLU LYS SEQRES 4 C 323 LEU LYS GLU THR GLU TYR ASN VAL ARG ASP HIS GLY ASP SEQRES 5 C 323 LEU ALA PHE VAL ASP VAL PRO ASN ASP SER PRO PHE GLN SEQRES 6 C 323 ILE VAL LYS ASN PRO ARG SER VAL GLY LYS ALA ASN GLU SEQRES 7 C 323 GLN LEU ALA ALA VAL VAL ALA GLU THR GLN LYS ASN GLY SEQRES 8 C 323 THR ILE SER VAL VAL LEU GLY GLY ASP HIS SER MET ALA SEQRES 9 C 323 ILE GLY SER ILE SER GLY HIS ALA ARG VAL HIS PRO ASP SEQRES 10 C 323 LEU CYS VAL ILE TRP VAL ASP ALA HIS THR ASP ILE ASN SEQRES 11 C 323 THR PRO LEU THR ALA SER SER GLY ASN LEU HIS GLY GLN SEQRES 12 C 323 PRO VAL ALA PHE LEU LEU LYS GLU LEU LYS GLY LYS PHE SEQRES 13 C 323 PRO ASP VAL PRO GLY PHE SER TRP VAL THR PRO CYS ILE SEQRES 14 C 323 SER ALA LYS ASP ILE VAL TYR ILE GLY LEU ARG ASP VAL SEQRES 15 C 323 ASP PRO GLY GLU HIS TYR ILE ILE LYS THR LEU GLY ILE SEQRES 16 C 323 LYS TYR PHE SER MET THR GLU VAL ASP LYS LEU GLY ILE SEQRES 17 C 323 GLY LYS VAL MET GLU GLU THR PHE SER TYR LEU LEU GLY SEQRES 18 C 323 ARG LYS LYS ARG PRO ILE HIS LEU SER PHE ASP VAL ASP SEQRES 19 C 323 GLY LEU ASP PRO VAL PHE THR PRO ALA THR GLY THR PRO SEQRES 20 C 323 VAL VAL GLY GLY LEU SER TYR ARG GLU GLY LEU TYR ILE SEQRES 21 C 323 THR GLU GLU ILE TYR LYS THR GLY LEU LEU SER GLY LEU SEQRES 22 C 323 ASP ILE MET GLU VAL ASN PRO THR LEU GLY LYS THR PRO SEQRES 23 C 323 GLU GLU VAL THR ARG THR VAL ASN THR ALA VAL ALA LEU SEQRES 24 C 323 THR LEU SER CYS PHE GLY THR LYS ARG GLU GLY ASN HIS SEQRES 25 C 323 LYS PRO GLU THR ASP TYR LEU LYS PRO PRO LYS HET MN A 500 1 HET MN A 501 1 HET S2C A 502 13 HET MN B 500 1 HET MN B 501 1 HET S2C B 502 13 HET MN C 500 1 HET MN C 501 1 HET S2C C 502 13 HETNAM MN MANGANESE (II) ION HETNAM S2C S-2-(BORONOETHYL)-L-CYSTEINE FORMUL 4 MN 6(MN 2+) FORMUL 6 S2C 3(C5 H13 B N O5 S 1-) FORMUL 13 HOH *339(H2 O) HELIX 1 1 GLY A 23 GLU A 25 5 3 HELIX 2 2 LYS A 26 ALA A 34 1 9 HELIX 3 3 GLY A 35 LYS A 41 1 7 HELIX 4 4 ASN A 69 ASN A 90 1 22 HELIX 5 5 ASP A 100 SER A 102 5 3 HELIX 6 6 MET A 103 HIS A 115 1 13 HELIX 7 7 ASN A 139 GLY A 142 5 4 HELIX 8 8 GLN A 143 LEU A 149 1 7 HELIX 9 9 SER A 170 LYS A 172 5 3 HELIX 10 10 ASP A 183 GLY A 194 1 12 HELIX 11 11 SER A 199 GLY A 207 1 9 HELIX 12 12 GLY A 207 GLY A 221 1 15 HELIX 13 13 ASP A 234 LEU A 236 5 3 HELIX 14 14 SER A 253 GLY A 268 1 16 HELIX 15 15 ASN A 279 GLY A 283 5 5 HELIX 16 16 THR A 285 CYS A 303 1 19 HELIX 17 17 GLY B 23 GLU B 25 5 3 HELIX 18 18 LYS B 26 ALA B 34 1 9 HELIX 19 19 GLY B 35 GLU B 42 1 8 HELIX 20 20 ASN B 69 ASN B 90 1 22 HELIX 21 21 ASP B 100 SER B 102 5 3 HELIX 22 22 MET B 103 HIS B 115 1 13 HELIX 23 23 ASN B 139 GLY B 142 5 4 HELIX 24 24 GLN B 143 LEU B 149 1 7 HELIX 25 25 ASP B 183 LEU B 193 1 11 HELIX 26 26 SER B 199 GLY B 207 1 9 HELIX 27 27 GLY B 207 GLY B 221 1 15 HELIX 28 28 ASP B 234 LEU B 236 5 3 HELIX 29 29 SER B 253 GLY B 268 1 16 HELIX 30 30 THR B 285 PHE B 304 1 20 HELIX 31 31 GLY C 22 GLU C 25 5 4 HELIX 32 32 LYS C 26 ALA C 34 1 9 HELIX 33 33 GLY C 35 GLU C 42 1 8 HELIX 34 34 ASN C 69 ASN C 90 1 22 HELIX 35 35 ASP C 100 SER C 102 5 3 HELIX 36 36 MET C 103 HIS C 115 1 13 HELIX 37 37 ASN C 139 GLY C 142 5 4 HELIX 38 38 GLN C 143 LEU C 149 1 7 HELIX 39 39 LYS C 150 LYS C 153 5 4 HELIX 40 40 ASP C 183 GLY C 194 1 12 HELIX 41 41 SER C 199 GLY C 207 1 9 HELIX 42 42 GLY C 207 LEU C 220 1 14 HELIX 43 43 ASP C 234 LEU C 236 5 3 HELIX 44 44 SER C 253 GLY C 268 1 16 HELIX 45 45 ASN C 279 GLY C 283 5 5 HELIX 46 46 THR C 285 PHE C 304 1 20 SHEET 1 A 8 VAL A 47 ASP A 52 0 SHEET 2 A 8 ILE A 8 GLY A 12 1 N ILE A 10 O HIS A 50 SHEET 3 A 8 ILE A 93 LEU A 97 1 O VAL A 95 N ILE A 11 SHEET 4 A 8 LEU A 270 MET A 276 1 O LEU A 273 N VAL A 96 SHEET 5 A 8 ILE A 227 ASP A 232 1 N ILE A 227 O SER A 271 SHEET 6 A 8 CYS A 119 VAL A 123 1 N CYS A 119 O HIS A 228 SHEET 7 A 8 ILE A 174 ILE A 177 1 O VAL A 175 N TRP A 122 SHEET 8 A 8 LYS A 196 PHE A 198 1 O LYS A 196 N TYR A 176 SHEET 1 B 8 VAL B 47 ASP B 52 0 SHEET 2 B 8 ILE B 8 GLY B 12 1 N GLY B 12 O GLY B 51 SHEET 3 B 8 ILE B 93 LEU B 97 1 O VAL B 95 N ILE B 11 SHEET 4 B 8 LEU B 270 MET B 276 1 O LEU B 273 N VAL B 96 SHEET 5 B 8 ILE B 227 ASP B 232 1 N LEU B 229 O GLY B 272 SHEET 6 B 8 CYS B 119 VAL B 123 1 N VAL B 123 O ASP B 232 SHEET 7 B 8 ILE B 174 ILE B 177 1 O VAL B 175 N TRP B 122 SHEET 8 B 8 LYS B 196 PHE B 198 1 O PHE B 198 N TYR B 176 SHEET 1 C 8 VAL C 47 ASP C 52 0 SHEET 2 C 8 ILE C 8 ALA C 13 1 N ILE C 10 O ARG C 48 SHEET 3 C 8 ILE C 93 GLY C 98 1 O VAL C 95 N ILE C 11 SHEET 4 C 8 LEU C 270 MET C 276 1 O LEU C 273 N VAL C 96 SHEET 5 C 8 ILE C 227 ASP C 232 1 N PHE C 231 O ASP C 274 SHEET 6 C 8 CYS C 119 VAL C 123 1 N VAL C 123 O ASP C 232 SHEET 7 C 8 ILE C 174 ILE C 177 1 O VAL C 175 N TRP C 122 SHEET 8 C 8 LYS C 196 PHE C 198 1 O PHE C 198 N TYR C 176 LINK OD2 ASP A 124 MN MN A 500 1555 1555 2.21 LINK OD1 ASP A 124 MN MN A 501 1555 1555 2.32 LINK OD2 ASP A 128 MN MN A 500 1555 1555 2.22 LINK OD2 ASP A 232 MN MN A 500 1555 1555 2.37 LINK OD2 ASP A 234 MN MN A 501 1555 1555 2.07 LINK MN MN A 500 O1 S2C A 502 1555 1555 2.40 LINK MN MN A 501 O1 S2C A 502 1555 1555 2.21 LINK OD2 ASP B 124 MN MN B 500 1555 1555 2.10 LINK OD1 ASP B 124 MN MN B 501 1555 1555 2.33 LINK OD2 ASP B 128 MN MN B 500 1555 1555 2.13 LINK OD2 ASP B 232 MN MN B 500 1555 1555 2.38 LINK OD2 ASP B 232 MN MN B 501 1555 1555 2.42 LINK OD2 ASP B 234 MN MN B 501 1555 1555 2.25 LINK MN MN B 500 O1 S2C B 502 1555 1555 2.27 LINK MN MN B 501 O1 S2C B 502 1555 1555 2.41 LINK OD2 ASP C 124 MN MN C 500 1555 1555 2.11 LINK OD1 ASP C 124 MN MN C 501 1555 1555 2.45 LINK OD2 ASP C 128 MN MN C 500 1555 1555 2.13 LINK OD2 ASP C 232 MN MN C 500 1555 1555 2.25 LINK OD2 ASP C 232 MN MN C 501 1555 1555 2.47 LINK OD1 ASP C 234 MN MN C 501 1555 1555 2.48 LINK OD2 ASP C 234 MN MN C 501 1555 1555 2.08 LINK MN MN C 500 O1 S2C C 502 1555 1555 2.46 LINK MN MN C 501 O1 S2C C 502 1555 1555 2.29 SITE 1 AC1 4 HIS A 101 ASP A 124 ASP A 128 ASP A 232 SITE 1 AC2 4 ASP A 124 HIS A 126 ASP A 232 ASP A 234 SITE 1 AC3 4 HIS B 101 ASP B 124 ASP B 128 ASP B 232 SITE 1 AC4 4 ASP B 124 HIS B 126 ASP B 232 ASP B 234 SITE 1 AC5 4 HIS C 101 ASP C 124 ASP C 128 ASP C 232 SITE 1 AC6 4 ASP C 124 HIS C 126 ASP C 232 ASP C 234 SITE 1 AC7 19 HIS B 101 ASP B 124 HIS B 126 ASP B 128 SITE 2 AC7 19 ASN B 130 SER B 137 HIS B 141 ASP B 183 SITE 3 AC7 19 GLU B 186 ASP B 232 ASP B 234 GLU B 277 SITE 4 AC7 19 HOH B 508 HOH B 510 HOH B 511 HOH B 517 SITE 5 AC7 19 HOH B 561 HOH B 579 HOH B 588 SITE 1 AC8 19 HIS A 101 ASP A 124 HIS A 126 ASP A 128 SITE 2 AC8 19 ASN A 130 SER A 137 HIS A 141 ASP A 183 SITE 3 AC8 19 GLU A 186 ASP A 232 ASP A 234 GLU A 277 SITE 4 AC8 19 HOH A 508 HOH A 512 HOH A 521 HOH A 563 SITE 5 AC8 19 HOH A 573 HOH A 585 HOH A 600 SITE 1 AC9 17 HIS C 101 ASP C 124 HIS C 126 ASP C 128 SITE 2 AC9 17 ASN C 130 SER C 137 HIS C 141 ASP C 183 SITE 3 AC9 17 GLU C 186 ASP C 232 ASP C 234 GLU C 277 SITE 4 AC9 17 HOH C 510 HOH C 532 HOH C 538 HOH C 569 SITE 5 AC9 17 HOH C 571 CRYST1 87.505 87.505 100.696 90.00 90.00 120.00 P 32 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011428 0.006598 0.000000 0.00000 SCALE2 0.000000 0.013196 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009931 0.00000