PDB Short entry for 3EDH HEADER HYDROLASE 03-SEP-08 3EDH TITLE CRYSTAL STRUCTURE OF BONE MORPHOGENETIC PROTEIN 1 PROTEASE DOMAIN IN TITLE 2 COMPLEX WITH PARTIALLY BOUND DMSO COMPND MOL_ID: 1; COMPND 2 MOLECULE: BONE MORPHOGENETIC PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PROTEASE DOMAIN; COMPND 5 SYNONYM: BMP-1, PROCOLLAGEN C-PROTEINASE, PCP, MAMMALIAN TOLLOID COMPND 6 PROTEIN, MTLD; COMPND 7 EC: 3.4.24.19; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BMP1, PCOLC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET24A KEYWDS VICINAL DISULFIDE, ALTERNATIVE SPLICING, CALCIUM, CHONDROGENESIS, KEYWDS 2 CLEAVAGE ON PAIR OF BASIC RESIDUES, CYTOKINE, DEVELOPMENTAL PROTEIN, KEYWDS 3 DIFFERENTIATION, EGF-LIKE DOMAIN, GLYCOPROTEIN, GROWTH FACTOR, KEYWDS 4 HYDROLASE, METAL-BINDING, METALLOPROTEASE, OSTEOGENESIS, KEYWDS 5 POLYMORPHISM, PROTEASE, ZINC, ZYMOGEN EXPDTA X-RAY DIFFRACTION AUTHOR A.MAC SWEENEY REVDAT 4 01-NOV-23 3EDH 1 REMARK LINK REVDAT 3 24-FEB-09 3EDH 1 VERSN REVDAT 2 23-SEP-08 3EDH 1 AUTHOR JRNL REVDAT 1 16-SEP-08 3EDH 0 JRNL AUTH A.MAC SWEENEY,S.G.PARRADO,D.VINZENZ,A.BERNARDI,A.HEIN, JRNL AUTH 2 U.BODENDORF,P.ERBEL,C.LOGEL,B.GERHARTZ JRNL TITL STRUCTURAL BASIS FOR THE SUBSTRATE SPECIFICITY OF BONE JRNL TITL 2 MORPHOGENETIC PROTEIN 1/TOLLOID-LIKE METALLOPROTEASES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 60271 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.142 REMARK 3 R VALUE (WORKING SET) : 0.140 REMARK 3 FREE R VALUE : 0.172 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3014 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4071 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.1680 REMARK 3 BIN FREE R VALUE SET COUNT : 214 REMARK 3 BIN FREE R VALUE : 0.2150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1613 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.57000 REMARK 3 B22 (A**2) : -0.39000 REMARK 3 B33 (A**2) : -0.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.043 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.043 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.022 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.108 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1774 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2414 ; 1.578 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 224 ; 6.418 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 90 ;28.530 ;21.889 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 288 ;13.396 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;15.808 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 257 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1387 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 972 ; 0.309 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1243 ; 0.316 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 307 ; 0.212 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.124 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 45 ; 0.313 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 28 ; 0.183 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1068 ; 1.627 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1723 ; 2.380 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 781 ; 3.038 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 677 ; 4.119 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1849 ; 1.740 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 412 ; 6.683 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 1720 ; 4.360 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3EDH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1000049185. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60273 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.250 REMARK 200 RESOLUTION RANGE LOW (A) : 59.090 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : 0.06600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.75 REMARK 200 R MERGE FOR SHELL (I) : 0.39400 REMARK 200 R SYM FOR SHELL (I) : 0.50000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.660 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3EDI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% DMSO, PH 7.5, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.74950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.72550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.54650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 34.72550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.74950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.54650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 170 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 442 O HOH A 545 1.91 REMARK 500 O HOH A 319 O HOH A 431 1.94 REMARK 500 O HOH A 608 O HOH A 613 1.95 REMARK 500 O HOH A 268 O HOH A 616 1.98 REMARK 500 O HOH A 352 O HOH A 545 2.02 REMARK 500 O HOH A 336 O HOH A 475 2.02 REMARK 500 O HOH A 466 O HOH A 611 2.04 REMARK 500 O HOH A 323 O HOH A 610 2.09 REMARK 500 O HOH A 380 O HOH A 439 2.18 REMARK 500 O HOH A 309 O HOH A 525 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 49 -78.79 -114.97 REMARK 500 CYS A 84 53.28 -165.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 210 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 92 NE2 REMARK 620 2 HIS A 96 NE2 100.0 REMARK 620 3 HIS A 102 NE2 110.4 99.7 REMARK 620 4 DMS A 214 O 133.7 107.3 101.0 REMARK 620 5 DMS A 214 O 115.7 104.7 121.9 21.3 REMARK 620 6 DMS A 214 S 104.6 136.5 104.4 32.9 31.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 211 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 189 NE2 REMARK 620 2 ACE A 201 O 80.6 REMARK 620 3 HOH A 221 O 79.9 89.9 REMARK 620 4 HOH A 224 O 95.8 175.6 87.0 REMARK 620 5 HOH A 228 O 74.3 103.6 148.2 77.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACE A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 215 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 216 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3EDG RELATED DB: PDB REMARK 900 BMP-1 REMARK 900 RELATED ID: 3EDI RELATED DB: PDB REMARK 900 HUMAN TLL-1 CATALYTIC DOMAIN REMARK 900 RELATED ID: 1DLE RELATED DB: PDB REMARK 900 ASTACIN DBREF 3EDH A 1 200 UNP P13497 BMP1_HUMAN 121 321 SEQRES 1 A 201 ALA ALA THR SER ARG PRO GLU ARG VAL TRP PRO ASP GLY SEQRES 2 A 201 VAL ILE PRO PHE VAL ILE GLY GLY ASN PHE THR GLY SER SEQRES 3 A 201 GLN ARG ALA VAL PHE ARG GLN ALA MET ARG HIS TRP GLU SEQRES 4 A 201 LYS HIS THR CYS VAL THR PHE LEU GLU ARG THR ASP GLU SEQRES 5 A 201 ASP SER TYR ILE VAL PHE THR TYR ARG PRO CYS GLY CYS SEQRES 6 A 201 CYS SER TYR VAL GLY ARG ARG GLY GLY GLY PRO GLN ALA SEQRES 7 A 201 ILE SER ILE GLY LYS ASN CYS ASP LYS PHE GLY ILE VAL SEQRES 8 A 201 VAL HIS GLU LEU GLY HIS VAL VAL GLY PHE TRP HIS GLU SEQRES 9 A 201 HIS THR ARG PRO ASP ARG ASP ARG HIS VAL SER ILE VAL SEQRES 10 A 201 ARG GLU ASN ILE GLN PRO GLY GLN GLU TYR ASN PHE LEU SEQRES 11 A 201 LYS MET GLU PRO GLN GLU VAL GLU SER LEU GLY GLU THR SEQRES 12 A 201 TYR ASP PHE ASP SER ILE MET HIS TYR ALA ARG ASN THR SEQRES 13 A 201 PHE SER ARG GLY ILE PHE LEU ASP THR ILE VAL PRO LYS SEQRES 14 A 201 TYR GLU VAL ASN GLY VAL LYS PRO PRO ILE GLY GLN ARG SEQRES 15 A 201 THR ARG LEU SER LYS GLY ASP ILE ALA GLN ALA ARG LYS SEQRES 16 A 201 LEU TYR LYS CYS PRO ALA HET ACE A 201 3 HET ZN A 210 1 HET ZN A 211 1 HET DMS A 212 4 HET DMS A 213 4 HET DMS A 214 8 HET DMS A 215 4 HET DMS A 216 4 HETNAM ACE ACETYL GROUP HETNAM ZN ZINC ION HETNAM DMS DIMETHYL SULFOXIDE FORMUL 2 ACE C2 H4 O FORMUL 3 ZN 2(ZN 2+) FORMUL 5 DMS 5(C2 H6 O S) FORMUL 10 HOH *410(H2 O) HELIX 1 1 ARG A 5 VAL A 9 5 5 HELIX 2 2 TRP A 10 ASP A 12 5 3 HELIX 3 3 THR A 23 THR A 41 1 19 HELIX 4 4 GLY A 81 ASP A 85 5 5 HELIX 5 5 LYS A 86 GLY A 99 1 14 HELIX 6 6 HIS A 102 ARG A 106 5 5 HELIX 7 7 ASP A 108 ARG A 111 5 4 HELIX 8 8 ARG A 117 ILE A 120 5 4 HELIX 9 9 GLN A 124 LEU A 129 5 6 HELIX 10 10 GLU A 132 VAL A 134 5 5 HELIX 11 11 SER A 183 TYR A 194 1 12 SHEET 1 A 4 THR A 44 GLU A 47 0 SHEET 2 A 4 VAL A 14 ILE A 19 1 N ILE A 15 O THR A 44 SHEET 3 A 4 TYR A 54 TYR A 59 1 O ILE A 55 N PRO A 16 SHEET 4 A 4 PRO A 74 ILE A 79 1 O ILE A 77 N THR A 58 SHEET 1 B 2 VAL A 113 ILE A 115 0 SHEET 2 B 2 ILE A 164 PRO A 166 -1 O VAL A 165 N SER A 114 SSBOND 1 CYS A 42 CYS A 198 1555 1555 2.05 SSBOND 2 CYS A 62 CYS A 84 1555 1555 2.05 SSBOND 3 CYS A 64 CYS A 65 1555 1555 2.02 LINK N ALA A 1 C ACE A 201 1555 1555 1.39 LINK NE2 HIS A 92 ZN ZN A 210 1555 1555 2.03 LINK NE2 HIS A 96 ZN ZN A 210 1555 1555 2.06 LINK NE2 HIS A 102 ZN ZN A 210 1555 1555 2.05 LINK NE2 GLN A 189 ZN ZN A 211 1555 1555 2.39 LINK O ACE A 201 ZN ZN A 211 1555 1555 2.32 LINK ZN ZN A 210 O ADMS A 214 1555 1555 1.86 LINK ZN ZN A 210 O BDMS A 214 1555 1555 1.83 LINK ZN ZN A 210 S ADMS A 214 1555 1555 2.97 LINK ZN ZN A 211 O HOH A 221 1555 1555 2.39 LINK ZN ZN A 211 O HOH A 224 1555 1555 2.39 LINK ZN ZN A 211 O HOH A 228 1555 1555 2.39 CISPEP 1 CYS A 64 CYS A 65 0 15.75 SITE 1 AC1 6 ALA A 1 ALA A 2 GLU A 103 ARG A 106 SITE 2 AC1 6 SER A 136 GLN A 189 SITE 1 AC2 3 HIS A 92 HIS A 96 HIS A 102 SITE 1 AC3 5 GLU A 103 GLN A 189 HOH A 221 HOH A 224 SITE 2 AC3 5 HOH A 228 SITE 1 AC4 7 LYS A 39 HIS A 40 ARG A 106 ASP A 108 SITE 2 AC4 7 GLU A 139 HOH A 290 HOH A 581 SITE 1 AC5 5 ARG A 35 LYS A 39 LYS A 192 HOH A 462 SITE 2 AC5 5 HOH A 594 SITE 1 AC6 10 CYS A 64 HIS A 92 GLU A 93 HIS A 96 SITE 2 AC6 10 HIS A 102 HOH A 297 HOH A 306 HOH A 314 SITE 3 AC6 10 HOH A 604 HOH A 609 SITE 1 AC7 4 ASP A 50 ARG A 176 THR A 180 HOH A 536 SITE 1 AC8 4 ARG A 31 GLU A 38 PHE A 45 HOH A 546 CRYST1 53.499 59.093 69.451 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018692 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016922 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014399 0.00000