PDB Short entry for 3EVS HEADER CYTOKINE/TRANSFERASE RECEPTOR 13-OCT-08 3EVS TITLE CRYSTAL STRUCTURE OF THE GDF-5:BMP RECEPTOR IB COMPLEX. COMPND MOL_ID: 1; COMPND 2 MOLECULE: GROWTH/DIFFERENTIATION FACTOR 5; COMPND 3 CHAIN: B; COMPND 4 FRAGMENT: UNP RESIDUES 387-501; COMPND 5 SYNONYM: GDF-5, CARTILAGE-DERIVED MORPHOGENETIC PROTEIN 1, CDMP-1, COMPND 6 RADOTERMIN; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: BONE MORPHOGENETIC PROTEIN RECEPTOR TYPE-1B; COMPND 10 CHAIN: C; COMPND 11 FRAGMENT: EXTRACELLULAR DOMAIN; COMPND 12 SYNONYM: SERINE/THREONINE-PROTEIN KINASE RECEPTOR R6, SKR6, ACTIVIN COMPND 13 RECEPTOR-LIKE KINASE 6, ALK-6; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 STRAIN: U2OS; SOURCE 6 GENE: CDMP1, GDF5; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: RBSIIN25X/O; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 14 ORGANISM_COMMON: MOUSE; SOURCE 15 ORGANISM_TAXID: 10090; SOURCE 16 GENE: ACVRLK6, BMPR1B; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 19 EXPRESSION_SYSTEM_STRAIN: AD494(DE3); SOURCE 20 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 21 EXPRESSION_SYSTEM_PLASMID: PET32A KEYWDS LIGAND-RECEPTOR COMPLEX, CYSTIN-KNOT LIGAND; THREE-FINGER TOXN FOLD KEYWDS 2 (RECEPTOR), CLEAVAGE ON PAIR OF BASIC RESIDUES, CYTOKINE, DISEASE KEYWDS 3 MUTATION, DWARFISM, GLYCOPROTEIN, GROWTH FACTOR, SECRETED, ATP- KEYWDS 4 BINDING, KINASE, MAGNESIUM, MANGANESE, MEMBRANE, METAL-BINDING, KEYWDS 5 NUCLEOTIDE-BINDING, RECEPTOR, SERINE/THREONINE-PROTEIN KINASE, KEYWDS 6 TRANSFERASE, TRANSMEMBRANE, CYTOKINE-TRANSFERASE RECEPTOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.KOTZSCH,T.D.MUELLER REVDAT 4 27-DEC-23 3EVS 1 SEQADV REVDAT 3 13-JUL-11 3EVS 1 VERSN REVDAT 2 09-JUN-09 3EVS 1 JRNL REVDAT 1 10-MAR-09 3EVS 0 JRNL AUTH A.KOTZSCH,J.NICKEL,A.SEHER,W.SEBALD,T.D.MULLER JRNL TITL CRYSTAL STRUCTURE ANALYSIS REVEALS A SPRING-LOADED LATCH AS JRNL TITL 2 MOLECULAR MECHANISM FOR GDF-5-TYPE I RECEPTOR SPECIFICITY. JRNL REF EMBO J. V. 28 937 2009 JRNL REFN ISSN 0261-4189 JRNL PMID 19229295 JRNL DOI 10.1038/EMBOJ.2009.37 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 14814 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 752 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1016 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2890 REMARK 3 BIN FREE R VALUE SET COUNT : 51 REMARK 3 BIN FREE R VALUE : 0.2410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1483 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 51 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.81000 REMARK 3 B22 (A**2) : -2.81000 REMARK 3 B33 (A**2) : 5.63000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.203 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.181 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.128 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.020 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1528 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2083 ; 1.339 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 187 ; 7.728 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 72 ;34.453 ;24.306 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 251 ;20.705 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;19.031 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 227 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1178 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 607 ; 0.257 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1043 ; 0.325 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 117 ; 0.223 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 55 ; 0.357 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.296 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 965 ; 1.249 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1557 ; 2.126 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 610 ; 2.969 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 526 ; 3.996 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 17 B 120 REMARK 3 ORIGIN FOR THE GROUP (A): 8.9075 37.3611 26.3631 REMARK 3 T TENSOR REMARK 3 T11: -0.1995 T22: -0.2046 REMARK 3 T33: -0.4175 T12: -0.0378 REMARK 3 T13: 0.0311 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 8.6464 L22: 3.5828 REMARK 3 L33: 0.9053 L12: 3.1884 REMARK 3 L13: 1.5301 L23: 0.8291 REMARK 3 S TENSOR REMARK 3 S11: -0.1248 S12: 0.5971 S13: -0.3053 REMARK 3 S21: -0.1161 S22: 0.2510 S23: -0.2677 REMARK 3 S31: -0.0960 S32: 0.1130 S33: -0.1263 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 16 C 21 REMARK 3 RESIDUE RANGE : C 31 C 45 REMARK 3 RESIDUE RANGE : C 50 C 72 REMARK 3 RESIDUE RANGE : C 77 C 100 REMARK 3 ORIGIN FOR THE GROUP (A): 10.2798 61.1077 24.7935 REMARK 3 T TENSOR REMARK 3 T11: -0.1496 T22: -0.2211 REMARK 3 T33: -0.1023 T12: -0.0695 REMARK 3 T13: 0.0596 T23: 0.0626 REMARK 3 L TENSOR REMARK 3 L11: 8.4013 L22: 11.7964 REMARK 3 L33: 6.3346 L12: 1.2836 REMARK 3 L13: -1.2110 L23: -1.8333 REMARK 3 S TENSOR REMARK 3 S11: 0.1421 S12: 0.3335 S13: 0.9998 REMARK 3 S21: -0.0144 S22: 0.0936 S23: -0.0009 REMARK 3 S31: -0.5937 S32: -0.2037 S33: -0.2357 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3EVS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-OCT-08. REMARK 100 THE DEPOSITION ID IS D_1000049828. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-06; 07-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 5.25 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SLS; BESSY REMARK 200 BEAMLINE : X06SA; 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.10485; 0.97962, 0.97979, REMARK 200 0.90789 REMARK 200 MONOCHROMATOR : SI-111 CRYSTAL; SI-111 CRYSTAL REMARK 200 OPTICS : MIRRORS; MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD; MARMOSAIC REMARK 200 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR REMARK 200 DATA SCALING SOFTWARE : D*TREK 9.4SSI, CRYSTALCLEAR REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14815 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 34.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 9.660 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.87 REMARK 200 R MERGE FOR SHELL (I) : 0.35400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP, DM 6.0 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE, 50% PPG 400, 30MM REMARK 280 MAGNESIUM SULFATE, PH 5.25, VAPOR DIFFUSION, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 38.22750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.22750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 41.39200 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.22750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 38.22750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 41.39200 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 38.22750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.22750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 41.39200 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 38.22750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.22750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 41.39200 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 76.45500 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 4 REMARK 465 LYS B 5 REMARK 465 ARG B 6 REMARK 465 GLN B 7 REMARK 465 GLY B 8 REMARK 465 LYS B 9 REMARK 465 ARG B 10 REMARK 465 PRO B 11 REMARK 465 SER B 12 REMARK 465 LYS B 13 REMARK 465 ASN B 14 REMARK 465 LEU B 15 REMARK 465 LYS B 16 REMARK 465 GLY C -5 REMARK 465 SER C -4 REMARK 465 GLY C -3 REMARK 465 ALA C -2 REMARK 465 MET C -1 REMARK 465 ALA C 0 REMARK 465 LYS C 1 REMARK 465 LYS C 2 REMARK 465 GLU C 3 REMARK 465 ASP C 4 REMARK 465 GLY C 5 REMARK 465 GLU C 6 REMARK 465 SER C 7 REMARK 465 THR C 8 REMARK 465 ALA C 9 REMARK 465 PRO C 10 REMARK 465 THR C 11 REMARK 465 PRO C 12 REMARK 465 ARG C 13 REMARK 465 PRO C 14 REMARK 465 LYS C 15 REMARK 465 LYS C 101 REMARK 465 ASP C 102 REMARK 465 ARG C 103 REMARK 465 ASP C 104 REMARK 465 PHE C 105 REMARK 465 VAL C 106 REMARK 465 ASP C 107 REMARK 465 GLY C 108 REMARK 465 PRO C 109 REMARK 465 ILE C 110 REMARK 465 HIS C 111 REMARK 465 HIS C 112 REMARK 465 LYS C 113 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 125 O HOH B 139 8666 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE B 46 155.70 61.24 REMARK 500 GLU B 61 61.32 33.61 REMARK 500 ASP B 76 89.25 -150.24 REMARK 500 HIS C 22 -54.65 -129.33 REMARK 500 HIS C 23 -138.19 72.05 REMARK 500 HIS C 24 100.86 61.58 REMARK 500 GLU C 27 57.49 -93.27 REMARK 500 SER C 29 91.82 -178.28 REMARK 500 ASP C 48 -33.50 -39.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU C 27 ASP C 28 148.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1REW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BMP-2 WITH THE EXTRACELLULAR DOMAIN OF BMPR-IA REMARK 900 RELATED ID: 1WAQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GDF-5 REMARK 900 RELATED ID: 2K3G RELATED DB: PDB REMARK 900 NMR STRUCTURE OF BMPR-IA REMARK 900 RELATED ID: 2QJB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BMP-2 WITH THE EXTRACELLULAR DOMAIN OF A BMPR- REMARK 900 IA/IB CHIMERA REMARK 900 RELATED ID: 2H62 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BMP-2 WITH THE EXTRACELLULAR DOMAINS OF BMPR- REMARK 900 IA AND ACTR-IIB DBREF 3EVS B 6 120 UNP P43026 GDF5_HUMAN 387 501 DBREF 3EVS C 1 113 UNP P36898 BMR1B_MOUSE 14 126 SEQADV 3EVS MET B 4 UNP P43026 EXPRESSION TAG SEQADV 3EVS LYS B 5 UNP P43026 EXPRESSION TAG SEQADV 3EVS GLY C -5 UNP P36898 EXPRESSION TAG SEQADV 3EVS SER C -4 UNP P36898 EXPRESSION TAG SEQADV 3EVS GLY C -3 UNP P36898 EXPRESSION TAG SEQADV 3EVS ALA C -2 UNP P36898 EXPRESSION TAG SEQADV 3EVS MET C -1 UNP P36898 EXPRESSION TAG SEQADV 3EVS ALA C 0 UNP P36898 EXPRESSION TAG SEQRES 1 B 117 MET LYS ARG GLN GLY LYS ARG PRO SER LYS ASN LEU LYS SEQRES 2 B 117 ALA ARG CYS SER ARG LYS ALA LEU HIS VAL ASN PHE LYS SEQRES 3 B 117 ASP MET GLY TRP ASP ASP TRP ILE ILE ALA PRO LEU GLU SEQRES 4 B 117 TYR GLU ALA PHE HIS CYS GLU GLY LEU CYS GLU PHE PRO SEQRES 5 B 117 LEU ARG SER HIS LEU GLU PRO THR ASN HIS ALA VAL ILE SEQRES 6 B 117 GLN THR LEU MET ASN SER MET ASP PRO GLU SER THR PRO SEQRES 7 B 117 PRO THR CYS CYS VAL PRO THR ARG LEU SER PRO ILE SER SEQRES 8 B 117 ILE LEU PHE ILE ASP SER ALA ASN ASN VAL VAL TYR LYS SEQRES 9 B 117 GLN TYR GLU ASP MET VAL VAL GLU SER CYS GLY CYS ARG SEQRES 1 C 119 GLY SER GLY ALA MET ALA LYS LYS GLU ASP GLY GLU SER SEQRES 2 C 119 THR ALA PRO THR PRO ARG PRO LYS ILE LEU ARG CYS LYS SEQRES 3 C 119 CYS HIS HIS HIS CYS PRO GLU ASP SER VAL ASN ASN ILE SEQRES 4 C 119 CYS SER THR ASP GLY TYR CYS PHE THR MET ILE GLU GLU SEQRES 5 C 119 ASP ASP SER GLY MET PRO VAL VAL THR SER GLY CYS LEU SEQRES 6 C 119 GLY LEU GLU GLY SER ASP PHE GLN CYS ARG ASP THR PRO SEQRES 7 C 119 ILE PRO HIS GLN ARG ARG SER ILE GLU CYS CYS THR GLU SEQRES 8 C 119 ARG ASN GLU CYS ASN LYS ASP LEU HIS PRO THR LEU PRO SEQRES 9 C 119 PRO LEU LYS ASP ARG ASP PHE VAL ASP GLY PRO ILE HIS SEQRES 10 C 119 HIS LYS FORMUL 3 HOH *51(H2 O) HELIX 1 1 LYS B 29 ASP B 35 5 7 HELIX 2 2 ARG B 57 GLU B 61 5 5 HELIX 3 3 THR B 63 ASP B 76 1 14 HELIX 4 4 GLY C 63 CYS C 68 1 6 HELIX 5 5 GLU C 88 LEU C 93 5 6 SHEET 1 A 2 SER B 20 LYS B 22 0 SHEET 2 A 2 HIS B 47 GLU B 49 -1 O HIS B 47 N LYS B 22 SHEET 1 B 2 HIS B 25 ASN B 27 0 SHEET 2 B 2 GLU B 42 GLU B 44 -1 O TYR B 43 N VAL B 26 SHEET 1 C 3 ILE B 37 ALA B 39 0 SHEET 2 C 3 CYS B 85 ILE B 98 -1 O LEU B 96 N ALA B 39 SHEET 3 C 3 VAL B 104 CYS B 119 -1 O VAL B 105 N PHE B 97 SHEET 1 D 2 LEU C 17 LYS C 20 0 SHEET 2 D 2 ILE C 33 THR C 36 -1 O THR C 36 N LEU C 17 SHEET 1 E 3 PRO C 52 LEU C 59 0 SHEET 2 E 3 TYR C 39 GLU C 46 -1 N GLU C 45 O VAL C 53 SHEET 3 E 3 ARG C 78 CYS C 83 -1 O SER C 79 N ILE C 44 SSBOND 1 CYS B 19 CYS B 85 1555 1555 2.04 SSBOND 2 CYS B 48 CYS B 117 1555 1555 2.05 SSBOND 3 CYS B 52 CYS B 119 1555 1555 2.03 SSBOND 4 CYS B 84 CYS B 84 1555 2565 2.28 SSBOND 5 CYS C 19 CYS C 40 1555 1555 2.04 SSBOND 6 CYS C 21 CYS C 25 1555 1555 2.04 SSBOND 7 CYS C 34 CYS C 58 1555 1555 2.06 SSBOND 8 CYS C 68 CYS C 82 1555 1555 2.04 SSBOND 9 CYS C 83 CYS C 89 1555 1555 2.07 CISPEP 1 ALA B 39 PRO B 40 0 -7.00 CISPEP 2 PHE B 54 PRO B 55 0 -3.48 CRYST1 76.455 76.455 82.784 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013080 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013080 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012080 0.00000