PDB Short entry for 3F8I HEADER LIGASE/DNA 12-NOV-08 3F8I TITLE MOUSE UHRF1 SRA DOMAIN BOUND WITH HEMI-METHYLATED CPG, CRYSTAL TITLE 2 STRUCTURE IN SPACE GROUP P21 COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE UHRF1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: YDG DOMAIN: UNP RESIDUES 419-628; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 5'-D(*DCP*DCP*DAP*DTP*DGP*(5CM)P*DGP*DCP*DTP*DGP*DAP*DC)- COMPND 8 3'; COMPND 9 CHAIN: D, F; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: 5'-D(*DGP*DTP*DCP*DAP*DGP*DCP*DGP*DCP*DAP*DTP*DGP*DG)-3'; COMPND 13 CHAIN: E, G; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: UHRF1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PXC666; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: SYNTHETIC DNA OLIGO; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 OTHER_DETAILS: SYNTHETIC DNA OLIGO KEYWDS UHRF1, BASE FLIPPING, 5-METHYLCYTOSINE, CPG METHYLATION, CELL CYCLE, KEYWDS 2 DEVELOPMENTAL PROTEIN, DNA DAMAGE, DNA REPAIR, DNA-BINDING, LIGASE, KEYWDS 3 METAL-BINDING, NUCLEUS, PHOSPHOPROTEIN, TRANSCRIPTION, TRANSCRIPTION KEYWDS 4 REGULATION, UBL CONJUGATION, UBL CONJUGATION PATHWAY, ZINC, ZINC- KEYWDS 5 FINGER, LIGASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.HASHIMOTO,J.R.HORTON,X.ZHANG,X.CHENG REVDAT 4 06-SEP-23 3F8I 1 COMPND SOURCE DBREF SEQADV REVDAT 4 2 1 LINK REVDAT 3 24-MAR-09 3F8I 1 JRNL REVDAT 2 20-JAN-09 3F8I 1 JRNL REVDAT 1 06-JAN-09 3F8I 0 JRNL AUTH H.HASHIMOTO,J.R.HORTON,X.ZHANG,X.CHENG JRNL TITL UHRF1, A MODULAR MULTI-DOMAIN PROTEIN, REGULATES JRNL TITL 2 REPLICATION-COUPLED CROSSTALK BETWEEN DNA METHYLATION AND JRNL TITL 3 HISTONE MODIFICATIONS. JRNL REF EPIGENETICS V. 4 8 2009 JRNL REFN ISSN 1559-2294 JRNL PMID 19077538 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.HASHIMOTO,J.R.HORTON,X.ZHANG,M.BOSTICK,S.E.JACOBSEN, REMARK 1 AUTH 2 X.CHENG REMARK 1 TITL THE SRA DOMAIN OF UHRF1 FLIPS 5-METHYLCYTOSINE OUT OF THE REMARK 1 TITL 2 DNA HELIX. REMARK 1 REF NATURE V. 455 826 2008 REMARK 1 REFN ISSN 0028-0836 REMARK 1 PMID 18772888 REMARK 1 DOI 10.1038/NATURE07280 REMARK 2 REMARK 2 RESOLUTION. 2.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 622448.070 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 88.5 REMARK 3 NUMBER OF REFLECTIONS : 27777 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1351 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.29 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.37 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 63.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1869 REMARK 3 BIN R VALUE (WORKING SET) : 0.3590 REMARK 3 BIN FREE R VALUE : 0.4220 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 101 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.042 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3204 REMARK 3 NUCLEIC ACID ATOMS : 974 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 135 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 19.56000 REMARK 3 B22 (A**2) : -17.03000 REMARK 3 B33 (A**2) : -2.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 7.74000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM SIGMAA (A) : 0.39 REMARK 3 LOW RESOLUTION CUTOFF (A) : 35.0 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.45 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.080 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.220 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.960 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.940 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.950 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 32.01 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER.PARAM REMARK 3 PARAMETER FILE 4 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3F8I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1000050279. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30041 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.290 REMARK 200 RESOLUTION RANGE LOW (A) : 34.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.35200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2ZO0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.4M NACL, PH 7.0, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.20800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ASYMMETRIC UNIT CONTAINS TWO SRA-DNA COMPLEXES. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 623 REMARK 465 LYS A 624 REMARK 465 SER A 625 REMARK 465 ARG A 626 REMARK 465 LYS A 627 REMARK 465 ARG A 628 REMARK 465 GLU B 623 REMARK 465 LYS B 624 REMARK 465 SER B 625 REMARK 465 ARG B 626 REMARK 465 LYS B 627 REMARK 465 ARG B 628 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 529 CG CD OE1 OE2 REMARK 470 LYS A 547 CG CD CE NZ REMARK 470 GLU A 597 CG CD OE1 OE2 REMARK 470 GLU A 613 CG CD OE1 OE2 REMARK 470 GLU A 617 CG CD OE1 OE2 REMARK 470 LYS A 622 CG CD CE NZ REMARK 470 GLU B 529 CG CD OE1 OE2 REMARK 470 LYS B 547 CG CD CE NZ REMARK 470 ARG B 596 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 597 CD OE1 OE2 REMARK 470 GLU B 613 CG CD OE1 OE2 REMARK 470 GLU B 617 CG CD OE1 OE2 REMARK 470 ASN B 621 CG OD1 ND2 REMARK 470 LYS B 622 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 451 -54.42 -124.52 REMARK 500 ASP A 460 -56.92 -137.99 REMARK 500 ASN A 508 -127.40 39.75 REMARK 500 ASP A 530 70.75 87.44 REMARK 500 TRP A 531 -39.92 -36.29 REMARK 500 ASN B 421 30.91 -97.19 REMARK 500 VAL B 451 -57.07 -126.26 REMARK 500 ASP B 460 -56.02 -131.46 REMARK 500 ASN B 508 -125.70 44.28 REMARK 500 ASP B 530 84.71 75.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DG E 433 0.08 SIDE CHAIN REMARK 500 DG G 433 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZO0 RELATED DB: PDB REMARK 900 SRA-DNA COMPLEX IN P2(1)2(1)2(1) SPACE GROUP REMARK 900 RELATED ID: 2ZO1 RELATED DB: PDB REMARK 900 SRA-DNA COMPLEX IN P4(1)2(1)2 SPACE GROUP REMARK 900 RELATED ID: 2ZO2 RELATED DB: PDB REMARK 900 SRA-DNA NON-SPECIFIC COMPLEX IN P6(1)22 SPACE GROUP REMARK 900 RELATED ID: 3F8J RELATED DB: PDB REMARK 900 SRA-DNA COMPLEX IN C222(1) SPACE GROUP DBREF 3F8I A 418 628 UNP Q8VDF2 UHRF1_MOUSE 418 628 DBREF 3F8I B 418 628 UNP Q8VDF2 UHRF1_MOUSE 418 628 DBREF 3F8I D 402 413 PDB 3F8I 3F8I 402 413 DBREF 3F8I E 421 433 PDB 3F8I 3F8I 421 433 DBREF 3F8I F 402 413 PDB 3F8I 3F8I 402 413 DBREF 3F8I G 421 433 PDB 3F8I 3F8I 421 433 SEQADV 3F8I HIS A 417 UNP Q8VDF2 EXPRESSION TAG SEQADV 3F8I MET A 418 UNP Q8VDF2 VAL 418 CONFLICT SEQADV 3F8I HIS B 417 UNP Q8VDF2 EXPRESSION TAG SEQADV 3F8I MET B 418 UNP Q8VDF2 VAL 418 CONFLICT SEQRES 1 A 212 HIS MET PRO ALA ASN HIS PHE GLY PRO ILE PRO GLY VAL SEQRES 2 A 212 PRO VAL GLY THR MET TRP ARG PHE ARG VAL GLN VAL SER SEQRES 3 A 212 GLU SER GLY VAL HIS ARG PRO HIS VAL ALA GLY ILE HIS SEQRES 4 A 212 GLY ARG SER ASN ASP GLY ALA TYR SER LEU VAL LEU ALA SEQRES 5 A 212 GLY GLY TYR GLU ASP ASP VAL ASP ASN GLY ASN TYR PHE SEQRES 6 A 212 THR TYR THR GLY SER GLY GLY ARG ASP LEU SER GLY ASN SEQRES 7 A 212 LYS ARG THR ALA GLY GLN SER SER ASP GLN LYS LEU THR SEQRES 8 A 212 ASN ASN ASN ARG ALA LEU ALA LEU ASN CYS HIS SER PRO SEQRES 9 A 212 ILE ASN GLU LYS GLY ALA GLU ALA GLU ASP TRP ARG GLN SEQRES 10 A 212 GLY LYS PRO VAL ARG VAL VAL ARG ASN MET LYS GLY GLY SEQRES 11 A 212 LYS HIS SER LYS TYR ALA PRO ALA GLU GLY ASN ARG TYR SEQRES 12 A 212 ASP GLY ILE TYR LYS VAL VAL LYS TYR TRP PRO GLU ARG SEQRES 13 A 212 GLY LYS SER GLY PHE LEU VAL TRP ARG TYR LEU LEU ARG SEQRES 14 A 212 ARG ASP ASP THR GLU PRO GLU PRO TRP THR ARG GLU GLY SEQRES 15 A 212 LYS ASP ARG THR ARG GLN LEU GLY LEU THR MET GLN TYR SEQRES 16 A 212 PRO GLU GLY TYR LEU GLU ALA LEU ALA ASN LYS GLU LYS SEQRES 17 A 212 SER ARG LYS ARG SEQRES 1 B 212 HIS MET PRO ALA ASN HIS PHE GLY PRO ILE PRO GLY VAL SEQRES 2 B 212 PRO VAL GLY THR MET TRP ARG PHE ARG VAL GLN VAL SER SEQRES 3 B 212 GLU SER GLY VAL HIS ARG PRO HIS VAL ALA GLY ILE HIS SEQRES 4 B 212 GLY ARG SER ASN ASP GLY ALA TYR SER LEU VAL LEU ALA SEQRES 5 B 212 GLY GLY TYR GLU ASP ASP VAL ASP ASN GLY ASN TYR PHE SEQRES 6 B 212 THR TYR THR GLY SER GLY GLY ARG ASP LEU SER GLY ASN SEQRES 7 B 212 LYS ARG THR ALA GLY GLN SER SER ASP GLN LYS LEU THR SEQRES 8 B 212 ASN ASN ASN ARG ALA LEU ALA LEU ASN CYS HIS SER PRO SEQRES 9 B 212 ILE ASN GLU LYS GLY ALA GLU ALA GLU ASP TRP ARG GLN SEQRES 10 B 212 GLY LYS PRO VAL ARG VAL VAL ARG ASN MET LYS GLY GLY SEQRES 11 B 212 LYS HIS SER LYS TYR ALA PRO ALA GLU GLY ASN ARG TYR SEQRES 12 B 212 ASP GLY ILE TYR LYS VAL VAL LYS TYR TRP PRO GLU ARG SEQRES 13 B 212 GLY LYS SER GLY PHE LEU VAL TRP ARG TYR LEU LEU ARG SEQRES 14 B 212 ARG ASP ASP THR GLU PRO GLU PRO TRP THR ARG GLU GLY SEQRES 15 B 212 LYS ASP ARG THR ARG GLN LEU GLY LEU THR MET GLN TYR SEQRES 16 B 212 PRO GLU GLY TYR LEU GLU ALA LEU ALA ASN LYS GLU LYS SEQRES 17 B 212 SER ARG LYS ARG SEQRES 1 D 12 DC DC DA DT DG 5CM DG DC DT DG DA DC SEQRES 1 E 12 DG DT DC DA DG DC DG DC DA DT DG DG SEQRES 1 F 12 DC DC DA DT DG 5CM DG DC DT DG DA DC SEQRES 1 G 12 DG DT DC DA DG DC DG DC DA DT DG DG MODRES 3F8I 5CM D 407 DC MODRES 3F8I 5CM F 407 DC HET 5CM D 407 20 HET 5CM F 407 20 HETNAM 5CM 5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE FORMUL 3 5CM 2(C10 H16 N3 O7 P) FORMUL 7 HOH *135(H2 O) HELIX 1 1 PHE A 437 SER A 444 1 8 HELIX 2 2 THR A 507 LEU A 515 1 9 HELIX 3 3 ASP A 530 GLY A 534 5 5 HELIX 4 4 LYS A 544 LYS A 547 5 4 HELIX 5 5 THR A 595 LEU A 605 1 11 HELIX 6 6 GLY A 614 ASN A 621 1 8 HELIX 7 7 PHE B 437 SER B 444 1 8 HELIX 8 8 THR B 507 LEU B 515 1 9 HELIX 9 9 ASP B 530 GLY B 534 5 5 HELIX 10 10 LYS B 544 HIS B 548 5 5 HELIX 11 11 THR B 595 LEU B 605 1 11 HELIX 12 12 GLY B 614 LYS B 622 1 9 SHEET 1 A 5 MET A 434 TRP A 435 0 SHEET 2 A 5 ASN A 557 ARG A 572 -1 O ASN A 557 N TRP A 435 SHEET 3 A 5 LEU A 578 ARG A 586 -1 O LEU A 583 N LYS A 567 SHEET 4 A 5 TYR A 480 THR A 484 -1 N TYR A 483 O TYR A 582 SHEET 5 A 5 VAL A 475 ASN A 477 -1 N VAL A 475 O THR A 482 SHEET 1 B 5 ILE A 454 ARG A 457 0 SHEET 2 B 5 GLY A 461 LEU A 467 -1 O TYR A 463 N HIS A 455 SHEET 3 B 5 VAL A 537 ASN A 542 1 O ASN A 542 N LEU A 467 SHEET 4 B 5 ASN A 557 ARG A 572 -1 O ARG A 558 N ARG A 541 SHEET 5 B 5 ALA A 526 GLU A 527 -1 N ALA A 526 O TYR A 568 SHEET 1 C 5 MET B 434 TRP B 435 0 SHEET 2 C 5 ASN B 557 ARG B 572 -1 O ASN B 557 N TRP B 435 SHEET 3 C 5 LEU B 578 ARG B 586 -1 O LEU B 583 N LYS B 567 SHEET 4 C 5 TYR B 480 THR B 484 -1 N PHE B 481 O LEU B 584 SHEET 5 C 5 VAL B 475 ASP B 476 -1 N VAL B 475 O THR B 482 SHEET 1 D 5 ILE B 454 ARG B 457 0 SHEET 2 D 5 GLY B 461 LEU B 467 -1 O TYR B 463 N HIS B 455 SHEET 3 D 5 VAL B 537 ASN B 542 1 O ARG B 538 N TYR B 463 SHEET 4 D 5 ASN B 557 ARG B 572 -1 O ASP B 560 N VAL B 539 SHEET 5 D 5 ALA B 526 GLU B 527 -1 N ALA B 526 O TYR B 568 LINK O3' DG D 406 P 5CM D 407 1555 1555 1.61 LINK O3' 5CM D 407 P DG D 408 1555 1555 1.60 LINK O3' DG F 406 P 5CM F 407 1555 1555 1.61 LINK O3' 5CM F 407 P DG F 408 1555 1555 1.61 CRYST1 50.084 62.416 113.447 90.00 98.92 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019966 0.000000 0.003134 0.00000 SCALE2 0.000000 0.016022 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008923 0.00000