PDB Short entry for 3FC2 HEADER TRANSFERASE 21-NOV-08 3FC2 TITLE PLK1 IN COMPLEX WITH BI6727 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PLK1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDIES 13-345; COMPND 5 SYNONYM: POLO-LIKE KINASE 1, PLK-1, SERINE/THREONINE-PROTEIN KINASE COMPND 6 13, STPK13; COMPND 7 EC: 2.7.11.21; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PLK1, PLK; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF21 KEYWDS PROTEIN KINASE, ATP-BINDING, CELL CYCLE, CELL DIVISION, KINASE, KEYWDS 2 MITOSIS, NUCLEOTIDE-BINDING, NUCLEUS, PHOSPHOPROTEIN, KEYWDS 3 SERINE/THREONINE-PROTEIN KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.BADER REVDAT 6 27-DEC-23 3FC2 1 REMARK REVDAT 5 10-NOV-21 3FC2 1 COMPND REMARK SEQADV HETNAM REVDAT 5 2 1 LINK REVDAT 4 11-APR-18 3FC2 1 COMPND REMARK HETNAM HETSYN REVDAT 3 13-JUL-11 3FC2 1 VERSN REVDAT 2 19-JAN-10 3FC2 1 REMARK REVDAT 1 12-MAY-09 3FC2 0 JRNL AUTH D.RUDOLPH,M.STEEGMAIER,M.HOFFMANN,M.GRAUERT,A.BAUM,J.QUANT, JRNL AUTH 2 C.HASLINGER,P.GARIN-CHESA,G.R.ADOLF JRNL TITL BI 6727, A POLO-LIKE KINASE INHIBITOR WITH IMPROVED JRNL TITL 2 PHARMACOKINETIC PROFILE AND BROAD ANTITUMOR ACTIVITY. JRNL REF CLIN.CANCER RES. V. 15 3094 2009 JRNL REFN ISSN 1078-0432 JRNL PMID 19383823 JRNL DOI 10.1158/1078-0432.CCR-08-2445 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 14942 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.500 REMARK 3 FREE R VALUE TEST SET COUNT : 374 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1050 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 27 REMARK 3 BIN FREE R VALUE : 0.2740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2373 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 83 REMARK 3 SOLVENT ATOMS : 74 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 42.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.35000 REMARK 3 B22 (A**2) : 2.35000 REMARK 3 B33 (A**2) : -3.52000 REMARK 3 B12 (A**2) : 1.17000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.342 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.233 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.183 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.676 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2512 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2379 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3379 ; 1.222 ; 2.006 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5529 ; 0.767 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 294 ; 5.862 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 110 ;34.442 ;22.455 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 450 ;15.825 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;18.317 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 368 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2694 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 522 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 490 ; 0.201 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2347 ; 0.189 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1200 ; 0.180 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1365 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 90 ; 0.135 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.031 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.083 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 38 ; 0.227 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.194 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1915 ; 1.850 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 589 ; 0.385 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2398 ; 2.353 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1225 ; 3.779 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 981 ; 5.285 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 37 A 104 REMARK 3 ORIGIN FOR THE GROUP (A): 48.5880 -18.7960 19.9080 REMARK 3 T TENSOR REMARK 3 T11: -0.0099 T22: 0.2366 REMARK 3 T33: 0.0562 T12: 0.0065 REMARK 3 T13: -0.0209 T23: 0.0765 REMARK 3 L TENSOR REMARK 3 L11: 3.4448 L22: 0.7330 REMARK 3 L33: 6.1771 L12: -0.1798 REMARK 3 L13: -1.4854 L23: -1.3792 REMARK 3 S TENSOR REMARK 3 S11: -0.0443 S12: -0.1322 S13: 0.0714 REMARK 3 S21: 0.0591 S22: -0.2011 S23: -0.2136 REMARK 3 S31: 0.0773 S32: 1.2351 S33: 0.2453 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 105 A 151 REMARK 3 ORIGIN FOR THE GROUP (A): 40.5010 -14.7350 8.6120 REMARK 3 T TENSOR REMARK 3 T11: -0.1357 T22: -0.0880 REMARK 3 T33: -0.1181 T12: 0.0007 REMARK 3 T13: 0.0135 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 3.0044 L22: 1.4685 REMARK 3 L33: 5.7275 L12: -0.9605 REMARK 3 L13: 1.4127 L23: -0.9955 REMARK 3 S TENSOR REMARK 3 S11: 0.0088 S12: -0.0213 S13: -0.0339 REMARK 3 S21: -0.1305 S22: -0.1827 S23: -0.2110 REMARK 3 S31: 0.1982 S32: 0.6732 S33: 0.1740 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 152 A 249 REMARK 3 ORIGIN FOR THE GROUP (A): 26.5500 -11.6170 10.6470 REMARK 3 T TENSOR REMARK 3 T11: -0.1404 T22: -0.1682 REMARK 3 T33: -0.1176 T12: -0.0204 REMARK 3 T13: -0.0403 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 2.0257 L22: 2.3301 REMARK 3 L33: 6.2776 L12: 0.3987 REMARK 3 L13: -0.4989 L23: -0.2542 REMARK 3 S TENSOR REMARK 3 S11: 0.0344 S12: -0.1011 S13: 0.0085 REMARK 3 S21: 0.0751 S22: -0.0806 S23: 0.1536 REMARK 3 S31: -0.1099 S32: -0.4256 S33: 0.0462 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 250 A 329 REMARK 3 ORIGIN FOR THE GROUP (A): 23.7580 -3.8820 0.6290 REMARK 3 T TENSOR REMARK 3 T11: 0.0199 T22: -0.0487 REMARK 3 T33: -0.0039 T12: 0.0426 REMARK 3 T13: -0.0533 T23: 0.0244 REMARK 3 L TENSOR REMARK 3 L11: 2.1523 L22: 1.2412 REMARK 3 L33: 3.9346 L12: 0.1127 REMARK 3 L13: 0.4156 L23: 1.4135 REMARK 3 S TENSOR REMARK 3 S11: 0.0299 S12: -0.0530 S13: 0.2151 REMARK 3 S21: -0.2671 S22: -0.0742 S23: 0.1054 REMARK 3 S31: -0.4202 S32: -0.2698 S33: 0.0444 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3FC2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1000050404. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14942 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.56800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 102.64600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.32300 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 51.32300 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 102.64600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -74.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 51.32300 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 11 REMARK 465 PRO A 12 REMARK 465 ALA A 13 REMARK 465 PRO A 14 REMARK 465 ALA A 15 REMARK 465 ASP A 16 REMARK 465 PRO A 17 REMARK 465 GLY A 18 REMARK 465 LYS A 19 REMARK 465 ALA A 20 REMARK 465 GLY A 21 REMARK 465 VAL A 22 REMARK 465 PRO A 23 REMARK 465 GLY A 24 REMARK 465 VAL A 25 REMARK 465 ALA A 26 REMARK 465 ALA A 27 REMARK 465 PRO A 28 REMARK 465 GLY A 29 REMARK 465 ALA A 30 REMARK 465 PRO A 31 REMARK 465 ALA A 32 REMARK 465 ALA A 33 REMARK 465 ALA A 34 REMARK 465 PRO A 35 REMARK 465 PRO A 36 REMARK 465 SER A 330 REMARK 465 SER A 331 REMARK 465 LEU A 332 REMARK 465 ASP A 333 REMARK 465 PRO A 334 REMARK 465 SER A 335 REMARK 465 ASN A 336 REMARK 465 ARG A 337 REMARK 465 LYS A 338 REMARK 465 PRO A 339 REMARK 465 LEU A 340 REMARK 465 THR A 341 REMARK 465 VAL A 342 REMARK 465 LEU A 343 REMARK 465 ASN A 344 REMARK 465 LYS A 345 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 76 -1.45 74.27 REMARK 500 ASP A 122 -163.46 -119.73 REMARK 500 ARG A 136 -122.39 60.79 REMARK 500 LYS A 146 -136.03 49.73 REMARK 500 ASP A 176 42.90 -154.93 REMARK 500 ASP A 194 83.29 47.79 REMARK 500 PHE A 195 30.51 -92.73 REMARK 500 SER A 229 -145.30 -157.12 REMARK 500 GLU A 267 79.97 -102.28 REMARK 500 THR A 320 -51.33 -127.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 IBI A 10 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 8 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ACT A 7 O REMARK 620 2 HIS A 93 NE2 112.8 REMARK 620 3 CYS A 212 SG 93.6 118.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IBI A 10 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 8 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 9 DBREF 3FC2 A 13 345 UNP P53350 PLK1_HUMAN 13 345 SEQADV 3FC2 GLY A 11 UNP P53350 EXPRESSION TAG SEQADV 3FC2 PRO A 12 UNP P53350 EXPRESSION TAG SEQADV 3FC2 VAL A 210 UNP P53350 THR 210 ENGINEERED MUTATION SEQRES 1 A 335 GLY PRO ALA PRO ALA ASP PRO GLY LYS ALA GLY VAL PRO SEQRES 2 A 335 GLY VAL ALA ALA PRO GLY ALA PRO ALA ALA ALA PRO PRO SEQRES 3 A 335 ALA LYS GLU ILE PRO GLU VAL LEU VAL ASP PRO ARG SER SEQRES 4 A 335 ARG ARG ARG TYR VAL ARG GLY ARG PHE LEU GLY LYS GLY SEQRES 5 A 335 GLY PHE ALA LYS CYS PHE GLU ILE SER ASP ALA ASP THR SEQRES 6 A 335 LYS GLU VAL PHE ALA GLY LYS ILE VAL PRO LYS SER LEU SEQRES 7 A 335 LEU LEU LYS PRO HIS GLN ARG GLU LYS MET SER MET GLU SEQRES 8 A 335 ILE SER ILE HIS ARG SER LEU ALA HIS GLN HIS VAL VAL SEQRES 9 A 335 GLY PHE HIS GLY PHE PHE GLU ASP ASN ASP PHE VAL PHE SEQRES 10 A 335 VAL VAL LEU GLU LEU CYS ARG ARG ARG SER LEU LEU GLU SEQRES 11 A 335 LEU HIS LYS ARG ARG LYS ALA LEU THR GLU PRO GLU ALA SEQRES 12 A 335 ARG TYR TYR LEU ARG GLN ILE VAL LEU GLY CYS GLN TYR SEQRES 13 A 335 LEU HIS ARG ASN ARG VAL ILE HIS ARG ASP LEU LYS LEU SEQRES 14 A 335 GLY ASN LEU PHE LEU ASN GLU ASP LEU GLU VAL LYS ILE SEQRES 15 A 335 GLY ASP PHE GLY LEU ALA THR LYS VAL GLU TYR ASP GLY SEQRES 16 A 335 GLU ARG LYS LYS VAL LEU CYS GLY THR PRO ASN TYR ILE SEQRES 17 A 335 ALA PRO GLU VAL LEU SER LYS LYS GLY HIS SER PHE GLU SEQRES 18 A 335 VAL ASP VAL TRP SER ILE GLY CYS ILE MET TYR THR LEU SEQRES 19 A 335 LEU VAL GLY LYS PRO PRO PHE GLU THR SER CYS LEU LYS SEQRES 20 A 335 GLU THR TYR LEU ARG ILE LYS LYS ASN GLU TYR SER ILE SEQRES 21 A 335 PRO LYS HIS ILE ASN PRO VAL ALA ALA SER LEU ILE GLN SEQRES 22 A 335 LYS MET LEU GLN THR ASP PRO THR ALA ARG PRO THR ILE SEQRES 23 A 335 ASN GLU LEU LEU ASN ASP GLU PHE PHE THR SER GLY TYR SEQRES 24 A 335 ILE PRO ALA ARG LEU PRO ILE THR CYS LEU THR ILE PRO SEQRES 25 A 335 PRO ARG PHE SER ILE ALA PRO SER SER LEU ASP PRO SER SEQRES 26 A 335 ASN ARG LYS PRO LEU THR VAL LEU ASN LYS HET IBI A 10 45 HET EDO A 1 4 HET EDO A 2 4 HET ACT A 3 4 HET EDO A 4 4 HET PEG A 5 7 HET EDO A 6 4 HET ACT A 7 4 HET ZN A 8 1 HET GOL A 9 6 HETNAM IBI N-{TRANS-4-[4-(CYCLOPROPYLMETHYL)PIPERAZIN-1- HETNAM 2 IBI YL]CYCLOHEXYL}-4-{[(7R)-7-ETHYL-5-METHYL-8-(1- HETNAM 3 IBI METHYLETHYL)-6-OXO-5,6,7,8-TETRAHYDROPTERIDIN-2- HETNAM 4 IBI YL]AMINO}-3-METHOXYBENZAMIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM ACT ACETATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETSYN IBI VOLASERTIB HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 IBI C34 H50 N8 O3 FORMUL 3 EDO 4(C2 H6 O2) FORMUL 5 ACT 2(C2 H3 O2 1-) FORMUL 7 PEG C4 H10 O3 FORMUL 10 ZN ZN 2+ FORMUL 11 GOL C3 H8 O3 FORMUL 12 HOH *74(H2 O) HELIX 1 1 SER A 87 LEU A 89 5 3 HELIX 2 2 LYS A 91 SER A 107 1 17 HELIX 3 3 SER A 137 LYS A 146 1 10 HELIX 4 4 THR A 149 ASN A 170 1 22 HELIX 5 5 LYS A 178 GLY A 180 5 3 HELIX 6 6 ALA A 219 SER A 224 1 6 HELIX 7 7 PHE A 230 GLY A 247 1 18 HELIX 8 8 CYS A 255 ASN A 266 1 12 HELIX 9 9 ASN A 275 LEU A 286 1 12 HELIX 10 10 ASP A 289 ARG A 293 5 5 HELIX 11 11 GLU A 298 ASN A 301 5 4 HELIX 12 12 ASP A 302 SER A 307 1 6 HELIX 13 13 PRO A 315 THR A 320 5 6 SHEET 1 A 6 VAL A 43 ASP A 46 0 SHEET 2 A 6 ARG A 51 GLY A 62 -1 O ARG A 51 N ASP A 46 SHEET 3 A 6 ALA A 65 ASP A 72 -1 O GLU A 69 N GLY A 56 SHEET 4 A 6 VAL A 78 PRO A 85 -1 O GLY A 81 N PHE A 68 SHEET 5 A 6 PHE A 125 GLU A 131 -1 O LEU A 130 N ALA A 80 SHEET 6 A 6 PHE A 116 GLU A 121 -1 N PHE A 120 O PHE A 127 SHEET 1 B 2 VAL A 172 ILE A 173 0 SHEET 2 B 2 THR A 199 LYS A 200 -1 O THR A 199 N ILE A 173 SHEET 1 C 2 LEU A 182 LEU A 184 0 SHEET 2 C 2 VAL A 190 ILE A 192 -1 O LYS A 191 N PHE A 183 LINK O ACT A 7 ZN ZN A 8 1555 1555 2.13 LINK ZN ZN A 8 NE2 HIS A 93 1555 1555 2.03 LINK ZN ZN A 8 SG CYS A 212 1555 1555 2.20 SITE 1 AC1 16 EDO A 2 GOL A 9 ARG A 57 PHE A 58 SITE 2 AC1 16 LEU A 59 CYS A 67 GLU A 69 VAL A 114 SITE 3 AC1 16 LEU A 130 GLU A 131 CYS A 133 ARG A 134 SITE 4 AC1 16 ARG A 136 PHE A 183 HOH A 388 HOH A 419 SITE 1 AC2 2 LEU A 319 HOH A 395 SITE 1 AC3 5 GOL A 9 IBI A 10 LYS A 178 GLY A 180 SITE 2 AC3 5 ASN A 181 SITE 1 AC4 5 PHE A 64 LYS A 82 MET A 98 GLU A 101 SITE 2 AC4 5 HOH A 408 SITE 1 AC5 4 HIS A 110 LEU A 162 GLN A 165 HOH A 362 SITE 1 AC6 5 TYR A 166 ARG A 169 ASN A 170 HOH A 358 SITE 2 AC6 5 HOH A 362 SITE 1 AC7 2 ASN A 216 PRO A 249 SITE 1 AC8 7 ZN A 8 HIS A 93 GLN A 94 LYS A 97 SITE 2 AC8 7 CYS A 212 CYS A 255 LEU A 256 SITE 1 AC9 4 ACT A 7 HIS A 93 CYS A 212 CYS A 255 SITE 1 BC1 7 EDO A 2 IBI A 10 ARG A 136 GLU A 140 SITE 2 BC1 7 GLY A 180 PHE A 183 HOH A 418 CRYST1 66.616 66.616 153.969 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015011 0.008667 0.000000 0.00000 SCALE2 0.000000 0.017334 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006495 0.00000