PDB Short entry for 3FID HEADER MEMBRANE PROTEIN 11-DEC-08 3FID TITLE LPXR FROM SALMONELLA TYPHIMURIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE OUTER MEMBRANE PROTEIN (LPXR); COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: MATURE DOMAIN, UNP RESIDUES 24-319; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 3 ORGANISM_TAXID: 602; SOURCE 4 STRAIN: STRAIN LT2; SOURCE 5 GENE: LPXR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21STAR(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS LIPOPOLYSACCHARIDE-MODIFYING OUTER MEMBRANE ENZYME, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.RUTTEN,P.GROS REVDAT 5 20-MAR-24 3FID 1 REMARK REVDAT 4 01-NOV-17 3FID 1 REMARK REVDAT 3 13-JUL-11 3FID 1 VERSN REVDAT 2 07-APR-09 3FID 1 JRNL REVDAT 1 10-FEB-09 3FID 0 JRNL AUTH L.RUTTEN,J.-P.B.A.MANNIE,C.M.STEAD,C.R.H.RAETZ,C.M.REYNOLDS, JRNL AUTH 2 A.M.J.J.BONVIN,J.P.TOMMASSEN,M.R.EGMOND,M.S.TRENT,P.GROS JRNL TITL ACTIVE-SITE ARCHITECTURE AND CATALYTIC MECHANISM OF THE JRNL TITL 2 LIPID A DEACYLASE LPXR OF SALMONELLA TYPHIMURIUM JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 1960 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19174515 JRNL DOI 10.1073/PNAS.0813064106 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 62825 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3357 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4577 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE SET COUNT : 244 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4588 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 187 REMARK 3 SOLVENT ATOMS : 414 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.03000 REMARK 3 B22 (A**2) : -0.68000 REMARK 3 B33 (A**2) : -0.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.129 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.127 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.082 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.714 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4852 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6516 ; 1.536 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 590 ; 7.260 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 228 ;35.843 ;23.947 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 728 ;12.866 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;17.098 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 684 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3666 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2116 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3239 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 387 ; 0.138 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 11 ; 0.185 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 37 ; 0.172 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.232 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 1 ; 0.061 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3011 ; 0.890 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4646 ; 1.407 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2124 ; 2.374 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1870 ; 3.432 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3FID COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-DEC-08. REMARK 100 THE DEPOSITION ID IS D_1000050627. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAY-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.931 REMARK 200 MONOCHROMATOR : DIAMOND (111), GE(220) REMARK 200 OPTICS : TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66190 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 48.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.90 REMARK 200 R MERGE (I) : 0.15900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 15.00 REMARK 200 R MERGE FOR SHELL (I) : 0.80500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD AND DMMULTI USING REMARK 200 P21212 AND P2 CRYSTAL REMARK 200 SOFTWARE USED: SHELXCD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% PEG 6000 (W/V), 10% GLYCEROL REMARK 280 (V/V), 50MM TRIS-HCL, 5MM ZINC CHLORIDE, PH 8.5, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 53.46500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.82500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 53.46500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 63.82500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 283 O HOH B 367 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 521 O HOH B 361 4556 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 256 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 77 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 LEU B 187 CA - CB - CG ANGL. DEV. = 16.3 DEGREES REMARK 500 ARG B 256 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 256 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 264 123.07 -29.74 REMARK 500 SER A 277 120.51 -36.92 REMARK 500 SER B 264 127.14 -35.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 CXE A 304 REMARK 610 CXE A 305 REMARK 610 CXE A 306 REMARK 610 CXE B 303 REMARK 610 CXE B 305 REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 CXE B 304 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 297 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 298 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 299 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CXE A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CXE A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CXE A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CXE A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 297 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 298 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 299 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CXE B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CXE B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CXE B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CXE B 306 DBREF 3FID A 1 296 UNP Q8ZPT3 Q8ZPT3_SALTY 24 319 DBREF 3FID B 1 296 UNP Q8ZPT3 Q8ZPT3_SALTY 24 319 SEQRES 1 A 296 SER SER LEU ALA ILE SER VAL ALA ASN ASP ASP ALA GLY SEQRES 2 A 296 ILE PHE GLN PRO SER LEU ASN ALA LEU TYR GLY HIS PRO SEQRES 3 A 296 ALA ALA ASP ARG GLY ASP TYR THR ALA GLY LEU PHE LEU SEQRES 4 A 296 GLY TYR SER HIS ASP LEU THR ASP ALA SER GLN LEU SER SEQRES 5 A 296 PHE HIS ILE ALA GLN ASP ILE TYR SER PRO SER GLY ALA SEQRES 6 A 296 ASN LYS ARG LYS PRO GLU ALA VAL LYS GLY ASP ARG ALA SEQRES 7 A 296 PHE SER ALA PHE LEU HIS THR GLY LEU GLU TRP ASN SER SEQRES 8 A 296 LEU ALA THR ASN TRP LEU ARG TYR ARG LEU GLY THR ASP SEQRES 9 A 296 ILE GLY VAL ILE GLY PRO ASP ALA GLY GLY GLN GLU VAL SEQRES 10 A 296 GLN ASN ARG ALA HIS ARG ILE ILE GLY ALA GLU LYS TYR SEQRES 11 A 296 PRO ALA TRP GLN ASP GLN ILE GLU ASN ARG TYR GLY TYR SEQRES 12 A 296 THR ALA LYS GLY MET VAL SER LEU THR PRO ALA ILE ASP SEQRES 13 A 296 ILE LEU GLY VAL ASN VAL GLY PHE TYR PRO GLU VAL SER SEQRES 14 A 296 ALA VAL GLY GLY ASN LEU PHE GLN TYR LEU GLY TYR GLY SEQRES 15 A 296 ALA THR VAL ALA LEU GLY ASN ASP LYS THR PHE ASN SER SEQRES 16 A 296 ASP ASN GLY PHE GLY LEU LEU SER ARG ARG GLY LEU ILE SEQRES 17 A 296 HIS THR GLN LYS GLU GLY LEU ILE TYR LYS VAL PHE ALA SEQRES 18 A 296 GLY VAL GLU ARG ARG GLU VAL ASP LYS ASN TYR THR LEU SEQRES 19 A 296 GLN GLY LYS THR LEU GLN THR LYS MET GLU THR VAL ASP SEQRES 20 A 296 ILE ASN LYS THR VAL ASP GLU TYR ARG VAL GLY ALA THR SEQRES 21 A 296 ILE GLY TYR SER PRO VAL ALA PHE SER LEU SER LEU ASN SEQRES 22 A 296 LYS VAL THR SER GLU PHE ARG THR GLY ASP ASP TYR SER SEQRES 23 A 296 TYR ILE ASN GLY ASP ILE THR PHE PHE PHE SEQRES 1 B 296 SER SER LEU ALA ILE SER VAL ALA ASN ASP ASP ALA GLY SEQRES 2 B 296 ILE PHE GLN PRO SER LEU ASN ALA LEU TYR GLY HIS PRO SEQRES 3 B 296 ALA ALA ASP ARG GLY ASP TYR THR ALA GLY LEU PHE LEU SEQRES 4 B 296 GLY TYR SER HIS ASP LEU THR ASP ALA SER GLN LEU SER SEQRES 5 B 296 PHE HIS ILE ALA GLN ASP ILE TYR SER PRO SER GLY ALA SEQRES 6 B 296 ASN LYS ARG LYS PRO GLU ALA VAL LYS GLY ASP ARG ALA SEQRES 7 B 296 PHE SER ALA PHE LEU HIS THR GLY LEU GLU TRP ASN SER SEQRES 8 B 296 LEU ALA THR ASN TRP LEU ARG TYR ARG LEU GLY THR ASP SEQRES 9 B 296 ILE GLY VAL ILE GLY PRO ASP ALA GLY GLY GLN GLU VAL SEQRES 10 B 296 GLN ASN ARG ALA HIS ARG ILE ILE GLY ALA GLU LYS TYR SEQRES 11 B 296 PRO ALA TRP GLN ASP GLN ILE GLU ASN ARG TYR GLY TYR SEQRES 12 B 296 THR ALA LYS GLY MET VAL SER LEU THR PRO ALA ILE ASP SEQRES 13 B 296 ILE LEU GLY VAL ASN VAL GLY PHE TYR PRO GLU VAL SER SEQRES 14 B 296 ALA VAL GLY GLY ASN LEU PHE GLN TYR LEU GLY TYR GLY SEQRES 15 B 296 ALA THR VAL ALA LEU GLY ASN ASP LYS THR PHE ASN SER SEQRES 16 B 296 ASP ASN GLY PHE GLY LEU LEU SER ARG ARG GLY LEU ILE SEQRES 17 B 296 HIS THR GLN LYS GLU GLY LEU ILE TYR LYS VAL PHE ALA SEQRES 18 B 296 GLY VAL GLU ARG ARG GLU VAL ASP LYS ASN TYR THR LEU SEQRES 19 B 296 GLN GLY LYS THR LEU GLN THR LYS MET GLU THR VAL ASP SEQRES 20 B 296 ILE ASN LYS THR VAL ASP GLU TYR ARG VAL GLY ALA THR SEQRES 21 B 296 ILE GLY TYR SER PRO VAL ALA PHE SER LEU SER LEU ASN SEQRES 22 B 296 LYS VAL THR SER GLU PHE ARG THR GLY ASP ASP TYR SER SEQRES 23 B 296 TYR ILE ASN GLY ASP ILE THR PHE PHE PHE HET ZN A 297 1 HET ZN A 298 1 HET ZN A 299 1 HET ZN A 300 1 HET ZN A 301 1 HET GOL A 302 6 HET GOL A 303 6 HET CXE A 304 13 HET CXE A 305 20 HET CXE A 306 15 HET CXE A 307 26 HET ZN B 297 1 HET ZN B 298 1 HET ZN B 299 1 HET ZN B 300 1 HET GOL B 301 6 HET GOL B 302 6 HET CXE B 303 13 HET CXE B 304 26 HET CXE B 305 15 HET CXE B 306 26 HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETNAM CXE PENTAETHYLENE GLYCOL MONODECYL ETHER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ZN 9(ZN 2+) FORMUL 8 GOL 4(C3 H8 O3) FORMUL 10 CXE 8(C20 H42 O6) FORMUL 24 HOH *414(H2 O) HELIX 1 1 ALA A 12 ILE A 14 5 3 HELIX 2 2 PHE A 15 GLY A 24 1 10 HELIX 3 3 GLY A 24 ARG A 30 1 7 HELIX 4 4 SER A 63 LYS A 69 5 7 HELIX 5 5 PRO A 110 ALA A 112 5 3 HELIX 6 6 GLY A 113 GLY A 126 1 14 HELIX 7 7 TYR A 130 GLN A 136 5 7 HELIX 8 8 ASP A 190 SER A 195 1 6 HELIX 9 9 PHE A 199 SER A 203 5 5 HELIX 10 10 TYR A 232 GLY A 236 1 5 HELIX 11 11 ALA B 12 ILE B 14 5 3 HELIX 12 12 PHE B 15 GLY B 24 1 10 HELIX 13 13 GLY B 24 ARG B 30 1 7 HELIX 14 14 SER B 63 LYS B 69 5 7 HELIX 15 15 PRO B 110 ALA B 112 5 3 HELIX 16 16 GLY B 113 ILE B 125 1 13 HELIX 17 17 TYR B 130 GLN B 136 5 7 HELIX 18 18 ASP B 190 SER B 195 1 6 HELIX 19 19 PHE B 199 SER B 203 5 5 HELIX 20 20 TYR B 232 GLY B 236 1 5 SHEET 1 A14 ALA A 154 ILE A 157 0 SHEET 2 A14 VAL A 160 GLY A 173 -1 O VAL A 160 N ILE A 157 SHEET 3 A14 PHE A 176 GLY A 188 -1 O THR A 184 N TYR A 165 SHEET 4 A14 LEU A 215 ASN A 231 -1 O ARG A 225 N TYR A 181 SHEET 5 A14 THR A 251 TYR A 263 -1 O VAL A 252 N ARG A 226 SHEET 6 A14 VAL A 266 VAL A 275 -1 O LEU A 272 N VAL A 257 SHEET 7 A14 TYR A 285 PHE A 295 -1 O TYR A 287 N ASN A 273 SHEET 8 A14 SER A 2 ASN A 9 -1 N LEU A 3 O PHE A 294 SHEET 9 A14 TYR A 33 ASP A 44 -1 O SER A 42 N SER A 2 SHEET 10 A14 SER A 49 TYR A 60 -1 O PHE A 53 N TYR A 41 SHEET 11 A14 SER A 80 THR A 94 -1 O ASN A 90 N GLN A 50 SHEET 12 A14 LEU A 97 ILE A 108 -1 O LEU A 101 N TRP A 89 SHEET 13 A14 ARG A 140 LEU A 151 -1 O GLY A 142 N GLY A 106 SHEET 14 A14 VAL A 160 GLY A 173 -1 O ALA A 170 N GLY A 147 SHEET 1 B14 ALA B 154 ILE B 157 0 SHEET 2 B14 VAL B 160 GLY B 173 -1 O VAL B 160 N ILE B 157 SHEET 3 B14 PHE B 176 GLY B 188 -1 O GLY B 180 N SER B 169 SHEET 4 B14 LEU B 215 ASN B 231 -1 O GLU B 227 N LEU B 179 SHEET 5 B14 THR B 251 TYR B 263 -1 O VAL B 252 N ARG B 226 SHEET 6 B14 VAL B 266 VAL B 275 -1 O LEU B 272 N VAL B 257 SHEET 7 B14 TYR B 285 PHE B 295 -1 O THR B 293 N ALA B 267 SHEET 8 B14 SER B 2 ASN B 9 -1 N LEU B 3 O PHE B 294 SHEET 9 B14 TYR B 33 THR B 46 -1 O SER B 42 N SER B 2 SHEET 10 B14 SER B 49 TYR B 60 -1 O PHE B 53 N TYR B 41 SHEET 11 B14 SER B 80 THR B 94 -1 O SER B 80 N TYR B 60 SHEET 12 B14 LEU B 97 ILE B 108 -1 O LEU B 101 N TRP B 89 SHEET 13 B14 ARG B 140 LEU B 151 -1 O LYS B 146 N GLY B 102 SHEET 14 B14 VAL B 160 GLY B 173 -1 O VAL B 168 N VAL B 149 CISPEP 1 SER A 264 PRO A 265 0 3.50 CISPEP 2 SER B 264 PRO B 265 0 6.14 SITE 1 AC1 5 SER A 1 ASP A 44 PHE A 296 ZN A 298 SITE 2 AC1 5 HOH A 475 SITE 1 AC2 5 SER A 1 TYR A 41 HIS A 43 ZN A 297 SITE 2 AC2 5 HOH B 431 SITE 1 AC3 4 HIS A 54 HIS A 84 ASP A 104 HOH A 338 SITE 1 AC4 4 HIS A 25 ASP A 29 HIS B 25 ASP B 29 SITE 1 AC5 4 ASN A 9 ASP A 10 THR A 34 GOL A 303 SITE 1 AC6 9 TYR A 60 ARG A 77 PHE A 176 ARG A 226 SITE 2 AC6 9 ASN A 231 THR A 233 GLU A 278 HOH A 412 SITE 3 AC6 9 HOH A 466 SITE 1 AC7 6 ASN A 9 ASP A 10 THR A 34 ZN A 301 SITE 2 AC7 6 HOH A 331 HOH A 376 SITE 1 AC8 1 SER A 18 SITE 1 AC9 2 SER A 18 VAL A 219 SITE 1 BC1 4 LEU A 22 TYR A 23 GLY A 222 TYR A 255 SITE 1 BC2 5 LEU A 151 GLU A 167 GLY A 182 VAL A 223 SITE 2 BC2 5 ARG A 225 SITE 1 BC3 3 SER B 1 ASP B 44 ZN B 298 SITE 1 BC4 5 SER B 1 TYR B 41 HIS B 43 ZN B 297 SITE 2 BC4 5 HOH B 431 SITE 1 BC5 4 HIS B 54 HIS B 84 ASP B 104 HOH B 327 SITE 1 BC6 4 ASN B 9 ASP B 10 THR B 34 GOL B 302 SITE 1 BC7 10 TYR B 60 ARG B 77 LEU B 201 ARG B 226 SITE 2 BC7 10 ASN B 231 THR B 233 GLU B 278 HOH B 416 SITE 3 BC7 10 HOH B 426 HOH B 493 SITE 1 BC8 6 ASN B 9 ASP B 10 THR B 34 ZN B 300 SITE 2 BC8 6 HOH B 482 HOH B 553 SITE 1 BC9 1 SER B 18 SITE 1 CC1 2 ILE A 157 SER B 18 SITE 1 CC2 2 LEU B 22 LYS B 274 SITE 1 CC3 7 PRO B 166 GLU B 167 VAL B 168 GLY B 182 SITE 2 CC3 7 VAL B 223 ARG B 225 ASP B 253 CRYST1 106.930 127.650 60.660 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009352 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007834 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016485 0.00000