PDB Short entry for 3G5V HEADER IMMUNE SYSTEM 05-FEB-09 3G5V TITLE ANTIBODIES SPECIFICALLY TARGETING A LOCALLY MISFOLDED REGION OF TUMOR TITLE 2 ASSOCIATED EGFR CAVEAT 3G5V CHIRALITY ERROR AT CA CENTER OF ASP B 210. COMPND MOL_ID: 1; COMPND 2 MOLECULE: 806 LIGHT CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 808 HEAVY CHAIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: EPIDERMAL GROWTH FACTOR RECEPTOR PEPTIDE; COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: MOUSE; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 8 EXPRESSION_SYSTEM_CELL: HYBRIDOMA CELL; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: MOUSE; SOURCE 12 ORGANISM_TAXID: 10090; SOURCE 13 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 14 EXPRESSION_SYSTEM_COMMON: MOUSE; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 16 EXPRESSION_SYSTEM_CELL: HYBRIDOMA CELL; SOURCE 17 MOL_ID: 3; SOURCE 18 SYNTHETIC: YES; SOURCE 19 OTHER_DETAILS: PEPTIDE SYNTHESIS KEYWDS ANTIBODY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR T.P.J.GARRETT,A.W.BURGESS,T.HUYTON,Y.XU REVDAT 3 12-OCT-11 3G5V 1 COMPND REVDAT 2 13-JUL-11 3G5V 1 VERSN REVDAT 1 09-FEB-10 3G5V 0 JRNL AUTH T.P.J.GARRETT,A.W.BURGESS,H.K.GAN,R.B.LUWOR,G.CARTWRIGHT, JRNL AUTH 2 F.WALKER,S.G.ORCHARD,A.H.A.CLAYTON,E.C.NICE,J.ROTHACKER, JRNL AUTH 3 B.CATIMEL,W.K.CAVENEE,L.J.OLD,E.STOCKERT,G.RITTER,T.E.ADAMS, JRNL AUTH 4 P.A.HOYNE,D.WITTRUP,G.CHAO,J.R.COCHRAN,C.LUO,M.LOU,T.HUYTON, JRNL AUTH 5 Y.XU,W.D.FAIRLIE,S.YAO,A.M.SCOTT,T.G.JOHNS JRNL TITL ANTIBODIES SPECIFICALLY TARGETING A LOCALLY MISFOLDED REGION JRNL TITL 2 OF TUMOR ASSOCIATED EGFR JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 5082 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19289842 JRNL DOI 10.1073/PNAS.0811559106 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 26284 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1389 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1494 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.2920 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.3860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3285 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 199 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.42000 REMARK 3 B22 (A**2) : -0.26000 REMARK 3 B33 (A**2) : -2.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.56000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.247 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.209 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.185 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.044 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.899 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3357 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4566 ; 1.115 ; 1.948 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 428 ; 6.433 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 134 ;33.239 ;24.552 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 514 ;15.147 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;13.802 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 507 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2545 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1416 ; 0.197 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2228 ; 0.298 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 216 ; 0.117 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 41 ; 0.155 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.167 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2206 ; 0.311 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3449 ; 0.519 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1355 ; 0.796 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1114 ; 1.200 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 108 REMARK 3 ORIGIN FOR THE GROUP (A): 19.6075 13.5085 7.9564 REMARK 3 T TENSOR REMARK 3 T11: -0.1935 T22: -0.2429 REMARK 3 T33: -0.1778 T12: -0.0526 REMARK 3 T13: 0.0197 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 2.2386 L22: 4.1916 REMARK 3 L33: 5.5780 L12: -1.4087 REMARK 3 L13: -0.0594 L23: 0.8495 REMARK 3 S TENSOR REMARK 3 S11: -0.1549 S12: -0.1391 S13: -0.0098 REMARK 3 S21: 0.3324 S22: 0.1591 S23: 0.0355 REMARK 3 S31: -0.4784 S32: 0.0360 S33: -0.0042 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 109 A 212 REMARK 3 ORIGIN FOR THE GROUP (A): 8.2119 -1.7236 40.6997 REMARK 3 T TENSOR REMARK 3 T11: -0.1661 T22: 0.1567 REMARK 3 T33: -0.1274 T12: 0.0218 REMARK 3 T13: 0.0630 T23: 0.0766 REMARK 3 L TENSOR REMARK 3 L11: 1.0844 L22: 5.0017 REMARK 3 L33: 14.4080 L12: 0.9729 REMARK 3 L13: -1.1227 L23: -6.1979 REMARK 3 S TENSOR REMARK 3 S11: 0.1423 S12: 0.1943 S13: 0.1699 REMARK 3 S21: 0.1933 S22: 0.4861 S23: 0.1181 REMARK 3 S31: -0.3868 S32: -1.5761 S33: -0.6284 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 117 REMARK 3 ORIGIN FOR THE GROUP (A): 16.7538 -6.9658 1.2004 REMARK 3 T TENSOR REMARK 3 T11: -0.0921 T22: -0.2818 REMARK 3 T33: -0.2126 T12: -0.0662 REMARK 3 T13: -0.0045 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: 1.8723 L22: 3.5703 REMARK 3 L33: 6.8466 L12: 0.1714 REMARK 3 L13: 0.7213 L23: 0.9357 REMARK 3 S TENSOR REMARK 3 S11: 0.1514 S12: -0.0526 S13: -0.0436 REMARK 3 S21: 0.5039 S22: 0.0641 S23: -0.0599 REMARK 3 S31: 0.8628 S32: -0.1784 S33: -0.2154 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 118 B 213 REMARK 3 ORIGIN FOR THE GROUP (A): 0.2250 -8.1019 27.7182 REMARK 3 T TENSOR REMARK 3 T11: 0.0476 T22: 0.9624 REMARK 3 T33: -0.0666 T12: -0.4163 REMARK 3 T13: -0.1275 T23: 0.2653 REMARK 3 L TENSOR REMARK 3 L11: 1.9868 L22: 7.8138 REMARK 3 L33: 9.8353 L12: -0.0130 REMARK 3 L13: -1.0959 L23: 0.7950 REMARK 3 S TENSOR REMARK 3 S11: -0.0087 S12: -0.1015 S13: -0.1413 REMARK 3 S21: -0.4999 S22: 0.3882 S23: 0.9504 REMARK 3 S31: 1.1858 S32: -2.8785 S33: -0.3795 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 287 C 302 REMARK 3 ORIGIN FOR THE GROUP (A): 25.0152 11.1485 -11.4584 REMARK 3 T TENSOR REMARK 3 T11: 0.0228 T22: -0.0134 REMARK 3 T33: -0.0800 T12: -0.1417 REMARK 3 T13: 0.1115 T23: -0.0303 REMARK 3 L TENSOR REMARK 3 L11: 6.0311 L22: 16.8496 REMARK 3 L33: 9.2349 L12: 9.0595 REMARK 3 L13: 0.4059 L23: -3.6129 REMARK 3 S TENSOR REMARK 3 S11: -0.5562 S12: 0.6696 S13: 0.1062 REMARK 3 S21: -0.9704 S22: 0.6148 S23: -0.8586 REMARK 3 S31: -1.1279 S32: 0.9224 S33: -0.0587 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.11 REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3G5V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-MAR-09. REMARK 100 THE RCSB ID CODE IS RCSB051461. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27692 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.28200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM ACETATE, 16-18% PEG5000 REMARK 280 MONOMETHYLETHER, EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.58050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 130 REMARK 465 CYS B 131 REMARK 465 GLY B 132 REMARK 465 ASP B 133 REMARK 465 THR B 134 REMARK 465 THR B 135 REMARK 465 GLY B 136 REMARK 465 SER B 137 REMARK 465 SER B 138 REMARK 465 VAL B 139 REMARK 465 SER B 164 REMARK 465 SER B 165 REMARK 465 PRO B 192 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ILE A 106 CD1 REMARK 480 LYS A 169 CB CG CD CE NZ REMARK 480 ASP A 170 CB CG OD1 OD2 REMARK 480 THR A 202 CB OG1 CG2 REMARK 480 SER A 203 CB OG REMARK 480 LYS B 118 CB CG CD CE NZ REMARK 480 LEU B 162 CB CG CD1 CD2 REMARK 480 GLU B 194 CG CD OE1 OE2 REMARK 480 THR B 197 CG2 REMARK 480 SER B 199 CB OG REMARK 480 VAL B 209 CB CG1 CG2 REMARK 480 ASP B 210 CB CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ILE A 106 CG1 ILE A 106 CD1 -0.533 REMARK 500 SER A 203 CA SER A 203 CB -0.192 REMARK 500 LEU B 162 CA LEU B 162 CB -0.199 REMARK 500 GLU B 194 CB GLU B 194 CG -0.180 REMARK 500 SER B 199 CA SER B 199 CB -0.180 REMARK 500 ASP B 210 CA ASP B 210 CB -0.256 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 106 CB - CG1 - CD1 ANGL. DEV. = 26.5 DEGREES REMARK 500 LYS A 169 CB - CA - C ANGL. DEV. = -16.0 DEGREES REMARK 500 ASP A 170 N - CA - CB ANGL. DEV. = 18.7 DEGREES REMARK 500 THR A 202 CB - CA - C ANGL. DEV. = 19.2 DEGREES REMARK 500 THR A 202 N - CA - CB ANGL. DEV. = -12.4 DEGREES REMARK 500 THR A 202 CA - CB - OG1 ANGL. DEV. = -12.9 DEGREES REMARK 500 SER A 203 CB - CA - C ANGL. DEV. = 18.6 DEGREES REMARK 500 LYS B 118 CB - CA - C ANGL. DEV. = 36.2 DEGREES REMARK 500 LYS B 118 N - CA - CB ANGL. DEV. = -20.0 DEGREES REMARK 500 LEU B 162 CB - CA - C ANGL. DEV. = 20.5 DEGREES REMARK 500 SER B 199 CB - CA - C ANGL. DEV. = 24.0 DEGREES REMARK 500 VAL B 209 CB - CA - C ANGL. DEV. = 13.0 DEGREES REMARK 500 VAL B 209 CA - CB - CG2 ANGL. DEV. = 13.2 DEGREES REMARK 500 ASP B 210 N - CA - CB ANGL. DEV. = 17.1 DEGREES REMARK 500 ASP B 210 CA - CB - CG ANGL. DEV. = -23.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 52 -28.30 -140.05 REMARK 500 SER A 77 70.53 45.59 REMARK 500 LYS A 199 6.86 -64.12 REMARK 500 SER B 15 -15.99 82.45 REMARK 500 PHE B 33 165.79 78.46 REMARK 500 ASN B 44 1.30 81.08 REMARK 500 SER B 123 65.64 -107.76 REMARK 500 SER B 152 45.29 171.23 REMARK 500 SER B 188 36.27 -69.40 REMARK 500 THR B 190 -152.41 -132.52 REMARK 500 SER B 206 8.45 56.59 REMARK 500 VAL B 209 101.18 -54.33 REMARK 500 LYS B 211 125.02 132.24 REMARK 500 LYS B 212 92.88 109.31 REMARK 500 ASP C 290 -166.70 -116.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASP A 170 19.9 L L OUTSIDE RANGE REMARK 500 VAL B 209 17.8 L L OUTSIDE RANGE REMARK 500 ASP B 210 -7.2 L D EXPECTING SP3 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 322 DISTANCE = 5.46 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT C 702 REMARK 999 REMARK 999 SEQUENCE REMARK 999 A SEQUENCE DATABASE REFERENCE FOR THIS PROTEIN REMARK 999 DOES NOT CURRENTLY EXIST. DBREF 3G5V A 1 212 PDB 3G5V 3G5V 1 212 DBREF 3G5V B 1 213 PDB 3G5V 3G5V 1 213 DBREF 3G5V C 287 302 PDB 3G5V 3G5V 287 302 SEQRES 1 A 212 ASP ILE LEU MET THR GLN SER PRO SER SER MET SER VAL SEQRES 2 A 212 SER LEU GLY ASP THR VAL SER ILE THR CYS HIS SER SER SEQRES 3 A 212 GLN ASP ILE ASN SER ASN ILE GLY TRP LEU GLN GLN LYS SEQRES 4 A 212 PRO GLY LYS SER PHE LYS GLY LEU ILE TYR HIS GLY THR SEQRES 5 A 212 ASN LEU ASP ASP GLU VAL PRO SER ARG PHE SER GLY SER SEQRES 6 A 212 GLY SER GLY ALA ASP TYR SER LEU THR ILE SER SER LEU SEQRES 7 A 212 GLU SER GLU ASP PHE ALA ASP TYR TYR CYS VAL GLN TYR SEQRES 8 A 212 ALA GLN PHE PRO TRP THR PHE GLY GLY GLY THR LYS LEU SEQRES 9 A 212 GLU ILE LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE SEQRES 10 A 212 PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SEQRES 11 A 212 SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP SEQRES 12 A 212 ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN SEQRES 13 A 212 ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS SEQRES 14 A 212 ASP SER THR TYR SER MET SER SER THR LEU THR LEU THR SEQRES 15 A 212 LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU SEQRES 16 A 212 ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER SEQRES 17 A 212 PHE ASN ARG ASN SEQRES 1 B 213 ASP VAL GLN LEU GLN GLU SER GLY PRO SER LEU VAL LYS SEQRES 2 B 213 PRO SER GLN SER LEU SER LEU THR CYS THR VAL THR GLY SEQRES 3 B 213 TYR SER ILE THR SER ASP PHE ALA TRP ASN TRP ILE ARG SEQRES 4 B 213 GLN PHE PRO GLY ASN LYS LEU GLU TRP MET GLY TYR ILE SEQRES 5 B 213 SER TYR SER GLY ASN THR ARG TYR ASN PRO SER LEU LYS SEQRES 6 B 213 SER ARG ILE SER ILE THR ARG ASP THR SER SER ASN GLN SEQRES 7 B 213 PHE PHE LEU GLN LEU ASN SER VAL THR ILE GLU ASP THR SEQRES 8 B 213 ALA THR TYR TYR CYS VAL THR ALA GLY ARG GLY PHE PRO SEQRES 9 B 213 TYR TRP GLY GLN GLY THR LEU VAL THR VAL SER ALA ALA SEQRES 10 B 213 LYS THR THR PRO PRO SER VAL TYR PRO LEU ALA PRO GLY SEQRES 11 B 213 CYS GLY ASP THR THR GLY SER SER VAL THR LEU GLY CYS SEQRES 12 B 213 LEU VAL LYS GLY TYR PHE PRO GLU SER VAL THR VAL THR SEQRES 13 B 213 ALA ASN SER GLY SER LEU SER SER SER VAL HIS THR PHE SEQRES 14 B 213 PRO ALA LEU LEU GLN SER ASP LEU TYR THR MET SER SER SEQRES 15 B 213 SER VAL THR VAL PRO SER SER THR TRP PRO SER GLU THR SEQRES 16 B 213 VAL THR CYS SER VAL ALA HIS PRO ALA SER SER THR THR SEQRES 17 B 213 VAL ASP LYS LYS ALA SEQRES 1 C 16 CYS GLY ALA ASP SER TYR GLU MET GLU GLU ASP GLY VAL SEQRES 2 C 16 ARG LYS CYS HET ACT A 400 4 HET GOL B 500 6 HET ACT A 600 4 HET FMT B 700 3 HET FMT B 701 3 HET FMT C 702 3 HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETNAM FMT FORMIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 ACT 2(C2 H3 O2 1-) FORMUL 5 GOL C3 H8 O3 FORMUL 7 FMT 3(C H2 O2) FORMUL 10 HOH *199(H2 O) HELIX 1 1 GLU A 79 PHE A 83 5 5 HELIX 2 2 SER A 121 GLY A 128 1 8 HELIX 3 3 LYS A 183 GLU A 187 1 5 HELIX 4 4 LEU B 64 SER B 66 5 3 HELIX 5 5 THR B 87 THR B 91 5 5 HELIX 6 6 HIS B 202 SER B 206 5 5 SHEET 1 A 4 MET A 4 SER A 7 0 SHEET 2 A 4 VAL A 19 SER A 25 -1 O HIS A 24 N THR A 5 SHEET 3 A 4 ASP A 70 ILE A 75 -1 O LEU A 73 N ILE A 21 SHEET 4 A 4 PHE A 62 SER A 67 -1 N SER A 65 O SER A 72 SHEET 1 B 6 SER A 10 VAL A 13 0 SHEET 2 B 6 THR A 102 ILE A 106 1 O GLU A 105 N MET A 11 SHEET 3 B 6 ASP A 85 GLN A 90 -1 N TYR A 86 O THR A 102 SHEET 4 B 6 ILE A 33 GLN A 38 -1 N GLN A 38 O ASP A 85 SHEET 5 B 6 PHE A 44 TYR A 49 -1 O LEU A 47 N TRP A 35 SHEET 6 B 6 ASN A 53 LEU A 54 -1 O ASN A 53 N TYR A 49 SHEET 1 C 4 SER A 10 VAL A 13 0 SHEET 2 C 4 THR A 102 ILE A 106 1 O GLU A 105 N MET A 11 SHEET 3 C 4 ASP A 85 GLN A 90 -1 N TYR A 86 O THR A 102 SHEET 4 C 4 THR A 97 PHE A 98 -1 O THR A 97 N GLN A 90 SHEET 1 D 4 THR A 114 PHE A 118 0 SHEET 2 D 4 GLY A 129 PHE A 139 -1 O ASN A 137 N THR A 114 SHEET 3 D 4 TYR A 173 THR A 182 -1 O MET A 175 N LEU A 136 SHEET 4 D 4 VAL A 159 TRP A 163 -1 N SER A 162 O SER A 176 SHEET 1 E 4 SER A 153 ARG A 155 0 SHEET 2 E 4 ASN A 145 ILE A 150 -1 N TRP A 148 O ARG A 155 SHEET 3 E 4 SER A 191 THR A 197 -1 O THR A 193 N LYS A 149 SHEET 4 E 4 ILE A 205 ASN A 210 -1 O LYS A 207 N CYS A 194 SHEET 1 F 4 GLN B 3 SER B 7 0 SHEET 2 F 4 LEU B 18 THR B 25 -1 O THR B 21 N SER B 7 SHEET 3 F 4 GLN B 78 LEU B 83 -1 O LEU B 83 N LEU B 18 SHEET 4 F 4 ILE B 68 ASP B 73 -1 N ASP B 73 O GLN B 78 SHEET 1 G 6 LEU B 11 VAL B 12 0 SHEET 2 G 6 THR B 110 VAL B 114 1 O THR B 113 N VAL B 12 SHEET 3 G 6 ALA B 92 ALA B 99 -1 N TYR B 94 O THR B 110 SHEET 4 G 6 ALA B 34 GLN B 40 -1 N ASN B 36 O VAL B 97 SHEET 5 G 6 LEU B 46 SER B 53 -1 O GLU B 47 N ARG B 39 SHEET 6 G 6 THR B 58 TYR B 60 -1 O ARG B 59 N TYR B 51 SHEET 1 H 4 TYR B 125 LEU B 127 0 SHEET 2 H 4 LEU B 141 TYR B 148 -1 O LEU B 144 N TYR B 125 SHEET 3 H 4 LEU B 177 VAL B 184 -1 O TYR B 178 N TYR B 148 SHEET 4 H 4 HIS B 167 GLN B 174 -1 N GLN B 174 O LEU B 177 SHEET 1 I 2 THR B 154 ALA B 157 0 SHEET 2 I 2 CYS B 198 ALA B 201 -1 O SER B 199 N THR B 156 SHEET 1 J 2 MET C 294 GLU C 296 0 SHEET 2 J 2 VAL C 299 LYS C 301 -1 O LYS C 301 N MET C 294 SSBOND 1 CYS A 23 CYS A 88 1555 1555 2.07 SSBOND 2 CYS A 134 CYS A 194 1555 1555 2.05 SSBOND 3 CYS B 22 CYS B 96 1555 1555 2.05 SSBOND 4 CYS B 143 CYS B 198 1555 1555 2.03 SSBOND 5 CYS C 287 CYS C 302 1555 1555 2.04 CISPEP 1 SER A 7 PRO A 8 0 -9.71 CISPEP 2 PHE A 94 PRO A 95 0 -1.56 CISPEP 3 TYR A 140 PRO A 141 0 4.64 CISPEP 4 PHE B 149 PRO B 150 0 -3.00 CISPEP 5 LYS B 211 LYS B 212 0 -10.98 SITE 1 AC1 3 GLN A 37 PRO A 59 ASP A 82 SITE 1 AC2 5 TYR B 148 GLU B 151 VAL B 153 PRO B 170 SITE 2 AC2 5 ALA B 171 SITE 1 AC3 2 ALA A 92 MET C 294 SITE 1 AC4 4 LYS A 149 SER B 31 TYR B 54 HOH B 251 SITE 1 AC5 3 THR B 140 VAL B 186 TRP B 191 SITE 1 AC6 2 GLU C 293 MET C 294 CRYST1 35.925 83.161 72.214 90.00 92.43 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027836 0.000000 0.001181 0.00000 SCALE2 0.000000 0.012025 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013860 0.00000