PDB Short entry for 3G7T HEADER VIRAL PROTEIN 10-FEB-09 3G7T TITLE CRYSTAL STRUCTURE OF DENGUE VIRUS TYPE 1 ENVELOPE PROTEIN IN THE TITLE 2 POSTFUSION CONFORMATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SOLUBLE ECTODOMAIN RESIDUES 1-400; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DENGUE VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11053; SOURCE 4 STRAIN: 98901518 DHF DV-1; SOURCE 5 GENE: E; SOURCE 6 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SCHNEIDER 2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMTBIP/V5-HIS KEYWDS MEMBRANE FUSION PROTEIN, ENVELOPE PROTEIN, MEMBRANE ANCHOR, FUSION KEYWDS 2 LOOP, IGC DOMAIN, BETA SANDWICH, GLYCOPROTEIN, MEMBRANE, KEYWDS 3 TRANSMEMBRANE, VIRION, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.MODIS REVDAT 6 06-SEP-23 3G7T 1 REMARK REVDAT 5 01-NOV-17 3G7T 1 REMARK REVDAT 4 23-APR-14 3G7T 1 REMARK REVDAT 3 28-MAR-12 3G7T 1 JRNL REVDAT 2 13-JUL-11 3G7T 1 VERSN REVDAT 1 21-APR-09 3G7T 0 JRNL AUTH V.NAYAK,M.DESSAU,K.KUCERA,K.ANTHONY,M.LEDIZET,Y.MODIS JRNL TITL CRYSTAL STRUCTURE OF DENGUE VIRUS TYPE 1 ENVELOPE PROTEIN IN JRNL TITL 2 THE POSTFUSION CONFORMATION AND ITS IMPLICATIONS FOR JRNL TITL 3 MEMBRANE FUSION. JRNL REF J.VIROL. V. 83 4338 2009 JRNL REFN ISSN 0022-538X JRNL PMID 19244332 JRNL DOI 10.1128/JVI.02574-08 REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0077 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 6786 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.297 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 311 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 418 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 26 REMARK 3 BIN FREE R VALUE : 0.2740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2905 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 1 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 73.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.11000 REMARK 3 B22 (A**2) : -4.11000 REMARK 3 B33 (A**2) : 6.17000 REMARK 3 B12 (A**2) : -2.06000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.711 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.511 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 71.167 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.919 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.839 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2961 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4014 ; 1.688 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 375 ; 9.401 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;46.066 ;25.133 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 530 ;26.037 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;16.424 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 475 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2138 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1873 ; 7.201 ; 2.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3035 ;11.621 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1088 ; 8.800 ; 2.500 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 979 ;13.366 ; 4.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 5 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 51 REMARK 3 RESIDUE RANGE : A 133 A 191 REMARK 3 RESIDUE RANGE : A 275 A 298 REMARK 3 RESIDUE RANGE : A 299 A 395 REMARK 3 RESIDUE RANGE : A 398 A 500 REMARK 3 ORIGIN FOR THE GROUP (A): -21.5530 28.6950 48.1520 REMARK 3 T TENSOR REMARK 3 T11: 0.3383 T22: 0.3835 REMARK 3 T33: 0.3475 T12: -0.0300 REMARK 3 T13: -0.0090 T23: -0.0178 REMARK 3 L TENSOR REMARK 3 L11: 1.1355 L22: 1.6382 REMARK 3 L33: 1.1817 L12: 0.7640 REMARK 3 L13: -0.8098 L23: 0.2794 REMARK 3 S TENSOR REMARK 3 S11: -0.0201 S12: -0.1462 S13: -0.0897 REMARK 3 S21: 0.0312 S22: 0.0930 S23: -0.2524 REMARK 3 S31: -0.0062 S32: 0.3016 S33: -0.0728 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 52 A 132 REMARK 3 RESIDUE RANGE : A 192 A 274 REMARK 3 RESIDUE RANGE : A 501 A 1396 REMARK 3 ORIGIN FOR THE GROUP (A): -25.1110 17.2980 1.7530 REMARK 3 T TENSOR REMARK 3 T11: 0.2569 T22: 0.5526 REMARK 3 T33: 0.4318 T12: -0.1523 REMARK 3 T13: 0.0220 T23: -0.0240 REMARK 3 L TENSOR REMARK 3 L11: 0.3837 L22: 0.7851 REMARK 3 L33: 8.2967 L12: 0.1067 REMARK 3 L13: 1.7347 L23: 1.0676 REMARK 3 S TENSOR REMARK 3 S11: -0.1533 S12: 0.2302 S13: -0.1020 REMARK 3 S21: -0.0923 S22: 0.2300 S23: -0.0764 REMARK 3 S31: -0.1493 S32: 0.7129 S33: -0.0767 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS, U VALUES RESIDUAL ONLY REMARK 4 REMARK 4 3G7T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051531. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-07; 25-AUG-07 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; NSLS REMARK 200 BEAMLINE : 24-ID-C; X25 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949; 0.97949 REMARK 200 MONOCHROMATOR : KOHZU HLD*-24; SI CRYSTAL REMARK 200 OPTICS : KOHZU HLD*-24 MONCHROMATOR REMARK 200 FOLLOWED BY VERTICAL AND REMARK 200 HORIZONTAL FOCUSING MIRRORS; PT- REMARK 200 COATED TOROIDAL SI MIRROR FOR REMARK 200 HORIZONTAL AND VERTICAL REMARK 200 FOCUSSING FOLLOWED BY DOUBLE REMARK 200 FLAT SI CRYSTAL MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; ADSC QUANTUM REMARK 200 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6794 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 12.10 REMARK 200 R MERGE (I) : 0.22300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.78300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.640 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1OK8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12.5% PEG 550 MME, 0.1 M MES PH 6.5, REMARK 280 10 MM ZNSO4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 146.40100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 146.40100 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 146.40100 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 146.40100 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 146.40100 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 146.40100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 48470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -104.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -37.82500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 65.51482 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -75.65000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 601 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 144 REMARK 465 THR A 145 REMARK 465 GLY A 146 REMARK 465 ASP A 147 REMARK 465 GLN A 148 REMARK 465 HIS A 149 REMARK 465 GLN A 150 REMARK 465 VAL A 151 REMARK 465 GLY A 152 REMARK 465 ASN A 153 REMARK 465 GLU A 154 REMARK 465 ALA A 224 REMARK 465 SER A 225 REMARK 465 THR A 226 REMARK 465 SER A 227 REMARK 465 GLN A 228 REMARK 465 LYS A 246 REMARK 465 LYS A 247 REMARK 465 ILE A 398 REMARK 465 GLY A 399 REMARK 465 LYS A 400 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 HIS A 317 OE2 GLU A 368 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O PRO A 75 OE1 GLU A 311 7455 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 116 CB CYS A 116 SG -0.131 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 356 C - N - CA ANGL. DEV. = 9.0 DEGREES REMARK 500 GLU A 362 CB - CA - C ANGL. DEV. = -12.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 2 -18.42 -144.13 REMARK 500 PHE A 11 146.25 -170.52 REMARK 500 ALA A 18 -156.72 -169.66 REMARK 500 ALA A 35 -166.08 -111.53 REMARK 500 ARG A 57 107.97 -167.15 REMARK 500 ASN A 67 72.64 33.47 REMARK 500 GLU A 85 -7.80 -58.35 REMARK 500 ALA A 88 49.74 -81.60 REMARK 500 TRP A 101 3.21 -69.82 REMARK 500 ASN A 103 29.85 -167.92 REMARK 500 LEU A 113 115.39 -171.86 REMARK 500 GLN A 131 -166.91 -117.65 REMARK 500 GLU A 133 22.60 -72.22 REMARK 500 GLU A 157 -156.44 -147.31 REMARK 500 HIS A 158 147.37 -34.60 REMARK 500 ASP A 177 -20.25 88.32 REMARK 500 ARG A 188 -54.12 -127.71 REMARK 500 PHE A 193 -3.68 -57.65 REMARK 500 LYS A 202 -120.21 56.04 REMARK 500 PRO A 217 92.12 -42.09 REMARK 500 HIS A 244 -169.19 -105.43 REMARK 500 SER A 255 133.43 -34.69 REMARK 500 GLU A 257 -56.07 -29.43 REMARK 500 LEU A 264 22.24 -71.24 REMARK 500 ALA A 331 109.67 -34.92 REMARK 500 ASN A 355 73.71 67.44 REMARK 500 LYS A 361 167.90 -46.84 REMARK 500 GLU A 362 -7.08 78.28 REMARK 500 LYS A 394 140.08 -173.07 REMARK 500 SER A 396 -167.56 -115.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MET A 1 ARG A 2 -145.98 REMARK 500 GLU A 229 THR A 230 -145.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1396 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE AUTHORS STATE THAT THERE ARE NO SEQUENCE CONFLICTS BETWEEN THE REMARK 999 SEQUENCE IN THE PDB FILE AND SEQUENCE DATABASE REFERENCE NCBI REMARK 999 BAD42413. DBREF 3G7T A 1 400 UNP Q5USP2 Q5USP2_9FLAV 1 400 SEQADV 3G7T ALA A 88 UNP Q5USP2 THR 88 SEE REMARK 999 SEQADV 3G7T LEU A 114 UNP Q5USP2 ILE 114 SEE REMARK 999 SEQADV 3G7T ALA A 250 UNP Q5USP2 VAL 250 SEE REMARK 999 SEQRES 1 A 400 MET ARG CYS VAL GLY ILE GLY ASN ARG ASP PHE VAL GLU SEQRES 2 A 400 GLY LEU SER GLY ALA THR TRP VAL ASP VAL VAL LEU GLU SEQRES 3 A 400 HIS GLY SER CYS VAL THR THR MET ALA LYS ASP LYS PRO SEQRES 4 A 400 THR LEU ASP ILE GLU LEU LEU LYS THR GLU VAL THR ASN SEQRES 5 A 400 PRO ALA VAL LEU ARG LYS LEU CYS ILE GLU ALA LYS ILE SEQRES 6 A 400 SER ASN THR THR THR ASP SER ARG CYS PRO THR GLN GLY SEQRES 7 A 400 GLU ALA THR LEU VAL GLU GLU GLN ASP ALA ASN PHE VAL SEQRES 8 A 400 CYS ARG ARG THR PHE VAL ASP ARG GLY TRP GLY ASN GLY SEQRES 9 A 400 CYS GLY LEU PHE GLY LYS GLY SER LEU LEU THR CYS ALA SEQRES 10 A 400 LYS PHE LYS CYS VAL THR LYS LEU GLU GLY LYS ILE VAL SEQRES 11 A 400 GLN TYR GLU ASN LEU LYS TYR SER VAL ILE VAL THR VAL SEQRES 12 A 400 HIS THR GLY ASP GLN HIS GLN VAL GLY ASN GLU THR THR SEQRES 13 A 400 GLU HIS GLY THR ILE ALA THR ILE THR PRO GLN ALA PRO SEQRES 14 A 400 THR SER GLU ILE GLN LEU THR ASP TYR GLY ALA LEU THR SEQRES 15 A 400 LEU ASP CYS SER PRO ARG THR GLY LEU ASP PHE ASN GLU SEQRES 16 A 400 MET VAL LEU LEU THR MET LYS GLU LYS SER TRP LEU VAL SEQRES 17 A 400 HIS LYS GLN TRP PHE LEU ASP LEU PRO LEU PRO TRP THR SEQRES 18 A 400 SER GLY ALA SER THR SER GLN GLU THR TRP ASN ARG GLN SEQRES 19 A 400 ASP LEU LEU VAL THR PHE LYS THR ALA HIS ALA LYS LYS SEQRES 20 A 400 GLN GLU ALA VAL VAL LEU GLY SER GLN GLU GLY ALA MET SEQRES 21 A 400 HIS THR ALA LEU THR GLY ALA THR GLU ILE GLN THR SER SEQRES 22 A 400 GLY THR THR THR ILE PHE ALA GLY HIS LEU LYS CYS ARG SEQRES 23 A 400 LEU LYS MET ASP LYS LEU THR LEU LYS GLY ILE SER TYR SEQRES 24 A 400 VAL MET CYS THR GLY SER PHE LYS LEU GLU LYS GLU VAL SEQRES 25 A 400 ALA GLU THR GLN HIS GLY THR VAL LEU VAL GLN VAL LYS SEQRES 26 A 400 TYR GLU GLY THR ASP ALA PRO CYS LYS ILE PRO PHE SER SEQRES 27 A 400 SER GLN ASP GLU LYS GLY VAL THR GLN ASN GLY ARG LEU SEQRES 28 A 400 VAL THR ALA ASN PRO ILE VAL THR ASP LYS GLU LYS PRO SEQRES 29 A 400 VAL ASN ILE GLU ALA GLU PRO PRO PHE GLY GLU SER TYR SEQRES 30 A 400 ILE VAL VAL GLY ALA GLY GLU LYS ALA LEU LYS LEU SER SEQRES 31 A 400 TRP PHE LYS LYS GLY SER SER ILE GLY LYS HET CL A1396 1 HETNAM CL CHLORIDE ION FORMUL 2 CL CL 1- FORMUL 3 HOH *(H2 O) HELIX 1 1 LEU A 82 GLN A 86 5 5 HELIX 2 2 GLY A 100 GLY A 104 5 5 HELIX 3 3 GLN A 131 GLU A 133 5 3 HELIX 4 4 LYS A 210 LEU A 214 1 5 HELIX 5 5 ARG A 233 LEU A 236 5 4 HELIX 6 6 GLN A 256 LEU A 264 1 9 SHEET 1 A 5 VAL A 4 GLY A 5 0 SHEET 2 A 5 CYS A 30 THR A 33 1 O THR A 32 N VAL A 4 SHEET 3 A 5 LEU A 41 THR A 51 -1 O ILE A 43 N VAL A 31 SHEET 4 A 5 LEU A 135 THR A 142 -1 O ILE A 140 N GLU A 44 SHEET 5 A 5 GLY A 159 ILE A 164 -1 O ILE A 164 N TYR A 137 SHEET 1 B 5 VAL A 4 GLY A 5 0 SHEET 2 B 5 CYS A 30 THR A 33 1 O THR A 32 N VAL A 4 SHEET 3 B 5 LEU A 41 THR A 51 -1 O ILE A 43 N VAL A 31 SHEET 4 B 5 THR A 276 PHE A 279 -1 O PHE A 279 N THR A 48 SHEET 5 B 5 THR A 272 SER A 273 -1 N SER A 273 O THR A 276 SHEET 1 C 5 PHE A 11 GLU A 13 0 SHEET 2 C 5 ALA A 18 VAL A 23 -1 O TRP A 20 N VAL A 12 SHEET 3 C 5 CYS A 285 ASP A 290 -1 O CYS A 285 N VAL A 23 SHEET 4 C 5 GLY A 179 ASP A 184 -1 N THR A 182 O LYS A 288 SHEET 5 C 5 THR A 170 LEU A 175 -1 N SER A 171 O LEU A 183 SHEET 1 D 4 ALA A 54 VAL A 55 0 SHEET 2 D 4 LYS A 110 ILE A 129 -1 O ILE A 129 N ALA A 54 SHEET 3 D 4 LYS A 58 SER A 72 -1 N LYS A 64 O LYS A 120 SHEET 4 D 4 TRP A 220 THR A 221 -1 O THR A 221 N LYS A 58 SHEET 1 E 5 PHE A 90 ASP A 98 0 SHEET 2 E 5 LYS A 110 ILE A 129 -1 O GLY A 111 N VAL A 97 SHEET 3 E 5 MET A 196 MET A 201 -1 O LEU A 198 N LYS A 128 SHEET 4 E 5 LYS A 204 HIS A 209 -1 O VAL A 208 N VAL A 197 SHEET 5 E 5 THR A 268 ILE A 270 -1 O ILE A 270 N SER A 205 SHEET 1 F 2 VAL A 238 LYS A 241 0 SHEET 2 F 2 GLU A 249 VAL A 252 -1 O GLU A 249 N LYS A 241 SHEET 1 G 3 VAL A 300 MET A 301 0 SHEET 2 G 3 CYS A 333 LYS A 334 1 O LYS A 334 N VAL A 300 SHEET 3 G 3 ILE A 357 VAL A 358 -1 O VAL A 358 N CYS A 333 SHEET 1 H 3 PHE A 306 GLU A 314 0 SHEET 2 H 3 VAL A 320 TYR A 326 -1 O GLN A 323 N GLU A 309 SHEET 3 H 3 VAL A 365 ALA A 369 -1 O ALA A 369 N VAL A 320 SHEET 1 I 4 THR A 346 GLN A 347 0 SHEET 2 I 4 PHE A 337 GLN A 340 -1 N SER A 339 O GLN A 347 SHEET 3 I 4 GLY A 374 VAL A 380 -1 O TYR A 377 N GLN A 340 SHEET 4 I 4 LEU A 387 LYS A 393 -1 O LEU A 387 N VAL A 380 SSBOND 1 CYS A 3 CYS A 30 1555 1555 2.05 SSBOND 2 CYS A 60 CYS A 121 1555 1555 2.03 SSBOND 3 CYS A 74 CYS A 105 1555 1555 2.05 SSBOND 4 CYS A 92 CYS A 116 1555 1555 2.04 SSBOND 5 CYS A 185 CYS A 285 1555 1555 2.05 SSBOND 6 CYS A 302 CYS A 333 1555 1555 2.05 CISPEP 1 ALA A 331 PRO A 332 0 9.67 SITE 1 AC1 1 GLY A 109 CRYST1 75.650 75.650 292.802 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013219 0.007632 0.000000 0.00000 SCALE2 0.000000 0.015264 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003415 0.00000