PDB Short entry for 3GD8 HEADER MEMBRANE PROTEIN 23-FEB-09 3GD8 TITLE CRYSTAL STRUCTURE OF HUMAN AQUAPORIN 4 AT 1.8 AND ITS MECHANISM OF TITLE 2 CONDUCTANCE COMPND MOL_ID: 1; COMPND 2 MOLECULE: AQUAPORIN-4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HAQP4 TRYPSINIZED (RESIDUE 32-254); COMPND 5 SYNONYM: AQP-4, WCH4, MERCURIAL-INSENSITIVE WATER CHANNEL, MIWC; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AQP4; SOURCE 6 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: X-33; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PPICZ KEYWDS BRAIN EDEMA, AQUAPORIN, PROTON EXCLUSION, STRUCTURAL GENOMICS, PSI-2, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, CENTER FOR STRUCTURES OF MEMBRANE KEYWDS 3 PROTEINS, CSMP, GLYCOPROTEIN, MEMBRANE, PHOSPHOPROTEIN, KEYWDS 4 TRANSMEMBRANE, TRANSPORT, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.D.HO,R.YEH,A.SANDSTROM,I.CHORNY,W.E.C.HARRIES,R.A.ROBBINS, AUTHOR 2 L.J.W.MIERCKE,R.M.STROUD,CENTER FOR STRUCTURES OF MEMBRANE PROTEINS AUTHOR 3 (CSMP) REVDAT 6 21-FEB-24 3GD8 1 HETSYN REVDAT 5 29-JUL-20 3GD8 1 COMPND REMARK HETNAM SITE REVDAT 4 13-JUL-11 3GD8 1 VERSN REVDAT 3 21-JUL-09 3GD8 1 JRNL REVDAT 2 12-MAY-09 3GD8 1 JRNL REVDAT 1 31-MAR-09 3GD8 0 JRNL AUTH J.D.HO,R.YEH,A.SANDSTROM,I.CHORNY,W.E.HARRIES,R.A.ROBBINS, JRNL AUTH 2 L.J.MIERCKE,R.M.STROUD JRNL TITL CRYSTAL STRUCTURE OF HUMAN AQUAPORIN 4 AT 1.8 A AND ITS JRNL TITL 2 MECHANISM OF CONDUCTANCE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 7437 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19383790 JRNL DOI 10.1073/PNAS.0902725106 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 23583 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.165 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1265 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1706 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.1790 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.1820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1654 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 62 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.21000 REMARK 3 B22 (A**2) : -0.21000 REMARK 3 B33 (A**2) : 0.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.096 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.083 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.047 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.241 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1757 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1136 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2390 ; 1.047 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2794 ; 0.900 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 226 ; 5.179 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 52 ;30.498 ;23.077 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 259 ;12.978 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;21.784 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 286 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1900 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 354 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 57 ; 0.130 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 7 ; 0.090 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 54 ; 0.197 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.152 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1106 ; 0.392 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 465 ; 0.121 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1784 ; 0.709 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 651 ; 1.314 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 605 ; 2.054 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 19 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 32 A 36 REMARK 3 ORIGIN FOR THE GROUP (A): -0.5880 -10.7350 4.1430 REMARK 3 T TENSOR REMARK 3 T11: 0.1678 T22: 0.0709 REMARK 3 T33: 0.1616 T12: 0.0548 REMARK 3 T13: 0.0056 T23: 0.1317 REMARK 3 L TENSOR REMARK 3 L11: 58.6122 L22: 51.2100 REMARK 3 L33: 97.5897 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.5839 S12: 1.1593 S13: 2.9200 REMARK 3 S21: 0.5241 S22: 0.9804 S23: 1.2543 REMARK 3 S31: -2.0218 S32: -1.2571 S33: -1.5643 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 37 A 47 REMARK 3 ORIGIN FOR THE GROUP (A): -1.1360 -16.3790 14.8170 REMARK 3 T TENSOR REMARK 3 T11: 0.0303 T22: -0.0316 REMARK 3 T33: -0.0206 T12: 0.0023 REMARK 3 T13: -0.0094 T23: 0.0374 REMARK 3 L TENSOR REMARK 3 L11: 1.5268 L22: 4.8769 REMARK 3 L33: 4.9459 L12: 0.1417 REMARK 3 L13: -0.6626 L23: -1.0133 REMARK 3 S TENSOR REMARK 3 S11: -0.0448 S12: 0.1796 S13: 0.2734 REMARK 3 S21: -0.1532 S22: 0.1599 S23: -0.0523 REMARK 3 S31: -0.2907 S32: -0.2835 S33: -0.1152 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 48 A 59 REMARK 3 ORIGIN FOR THE GROUP (A): -1.8270 -24.4100 30.1000 REMARK 3 T TENSOR REMARK 3 T11: -0.0722 T22: -0.0874 REMARK 3 T33: -0.0657 T12: -0.0086 REMARK 3 T13: 0.0015 T23: -0.0221 REMARK 3 L TENSOR REMARK 3 L11: 3.6824 L22: 2.6757 REMARK 3 L33: 7.0618 L12: -0.8426 REMARK 3 L13: -1.8584 L23: 0.8197 REMARK 3 S TENSOR REMARK 3 S11: -0.0473 S12: -0.2199 S13: 0.0926 REMARK 3 S21: 0.0896 S22: -0.0212 S23: 0.0320 REMARK 3 S31: -0.0205 S32: -0.0528 S33: 0.0686 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 60 A 65 REMARK 3 ORIGIN FOR THE GROUP (A): -0.7670 -25.7080 46.2830 REMARK 3 T TENSOR REMARK 3 T11: 0.7576 T22: 0.7699 REMARK 3 T33: 0.3729 T12: 0.0460 REMARK 3 T13: 0.1165 T23: -0.2119 REMARK 3 L TENSOR REMARK 3 L11: 51.0506 L22: 73.3913 REMARK 3 L33: 82.7938 L12: 2.7984 REMARK 3 L13: -8.4317 L23: 5.2320 REMARK 3 S TENSOR REMARK 3 S11: 1.2514 S12: -5.9029 S13: 2.3218 REMARK 3 S21: 5.0672 S22: 0.0770 S23: -2.0560 REMARK 3 S31: -2.1399 S32: 2.6216 S33: -1.3285 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 66 A 71 REMARK 3 ORIGIN FOR THE GROUP (A): 2.2170 -34.2780 36.1930 REMARK 3 T TENSOR REMARK 3 T11: 0.1614 T22: 0.3762 REMARK 3 T33: -0.0164 T12: 0.1357 REMARK 3 T13: 0.0264 T23: -0.0320 REMARK 3 L TENSOR REMARK 3 L11: 28.2222 L22: 21.2315 REMARK 3 L33: 82.8711 L12: -4.7260 REMARK 3 L13: 16.2630 L23: 7.6105 REMARK 3 S TENSOR REMARK 3 S11: -1.0308 S12: -3.5912 S13: 0.3302 REMARK 3 S21: 1.9875 S22: 0.3743 S23: 0.2244 REMARK 3 S31: -1.7779 S32: -2.8241 S33: 0.6566 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 72 A 92 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0020 -27.7380 16.5900 REMARK 3 T TENSOR REMARK 3 T11: -0.0674 T22: -0.0865 REMARK 3 T33: -0.0857 T12: -0.0058 REMARK 3 T13: 0.0082 T23: 0.0107 REMARK 3 L TENSOR REMARK 3 L11: 1.5625 L22: 2.9065 REMARK 3 L33: 5.8975 L12: -0.7806 REMARK 3 L13: 1.0517 L23: -2.1987 REMARK 3 S TENSOR REMARK 3 S11: -0.0324 S12: 0.1305 S13: 0.1054 REMARK 3 S21: -0.1651 S22: -0.0102 S23: -0.0079 REMARK 3 S31: -0.1539 S32: 0.0199 S33: 0.0426 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 93 A 102 REMARK 3 ORIGIN FOR THE GROUP (A): 9.1410 -20.2050 13.5580 REMARK 3 T TENSOR REMARK 3 T11: 0.0166 T22: -0.0396 REMARK 3 T33: -0.0515 T12: -0.0193 REMARK 3 T13: 0.0247 T23: 0.0446 REMARK 3 L TENSOR REMARK 3 L11: 7.0583 L22: 1.6588 REMARK 3 L33: 6.4385 L12: -0.5595 REMARK 3 L13: 2.4442 L23: -1.2497 REMARK 3 S TENSOR REMARK 3 S11: 0.0709 S12: 0.1779 S13: -0.0162 REMARK 3 S21: -0.3188 S22: 0.0922 S23: 0.0412 REMARK 3 S31: -0.0080 S32: -0.1090 S33: -0.1632 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 103 A 115 REMARK 3 ORIGIN FOR THE GROUP (A): 14.7690 -16.2900 5.7090 REMARK 3 T TENSOR REMARK 3 T11: 0.0716 T22: 0.1360 REMARK 3 T33: 0.0069 T12: -0.0440 REMARK 3 T13: 0.0856 T23: 0.0989 REMARK 3 L TENSOR REMARK 3 L11: 8.6660 L22: 12.7926 REMARK 3 L33: 10.8012 L12: -6.9296 REMARK 3 L13: 2.5390 L23: -0.1866 REMARK 3 S TENSOR REMARK 3 S11: 0.3860 S12: 0.7722 S13: 0.3942 REMARK 3 S21: -0.4293 S22: -0.5419 S23: -0.0662 REMARK 3 S31: -0.1966 S32: 0.2536 S33: 0.1559 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 116 A 132 REMARK 3 ORIGIN FOR THE GROUP (A): 3.2380 -12.4900 18.4860 REMARK 3 T TENSOR REMARK 3 T11: 0.0582 T22: -0.0725 REMARK 3 T33: 0.0095 T12: -0.0026 REMARK 3 T13: 0.0116 T23: 0.0405 REMARK 3 L TENSOR REMARK 3 L11: 4.1071 L22: 1.1662 REMARK 3 L33: 9.8576 L12: -0.7054 REMARK 3 L13: -5.1669 L23: 0.4683 REMARK 3 S TENSOR REMARK 3 S11: 0.1499 S12: 0.2452 S13: 0.3780 REMARK 3 S21: -0.1973 S22: -0.0157 S23: -0.0392 REMARK 3 S31: -0.5947 S32: -0.2003 S33: -0.1341 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 133 A 148 REMARK 3 ORIGIN FOR THE GROUP (A): -2.2990 -18.1680 35.3940 REMARK 3 T TENSOR REMARK 3 T11: -0.0168 T22: -0.0360 REMARK 3 T33: -0.0087 T12: 0.0126 REMARK 3 T13: 0.0273 T23: -0.0358 REMARK 3 L TENSOR REMARK 3 L11: 4.5623 L22: 0.9071 REMARK 3 L33: 1.5217 L12: 0.6574 REMARK 3 L13: -0.4769 L23: 0.0387 REMARK 3 S TENSOR REMARK 3 S11: -0.0078 S12: -0.3027 S13: 0.3431 REMARK 3 S21: 0.1276 S22: -0.0251 S23: 0.0765 REMARK 3 S31: -0.2569 S32: -0.1190 S33: 0.0329 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 149 A 154 REMARK 3 ORIGIN FOR THE GROUP (A): 17.3070 -25.4730 37.5600 REMARK 3 T TENSOR REMARK 3 T11: -0.0267 T22: -0.0490 REMARK 3 T33: -0.0191 T12: -0.0307 REMARK 3 T13: -0.0171 T23: -0.0596 REMARK 3 L TENSOR REMARK 3 L11: 20.4206 L22: 15.9608 REMARK 3 L33: 0.0000 L12: 10.9028 REMARK 3 L13: -6.3191 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: -0.3620 S12: -0.6643 S13: 0.4752 REMARK 3 S21: 0.5784 S22: 0.4641 S23: -0.4215 REMARK 3 S31: -0.2410 S32: -0.3279 S33: -0.1021 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 155 A 171 REMARK 3 ORIGIN FOR THE GROUP (A): 19.4480 -27.1220 23.7080 REMARK 3 T TENSOR REMARK 3 T11: -0.0829 T22: -0.0399 REMARK 3 T33: -0.0545 T12: -0.0421 REMARK 3 T13: 0.0083 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 2.1035 L22: 2.0435 REMARK 3 L33: 8.7454 L12: 0.6954 REMARK 3 L13: 2.6710 L23: 1.9503 REMARK 3 S TENSOR REMARK 3 S11: -0.0282 S12: 0.0720 S13: 0.1198 REMARK 3 S21: 0.0244 S22: -0.0063 S23: -0.2452 REMARK 3 S31: -0.1461 S32: 0.4528 S33: 0.0345 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 172 A 177 REMARK 3 ORIGIN FOR THE GROUP (A): 13.8010 -30.8200 9.3790 REMARK 3 T TENSOR REMARK 3 T11: -0.0148 T22: -0.0233 REMARK 3 T33: -0.0831 T12: -0.0377 REMARK 3 T13: 0.0324 T23: 0.0354 REMARK 3 L TENSOR REMARK 3 L11: 8.2750 L22: 4.4903 REMARK 3 L33: 7.4915 L12: -1.1222 REMARK 3 L13: 3.7075 L23: 1.8162 REMARK 3 S TENSOR REMARK 3 S11: 0.0500 S12: 0.4925 S13: 0.2380 REMARK 3 S21: -0.5423 S22: -0.0217 S23: 0.0433 REMARK 3 S31: -0.1472 S32: 0.2443 S33: -0.0283 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 178 A 185 REMARK 3 ORIGIN FOR THE GROUP (A): 11.9520 -35.3890 0.7290 REMARK 3 T TENSOR REMARK 3 T11: 0.1955 T22: 0.3089 REMARK 3 T33: -0.0407 T12: -0.1176 REMARK 3 T13: 0.0201 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 17.2494 L22: 11.0547 REMARK 3 L33: 9.8179 L12: 7.0784 REMARK 3 L13: -0.4871 L23: 2.8137 REMARK 3 S TENSOR REMARK 3 S11: -0.9275 S12: 1.8249 S13: -0.3756 REMARK 3 S21: -1.3392 S22: 0.7064 S23: -0.2802 REMARK 3 S31: -0.1462 S32: -0.1516 S33: 0.2212 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 186 A 197 REMARK 3 ORIGIN FOR THE GROUP (A): 5.2590 -34.8340 13.1960 REMARK 3 T TENSOR REMARK 3 T11: -0.0611 T22: -0.0688 REMARK 3 T33: -0.0813 T12: -0.0007 REMARK 3 T13: 0.0080 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 2.0423 L22: 1.5780 REMARK 3 L33: 7.7878 L12: 1.1645 REMARK 3 L13: 0.7193 L23: 2.4773 REMARK 3 S TENSOR REMARK 3 S11: -0.0022 S12: 0.1852 S13: -0.0179 REMARK 3 S21: -0.1522 S22: -0.1107 S23: 0.0269 REMARK 3 S31: 0.2489 S32: -0.1075 S33: 0.1129 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 198 A 210 REMARK 3 ORIGIN FOR THE GROUP (A): 12.0400 -31.5340 28.7410 REMARK 3 T TENSOR REMARK 3 T11: -0.0972 T22: -0.0974 REMARK 3 T33: -0.0979 T12: -0.0200 REMARK 3 T13: 0.0048 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 4.3491 L22: 2.5704 REMARK 3 L33: 3.9295 L12: 1.0469 REMARK 3 L13: 2.5241 L23: 1.5938 REMARK 3 S TENSOR REMARK 3 S11: -0.0040 S12: -0.1322 S13: 0.0714 REMARK 3 S21: 0.1749 S22: -0.0261 S23: 0.0646 REMARK 3 S31: 0.0538 S32: 0.0328 S33: 0.0302 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 211 A 232 REMARK 3 ORIGIN FOR THE GROUP (A): 10.6140 -16.2870 28.5630 REMARK 3 T TENSOR REMARK 3 T11: -0.0002 T22: -0.0718 REMARK 3 T33: -0.0230 T12: -0.0334 REMARK 3 T13: 0.0055 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 2.6332 L22: 1.3571 REMARK 3 L33: 2.2283 L12: -0.3347 REMARK 3 L13: -0.8259 L23: 0.6941 REMARK 3 S TENSOR REMARK 3 S11: 0.0139 S12: -0.1548 S13: 0.2453 REMARK 3 S21: 0.0944 S22: -0.0001 S23: -0.0453 REMARK 3 S31: -0.2043 S32: 0.1630 S33: -0.0139 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 233 A 248 REMARK 3 ORIGIN FOR THE GROUP (A): 19.2480 -22.6700 16.6920 REMARK 3 T TENSOR REMARK 3 T11: -0.0190 T22: -0.0021 REMARK 3 T33: -0.0407 T12: -0.0511 REMARK 3 T13: 0.0376 T23: 0.0258 REMARK 3 L TENSOR REMARK 3 L11: 1.1957 L22: 2.9283 REMARK 3 L33: 6.3176 L12: -0.7363 REMARK 3 L13: -1.2545 L23: 3.4620 REMARK 3 S TENSOR REMARK 3 S11: 0.0106 S12: 0.1223 S13: 0.1422 REMARK 3 S21: -0.3424 S22: 0.0628 S23: -0.1981 REMARK 3 S31: -0.2987 S32: 0.3243 S33: -0.0734 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 249 A 254 REMARK 3 ORIGIN FOR THE GROUP (A): 23.0670 -29.6330 3.7490 REMARK 3 T TENSOR REMARK 3 T11: 0.1332 T22: 0.2353 REMARK 3 T33: 0.0723 T12: -0.0600 REMARK 3 T13: 0.1306 T23: -0.0183 REMARK 3 L TENSOR REMARK 3 L11: 29.1347 L22: 15.9691 REMARK 3 L33: 26.3279 L12: 4.5791 REMARK 3 L13: 3.5176 L23: -6.3769 REMARK 3 S TENSOR REMARK 3 S11: -0.6827 S12: 1.4805 S13: 0.4427 REMARK 3 S21: -0.7471 S22: 0.5361 S23: -0.0241 REMARK 3 S31: -0.9542 S32: 0.6121 S33: 0.1467 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3GD8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000051714. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-08 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23583 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 12.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG-2K-MME, 50MM CITRATE, PH 6.0, REMARK 280 40MM OG, 5% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.02900 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.02900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.02900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.02900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.02900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.02900 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.02900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.02900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: TETRAMER IS GENERATED BY THE 4 FOLD AXIS. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -134.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -82.05800 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 -41.02900 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 -41.02900 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 41.02900 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 -41.02900 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 18 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 97 111.83 -175.99 REMARK 500 ASN A 97 111.83 -175.57 REMARK 500 MET A 212 9.27 58.79 REMARK 500 MET A 212 11.36 56.68 REMARK 500 ASN A 213 100.07 -164.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1070S RELATED DB: TARGETDB DBREF 3GD8 A 32 254 UNP P55087 AQP4_HUMAN 32 254 SEQRES 1 A 223 GLN ALA PHE TRP LYS ALA VAL THR ALA GLU PHE LEU ALA SEQRES 2 A 223 MET LEU ILE PHE VAL LEU LEU SER LEU GLY SER THR ILE SEQRES 3 A 223 ASN TRP GLY GLY THR GLU LYS PRO LEU PRO VAL ASP MET SEQRES 4 A 223 VAL LEU ILE SER LEU CYS PHE GLY LEU SER ILE ALA THR SEQRES 5 A 223 MET VAL GLN CYS PHE GLY HIS ILE SER GLY GLY HIS ILE SEQRES 6 A 223 ASN PRO ALA VAL THR VAL ALA MET VAL CYS THR ARG LYS SEQRES 7 A 223 ILE SER ILE ALA LYS SER VAL PHE TYR ILE ALA ALA GLN SEQRES 8 A 223 CYS LEU GLY ALA ILE ILE GLY ALA GLY ILE LEU TYR LEU SEQRES 9 A 223 VAL THR PRO PRO SER VAL VAL GLY GLY LEU GLY VAL THR SEQRES 10 A 223 MET VAL HIS GLY ASN LEU THR ALA GLY HIS GLY LEU LEU SEQRES 11 A 223 VAL GLU LEU ILE ILE THR PHE GLN LEU VAL PHE THR ILE SEQRES 12 A 223 PHE ALA SER CYS ASP SER LYS ARG THR ASP VAL THR GLY SEQRES 13 A 223 SER ILE ALA LEU ALA ILE GLY PHE SER VAL ALA ILE GLY SEQRES 14 A 223 HIS LEU PHE ALA ILE ASN TYR THR GLY ALA SER MET ASN SEQRES 15 A 223 PRO ALA ARG SER PHE GLY PRO ALA VAL ILE MET GLY ASN SEQRES 16 A 223 TRP GLU ASN HIS TRP ILE TYR TRP VAL GLY PRO ILE ILE SEQRES 17 A 223 GLY ALA VAL LEU ALA GLY GLY LEU TYR GLU TYR VAL PHE SEQRES 18 A 223 CYS PRO HET GOL A 1 6 HET GOL A 2 6 HET GOL A 3 6 HET GOL A 4 6 HET GOL A 6 6 HET BOG A 473 20 HETNAM GOL GLYCEROL HETNAM BOG OCTYL BETA-D-GLUCOPYRANOSIDE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN BOG BETA-OCTYLGLUCOSIDE; OCTYL BETA-D-GLUCOSIDE; OCTYL D- HETSYN 2 BOG GLUCOSIDE; OCTYL GLUCOSIDE FORMUL 2 GOL 5(C3 H8 O3) FORMUL 7 BOG C14 H28 O6 FORMUL 8 HOH *62(H2 O) HELIX 1 1 GLN A 32 THR A 56 1 25 HELIX 2 2 ASP A 69 GLY A 93 1 25 HELIX 3 3 ASN A 97 THR A 107 1 11 HELIX 4 4 SER A 111 THR A 137 1 27 HELIX 5 5 PRO A 138 GLY A 143 1 6 HELIX 6 6 THR A 155 CYS A 178 1 24 HELIX 7 7 SER A 188 GLY A 209 1 22 HELIX 8 8 ASN A 213 GLY A 225 1 13 HELIX 9 9 TRP A 231 VAL A 251 1 21 CRYST1 82.058 82.058 76.353 90.00 90.00 90.00 P 4 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012187 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012187 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013097 0.00000