PDB Short entry for 3GP4 HEADER TRANSCRIPTION REGULATOR 20-MAR-09 3GP4 TITLE CRYSTAL STRUCTURE OF PUTATIVE MERR FAMILY TRANSCRIPTIONAL REGULATOR TITLE 2 FROM LISTERIA MONOCYTOGENES COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, MERR FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 20-150; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES STR. 4B F2365; SOURCE 3 ORGANISM_TAXID: 265669; SOURCE 4 STRAIN: F2365, SEROTYPE 4B; SOURCE 5 GENE: LMOF2365_2715; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BC-PSGX4(BC) KEYWDS STRUCTURAL GENOMICS, MERR, TRANSCRIPTIONAL REGULATOR, DNA-BINDING, KEYWDS 2 TRANSCRIPTION REGULATOR, PSI-2, PROTEIN STRUCTURE INITIATIVE, NEW KEYWDS 3 YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, NYSGXRC EXPDTA X-RAY DIFFRACTION AUTHOR U.A.RAMAGOPAL,R.TORO,C.MORANO,S.K.BURLEY,S.C.ALMO,NEW YORK SGX AUTHOR 2 RESEARCH CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 5 21-FEB-24 3GP4 1 REMARK REVDAT 4 10-FEB-21 3GP4 1 AUTHOR JRNL REMARK SEQADV REVDAT 4 2 1 LINK REVDAT 3 01-NOV-17 3GP4 1 REMARK REVDAT 2 13-JUL-11 3GP4 1 VERSN REVDAT 1 21-APR-09 3GP4 0 JRNL AUTH U.A.RAMAGOPAL,R.TORO,C.MORANO,S.K.BURLEY,S.C.ALMO JRNL TITL STRUCTURE OF PUTATIVE MERR FAMILY TRANSCRIPTIONAL REGULATOR JRNL TITL 2 FROM LISTERIA MONOCYTOGENES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 39909 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2022 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2785 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 163 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2161 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 247 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.17000 REMARK 3 B22 (A**2) : 7.17000 REMARK 3 B33 (A**2) : -14.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.021 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.022 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.403 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2234 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2999 ; 1.579 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 266 ; 5.181 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 122 ;32.013 ;23.443 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 433 ;17.232 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;19.874 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 326 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1685 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1319 ; 0.896 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2122 ; 1.545 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 915 ; 2.640 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 875 ; 4.303 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H,K,L REMARK 3 TWIN FRACTION : 0.526 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -H-K,K,-L REMARK 3 TWIN FRACTION : 0.474 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. U VALUES: REFINED INDIVIDUALLY. 3. REMARK 3 UNUSUALLY CLOSE (2.45 A) DISTANCE OBSERVED BETWEEN SD ATOMS OF REMARK 3 MET A 116 AND MET B 116. REMARK 4 REMARK 4 3GP4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000052139. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39943 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 18.80 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 39.4090 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 17.40 REMARK 200 R MERGE FOR SHELL (I) : 0.77300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL PH 7.0, 20% PEG 1000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 63.56300 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 63.56300 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 63.56300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -84.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 80.64700 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 40.32350 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 69.84235 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 17 REMARK 465 ASN A 150 REMARK 465 GLU A 151 REMARK 465 GLY A 152 REMARK 465 HIS A 153 REMARK 465 HIS A 154 REMARK 465 HIS A 155 REMARK 465 HIS A 156 REMARK 465 HIS A 157 REMARK 465 HIS A 158 REMARK 465 MET B 17 REMARK 465 ARG B 148 REMARK 465 SER B 149 REMARK 465 ASN B 150 REMARK 465 GLU B 151 REMARK 465 GLY B 152 REMARK 465 HIS B 153 REMARK 465 HIS B 154 REMARK 465 HIS B 155 REMARK 465 HIS B 156 REMARK 465 HIS B 157 REMARK 465 HIS B 158 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 60 NH2 ARG B 63 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 133 -66.04 -123.89 REMARK 500 VAL B 146 -72.45 -61.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 159 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 18 O REMARK 620 2 HOH B 222 O 70.2 REMARK 620 3 HOH B 248 O 84.1 74.2 REMARK 620 4 HOH B 255 O 84.5 83.2 157.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 159 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MED B 513 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-13951A RELATED DB: TARGETDB DBREF 3GP4 A 20 150 UNP Q71W36 Q71W36_LISMF 20 150 DBREF 3GP4 B 20 150 UNP Q71W36 Q71W36_LISMF 20 150 SEQADV 3GP4 MET A 17 UNP Q71W36 EXPRESSION TAG SEQADV 3GP4 SER A 18 UNP Q71W36 EXPRESSION TAG SEQADV 3GP4 LEU A 19 UNP Q71W36 EXPRESSION TAG SEQADV 3GP4 GLU A 151 UNP Q71W36 EXPRESSION TAG SEQADV 3GP4 GLY A 152 UNP Q71W36 EXPRESSION TAG SEQADV 3GP4 HIS A 153 UNP Q71W36 EXPRESSION TAG SEQADV 3GP4 HIS A 154 UNP Q71W36 EXPRESSION TAG SEQADV 3GP4 HIS A 155 UNP Q71W36 EXPRESSION TAG SEQADV 3GP4 HIS A 156 UNP Q71W36 EXPRESSION TAG SEQADV 3GP4 HIS A 157 UNP Q71W36 EXPRESSION TAG SEQADV 3GP4 HIS A 158 UNP Q71W36 EXPRESSION TAG SEQADV 3GP4 MET B 17 UNP Q71W36 EXPRESSION TAG SEQADV 3GP4 SER B 18 UNP Q71W36 EXPRESSION TAG SEQADV 3GP4 LEU B 19 UNP Q71W36 EXPRESSION TAG SEQADV 3GP4 GLU B 151 UNP Q71W36 EXPRESSION TAG SEQADV 3GP4 GLY B 152 UNP Q71W36 EXPRESSION TAG SEQADV 3GP4 HIS B 153 UNP Q71W36 EXPRESSION TAG SEQADV 3GP4 HIS B 154 UNP Q71W36 EXPRESSION TAG SEQADV 3GP4 HIS B 155 UNP Q71W36 EXPRESSION TAG SEQADV 3GP4 HIS B 156 UNP Q71W36 EXPRESSION TAG SEQADV 3GP4 HIS B 157 UNP Q71W36 EXPRESSION TAG SEQADV 3GP4 HIS B 158 UNP Q71W36 EXPRESSION TAG SEQRES 1 A 142 MET SER LEU ASN ILE LYS GLU ALA SER GLU LYS SER GLY SEQRES 2 A 142 VAL SER ALA ASP THR ILE ARG TYR TYR GLU ARG ILE GLY SEQRES 3 A 142 LEU ILE PRO PRO ILE HIS ARG ASN GLU SER GLY VAL ARG SEQRES 4 A 142 LYS PHE GLY ALA GLU ASP LEU ARG TRP ILE LEU PHE THR SEQRES 5 A 142 ARG GLN MET ARG ARG ALA GLY LEU SER ILE GLU ALA LEU SEQRES 6 A 142 ILE ASP TYR LEU ALA LEU PHE ARG GLU GLY GLU HIS THR SEQRES 7 A 142 LEU GLU ALA ARG ALA GLU LEU LEU LYS LYS GLN ARG ILE SEQRES 8 A 142 GLU LEU LYS ASN ARG ILE ASP VAL MET GLN GLU ALA LEU SEQRES 9 A 142 ASP ARG LEU ASP PHE LYS ILE ASP ASN TYR ASP THR HIS SEQRES 10 A 142 LEU ILE PRO ALA GLN GLU GLU LEU LYS ASP PHE ASN VAL SEQRES 11 A 142 GLU ARG SER ASN GLU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 142 MET SER LEU ASN ILE LYS GLU ALA SER GLU LYS SER GLY SEQRES 2 B 142 VAL SER ALA ASP THR ILE ARG TYR TYR GLU ARG ILE GLY SEQRES 3 B 142 LEU ILE PRO PRO ILE HIS ARG ASN GLU SER GLY VAL ARG SEQRES 4 B 142 LYS PHE GLY ALA GLU ASP LEU ARG TRP ILE LEU PHE THR SEQRES 5 B 142 ARG GLN MET ARG ARG ALA GLY LEU SER ILE GLU ALA LEU SEQRES 6 B 142 ILE ASP TYR LEU ALA LEU PHE ARG GLU GLY GLU HIS THR SEQRES 7 B 142 LEU GLU ALA ARG ALA GLU LEU LEU LYS LYS GLN ARG ILE SEQRES 8 B 142 GLU LEU LYS ASN ARG ILE ASP VAL MET GLN GLU ALA LEU SEQRES 9 B 142 ASP ARG LEU ASP PHE LYS ILE ASP ASN TYR ASP THR HIS SEQRES 10 B 142 LEU ILE PRO ALA GLN GLU GLU LEU LYS ASP PHE ASN VAL SEQRES 11 B 142 GLU ARG SER ASN GLU GLY HIS HIS HIS HIS HIS HIS HET GOL A 2 6 HET GOL B 1 6 HET NA B 159 1 HET MED B 513 9 HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETNAM MED D-METHIONINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 NA NA 1+ FORMUL 6 MED C5 H11 N O2 S FORMUL 7 HOH *247(H2 O) HELIX 1 1 ASN A 20 GLY A 29 1 10 HELIX 2 2 SER A 31 ILE A 41 1 11 HELIX 3 3 GLY A 58 ALA A 74 1 17 HELIX 4 4 SER A 77 GLY A 91 1 15 HELIX 5 5 THR A 94 HIS A 133 1 40 HELIX 6 6 HIS A 133 GLU A 147 1 15 HELIX 7 7 ASN B 20 GLY B 29 1 10 HELIX 8 8 SER B 31 ILE B 41 1 11 HELIX 9 9 GLY B 58 ALA B 74 1 17 HELIX 10 10 SER B 77 GLY B 91 1 15 HELIX 11 11 THR B 94 HIS B 133 1 40 HELIX 12 12 HIS B 133 GLN B 138 1 6 HELIX 13 13 GLU B 140 GLU B 147 1 8 SHEET 1 A 2 HIS B 48 ARG B 49 0 SHEET 2 A 2 ARG B 55 LYS B 56 -1 O LYS B 56 N HIS B 48 LINK O SER B 18 NA NA B 159 1555 1555 2.39 LINK NA NA B 159 O HOH B 222 1555 1555 2.58 LINK NA NA B 159 O HOH B 248 1555 1555 2.39 LINK NA NA B 159 O HOH B 255 1555 1555 2.83 SITE 1 AC1 5 TYR A 38 ARG A 69 ARG A 72 ILE A 78 SITE 2 AC1 5 HOH A 241 SITE 1 AC2 6 ARG B 49 GLY B 53 ASP B 83 LEU B 87 SITE 2 AC2 6 HOH B 195 HOH B 246 SITE 1 AC3 5 SER B 18 GLU B 139 HOH B 222 HOH B 248 SITE 2 AC3 5 HOH B 255 SITE 1 AC4 4 LYS A 126 TYR A 130 TYR B 84 PHE B 88 CRYST1 80.647 80.647 127.126 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012400 0.007159 0.000000 0.00000 SCALE2 0.000000 0.014318 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007866 0.00000