PDB Short entry for 3H4L HEADER DNA BINDING PROTEIN, PROTEIN BINDING 20-APR-09 3H4L TITLE CRYSTAL STRUCTURE OF N TERMINAL DOMAIN OF A DNA REPAIR PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA MISMATCH REPAIR PROTEIN PMS1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-365; COMPND 5 SYNONYM: POSTMEIOTIC SEGREGATION PROTEIN 1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BREWER'S YEAST,LAGER BEER YEAST,YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: PMS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX4T3 KEYWDS PMS1, ATP BINDING, DNA REPAIR, DNA DAMAGE, NUCLEUS, PHOSPHOPROTEIN, KEYWDS 2 DNA BINDING PROTEIN, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR M.E.ARANA,S.F.HOLMES,J.M.FORTUNE,A.F.MOON,L.C.PEDERSEN,T.A.KUNKEL REVDAT 3 06-SEP-23 3H4L 1 REMARK SEQADV LINK REVDAT 2 28-APR-10 3H4L 1 JRNL REVDAT 1 02-MAR-10 3H4L 0 JRNL AUTH M.E.ARANA,S.F.HOLMES,J.M.FORTUNE,A.F.MOON,L.C.PEDERSEN, JRNL AUTH 2 T.A.KUNKEL JRNL TITL FUNCTIONAL RESIDUES ON THE SURFACE OF THE N-TERMINAL DOMAIN JRNL TITL 2 OF YEAST PMS1. JRNL REF DNA REPAIR V. 9 448 2010 JRNL REFN ISSN 1568-7864 JRNL PMID 20138591 JRNL DOI 10.1016/J.DNAREP.2010.01.010 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 353589.480 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.6 REMARK 3 NUMBER OF REFLECTIONS : 30006 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1482 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4305 REMARK 3 BIN R VALUE (WORKING SET) : 0.3400 REMARK 3 BIN FREE R VALUE : 0.3500 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 227 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.023 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5214 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 141 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.07000 REMARK 3 B22 (A**2) : 6.92000 REMARK 3 B33 (A**2) : -12.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM SIGMAA (A) : 0.39 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.44 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.46 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.880 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.290 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.180 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.910 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.790 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.28 REMARK 3 BSOL : 21.31 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION_CIS149.PARAM REMARK 3 PARAMETER FILE 3 : ANP.PAR REMARK 3 PARAMETER FILE 4 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3H4L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052684. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30119 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.45000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: PDB ENTRY 1HS7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: .1M TRIS, 10% PEG 4K, 0.2M SODIUM REMARK 280 ACETATE, PH 8.5, BATCH, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.79600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.58350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.64400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.58350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.79600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.64400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 30 REMARK 465 SER A 31 REMARK 465 MET A 32 REMARK 465 THR A 33 REMARK 465 GLN A 34 REMARK 465 ILE A 35 REMARK 465 HIS A 36 REMARK 465 GLN A 37 REMARK 465 ILE A 38 REMARK 465 ASN A 39 REMARK 465 ASP A 40 REMARK 465 ILE A 41 REMARK 465 SER A 110 REMARK 465 LYS A 111 REMARK 465 ILE A 112 REMARK 465 ALA A 113 REMARK 465 LYS A 114 REMARK 465 PHE A 115 REMARK 465 GLN A 116 REMARK 465 ASP A 117 REMARK 465 VAL A 118 REMARK 465 LEU A 275 REMARK 465 GLY A 276 REMARK 465 LYS A 277 REMARK 465 TYR A 278 REMARK 465 THR A 279 REMARK 465 ASP A 280 REMARK 465 ASP A 281 REMARK 465 PRO A 282 REMARK 465 ASP A 283 REMARK 465 PHE A 284 REMARK 465 LEU A 285 REMARK 465 ASP A 286 REMARK 465 LYS A 396 REMARK 465 GLY B 30 REMARK 465 SER B 31 REMARK 465 MET B 32 REMARK 465 THR B 33 REMARK 465 GLN B 34 REMARK 465 ILE B 35 REMARK 465 HIS B 36 REMARK 465 GLY B 276 REMARK 465 LYS B 277 REMARK 465 TYR B 278 REMARK 465 THR B 279 REMARK 465 ASP B 280 REMARK 465 ASP B 281 REMARK 465 PRO B 282 REMARK 465 ASP B 283 REMARK 465 PHE B 284 REMARK 465 VAL B 358 REMARK 465 ASN B 359 REMARK 465 VAL B 360 REMARK 465 THR B 361 REMARK 465 LEU B 394 REMARK 465 PRO B 395 REMARK 465 LYS B 396 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 42 CG OD1 OD2 REMARK 470 VAL A 43 CG1 CG2 REMARK 470 LYS A 106 CG CD CE NZ REMARK 470 LYS A 120 CG CD CE NZ REMARK 470 LYS A 172 CG CD CE NZ REMARK 470 LYS A 190 CG CD CE NZ REMARK 470 SER A 193 OG REMARK 470 LYS A 194 CG CD CE NZ REMARK 470 ARG A 198 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 270 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 271 CG CD CE NZ REMARK 470 ASN A 272 CG OD1 ND2 REMARK 470 MET A 274 CG SD CE REMARK 470 LEU A 287 CG CD1 CD2 REMARK 470 LYS A 309 CG CD CE NZ REMARK 470 VAL A 358 CG1 CG2 REMARK 470 HIS A 370 CG ND1 CD2 CE1 NE2 REMARK 470 ASN A 371 CG OD1 ND2 REMARK 470 ARG A 373 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 394 CG CD1 CD2 REMARK 470 PRO A 395 CG CD REMARK 470 GLN B 37 CG CD OE1 NE2 REMARK 470 LYS B 111 CG CD CE NZ REMARK 470 LYS B 114 CG CD CE NZ REMARK 470 ARG B 198 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 227 CG CD CE NZ REMARK 470 ASN B 272 CG OD1 ND2 REMARK 470 MET B 274 CG SD CE REMARK 470 LEU B 275 CG CD1 CD2 REMARK 470 LEU B 285 CG CD1 CD2 REMARK 470 ASP B 286 CG OD1 OD2 REMARK 470 LEU B 287 CG CD1 CD2 REMARK 470 ARG B 292 CG CD NE CZ NH1 NH2 REMARK 470 PHE B 302 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 309 CG CD CE NZ REMARK 470 SER B 324 OG REMARK 470 LYS B 328 CG CD CE NZ REMARK 470 LYS B 335 CG CD CE NZ REMARK 470 ARG B 365 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 373 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 228 N - CA - C ANGL. DEV. = 15.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 107 43.19 -98.88 REMARK 500 LYS A 120 39.99 -81.48 REMARK 500 THR A 145 137.58 179.65 REMARK 500 PRO A 149 40.60 -96.94 REMARK 500 THR A 168 -155.24 -154.41 REMARK 500 VAL A 187 -73.33 -38.18 REMARK 500 THR A 195 22.32 -147.93 REMARK 500 ARG A 273 77.49 82.09 REMARK 500 LYS A 309 46.22 -82.61 REMARK 500 LYS A 318 14.91 57.68 REMARK 500 ARG A 373 -55.00 -29.50 REMARK 500 TYR B 81 18.61 55.66 REMARK 500 SER B 147 72.45 -161.86 REMARK 500 SER B 164 132.25 -171.71 REMARK 500 ARG B 170 150.53 179.16 REMARK 500 CYS B 304 -6.62 -55.39 REMARK 500 LYS B 309 45.27 -81.01 REMARK 500 THR B 336 -19.76 -48.52 REMARK 500 VAL B 340 24.13 -76.25 REMARK 500 PHE B 346 78.97 -151.26 REMARK 500 ASP B 363 -145.82 -90.90 REMARK 500 LYS B 364 -134.23 -104.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 701 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 1 O REMARK 620 2 HOH A 2 O 91.3 REMARK 620 3 ASN A 65 OD1 78.2 75.9 REMARK 620 4 ANP A 397 O1G 113.1 100.4 168.4 REMARK 620 5 ANP A 397 O2B 88.1 160.8 85.3 97.4 REMARK 620 6 ANP A 397 O1A 158.9 88.5 81.4 87.6 85.2 REMARK 620 7 ANP A 397 O2G 62.5 118.8 137.3 54.2 77.6 134.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 702 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 3 O REMARK 620 2 HOH B 4 O 72.0 REMARK 620 3 ASN B 65 OD1 76.1 72.7 REMARK 620 4 ANP B 397 O1G 83.9 89.0 156.2 REMARK 620 5 ANP B 397 O2B 97.6 160.8 89.3 106.2 REMARK 620 6 ANP B 397 O1A 156.9 86.9 89.0 105.6 99.7 REMARK 620 7 ANP B 397 O3A 146.5 138.6 120.0 83.8 56.7 56.5 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 397 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP B 397 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 702 DBREF 3H4L A 32 396 UNP P14242 PMS1_YEAST 1 365 DBREF 3H4L B 32 396 UNP P14242 PMS1_YEAST 1 365 SEQADV 3H4L GLY A 30 UNP P14242 EXPRESSION TAG SEQADV 3H4L SER A 31 UNP P14242 EXPRESSION TAG SEQADV 3H4L GLY B 30 UNP P14242 EXPRESSION TAG SEQADV 3H4L SER B 31 UNP P14242 EXPRESSION TAG SEQRES 1 A 367 GLY SER MET THR GLN ILE HIS GLN ILE ASN ASP ILE ASP SEQRES 2 A 367 VAL HIS ARG ILE THR SER GLY GLN VAL ILE THR ASP LEU SEQRES 3 A 367 THR THR ALA VAL LYS GLU LEU VAL ASP ASN SER ILE ASP SEQRES 4 A 367 ALA ASN ALA ASN GLN ILE GLU ILE ILE PHE LYS ASP TYR SEQRES 5 A 367 GLY LEU GLU SER ILE GLU CYS SER ASP ASN GLY ASP GLY SEQRES 6 A 367 ILE ASP PRO SER ASN TYR GLU PHE LEU ALA LEU LYS HIS SEQRES 7 A 367 TYR THR SER LYS ILE ALA LYS PHE GLN ASP VAL ALA LYS SEQRES 8 A 367 VAL GLN THR LEU GLY PHE ARG GLY GLU ALA LEU SER SER SEQRES 9 A 367 LEU CYS GLY ILE ALA LYS LEU SER VAL ILE THR THR THR SEQRES 10 A 367 SER PRO PRO LYS ALA ASP LYS LEU GLU TYR ASP MET VAL SEQRES 11 A 367 GLY HIS ILE THR SER LYS THR THR THR SER ARG ASN LYS SEQRES 12 A 367 GLY THR THR VAL LEU VAL SER GLN LEU PHE HIS ASN LEU SEQRES 13 A 367 PRO VAL ARG GLN LYS GLU PHE SER LYS THR PHE LYS ARG SEQRES 14 A 367 GLN PHE THR LYS CYS LEU THR VAL ILE GLN GLY TYR ALA SEQRES 15 A 367 ILE ILE ASN ALA ALA ILE LYS PHE SER VAL TRP ASN ILE SEQRES 16 A 367 THR PRO LYS GLY LYS LYS ASN LEU ILE LEU SER THR MET SEQRES 17 A 367 ARG ASN SER SER MET ARG LYS ASN ILE SER SER VAL PHE SEQRES 18 A 367 GLY ALA GLY GLY MET ARG GLY LEU GLU GLU VAL ASP LEU SEQRES 19 A 367 VAL LEU ASP LEU ASN PRO PHE LYS ASN ARG MET LEU GLY SEQRES 20 A 367 LYS TYR THR ASP ASP PRO ASP PHE LEU ASP LEU ASP TYR SEQRES 21 A 367 LYS ILE ARG VAL LYS GLY TYR ILE SER GLN ASN SER PHE SEQRES 22 A 367 GLY CYS GLY ARG ASN SER LYS ASP ARG GLN PHE ILE TYR SEQRES 23 A 367 VAL ASN LYS ARG PRO VAL GLU TYR SER THR LEU LEU LYS SEQRES 24 A 367 CYS CYS ASN GLU VAL TYR LYS THR PHE ASN ASN VAL GLN SEQRES 25 A 367 PHE PRO ALA VAL PHE LEU ASN LEU GLU LEU PRO MET SER SEQRES 26 A 367 LEU ILE ASP VAL ASN VAL THR PRO ASP LYS ARG VAL ILE SEQRES 27 A 367 LEU LEU HIS ASN GLU ARG ALA VAL ILE ASP ILE PHE LYS SEQRES 28 A 367 THR THR LEU SER ASP TYR TYR ASN ARG GLN GLU LEU ALA SEQRES 29 A 367 LEU PRO LYS SEQRES 1 B 367 GLY SER MET THR GLN ILE HIS GLN ILE ASN ASP ILE ASP SEQRES 2 B 367 VAL HIS ARG ILE THR SER GLY GLN VAL ILE THR ASP LEU SEQRES 3 B 367 THR THR ALA VAL LYS GLU LEU VAL ASP ASN SER ILE ASP SEQRES 4 B 367 ALA ASN ALA ASN GLN ILE GLU ILE ILE PHE LYS ASP TYR SEQRES 5 B 367 GLY LEU GLU SER ILE GLU CYS SER ASP ASN GLY ASP GLY SEQRES 6 B 367 ILE ASP PRO SER ASN TYR GLU PHE LEU ALA LEU LYS HIS SEQRES 7 B 367 TYR THR SER LYS ILE ALA LYS PHE GLN ASP VAL ALA LYS SEQRES 8 B 367 VAL GLN THR LEU GLY PHE ARG GLY GLU ALA LEU SER SER SEQRES 9 B 367 LEU CYS GLY ILE ALA LYS LEU SER VAL ILE THR THR THR SEQRES 10 B 367 SER PRO PRO LYS ALA ASP LYS LEU GLU TYR ASP MET VAL SEQRES 11 B 367 GLY HIS ILE THR SER LYS THR THR THR SER ARG ASN LYS SEQRES 12 B 367 GLY THR THR VAL LEU VAL SER GLN LEU PHE HIS ASN LEU SEQRES 13 B 367 PRO VAL ARG GLN LYS GLU PHE SER LYS THR PHE LYS ARG SEQRES 14 B 367 GLN PHE THR LYS CYS LEU THR VAL ILE GLN GLY TYR ALA SEQRES 15 B 367 ILE ILE ASN ALA ALA ILE LYS PHE SER VAL TRP ASN ILE SEQRES 16 B 367 THR PRO LYS GLY LYS LYS ASN LEU ILE LEU SER THR MET SEQRES 17 B 367 ARG ASN SER SER MET ARG LYS ASN ILE SER SER VAL PHE SEQRES 18 B 367 GLY ALA GLY GLY MET ARG GLY LEU GLU GLU VAL ASP LEU SEQRES 19 B 367 VAL LEU ASP LEU ASN PRO PHE LYS ASN ARG MET LEU GLY SEQRES 20 B 367 LYS TYR THR ASP ASP PRO ASP PHE LEU ASP LEU ASP TYR SEQRES 21 B 367 LYS ILE ARG VAL LYS GLY TYR ILE SER GLN ASN SER PHE SEQRES 22 B 367 GLY CYS GLY ARG ASN SER LYS ASP ARG GLN PHE ILE TYR SEQRES 23 B 367 VAL ASN LYS ARG PRO VAL GLU TYR SER THR LEU LEU LYS SEQRES 24 B 367 CYS CYS ASN GLU VAL TYR LYS THR PHE ASN ASN VAL GLN SEQRES 25 B 367 PHE PRO ALA VAL PHE LEU ASN LEU GLU LEU PRO MET SER SEQRES 26 B 367 LEU ILE ASP VAL ASN VAL THR PRO ASP LYS ARG VAL ILE SEQRES 27 B 367 LEU LEU HIS ASN GLU ARG ALA VAL ILE ASP ILE PHE LYS SEQRES 28 B 367 THR THR LEU SER ASP TYR TYR ASN ARG GLN GLU LEU ALA SEQRES 29 B 367 LEU PRO LYS HET ANP A 397 31 HET MG A 701 1 HET ANP B 397 31 HET MG B 702 1 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM MG MAGNESIUM ION FORMUL 3 ANP 2(C10 H17 N6 O12 P3) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *141(H2 O) HELIX 1 1 VAL A 43 ILE A 52 1 10 HELIX 2 2 ASP A 54 ALA A 69 1 16 HELIX 3 3 ASP A 96 TYR A 100 5 5 HELIX 4 4 GLY A 128 ILE A 137 1 10 HELIX 5 5 LEU A 185 LYS A 194 1 10 HELIX 6 6 THR A 195 ASN A 214 1 20 HELIX 7 7 SER A 241 GLY A 251 1 11 HELIX 8 8 ASN A 268 LYS A 271 5 4 HELIX 9 9 TYR A 323 THR A 336 1 14 HELIX 10 10 PRO A 352 SER A 354 5 3 HELIX 11 11 ASN A 371 ALA A 393 1 23 HELIX 12 12 ASN B 39 ILE B 52 1 14 HELIX 13 13 ASP B 54 ALA B 69 1 16 HELIX 14 14 TYR B 81 LEU B 83 5 3 HELIX 15 15 ASN B 99 LEU B 103 5 5 HELIX 16 16 TYR B 108 ALA B 113 1 6 HELIX 17 17 ASP B 117 GLN B 122 1 6 HELIX 18 18 GLU B 129 ILE B 137 1 9 HELIX 19 19 LEU B 185 LYS B 194 1 10 HELIX 20 20 THR B 195 ASN B 214 1 20 HELIX 21 21 SER B 241 GLY B 251 1 11 HELIX 22 22 ALA B 252 MET B 255 5 4 HELIX 23 23 ASN B 268 LYS B 271 5 4 HELIX 24 24 TYR B 323 THR B 336 1 14 HELIX 25 25 PRO B 352 SER B 354 5 3 HELIX 26 26 ASN B 371 LEU B 392 1 22 SHEET 1 A 8 ILE A 162 THR A 168 0 SHEET 2 A 8 ALA A 151 TYR A 156 -1 N GLU A 155 O THR A 163 SHEET 3 A 8 LYS A 139 THR A 145 -1 N VAL A 142 O LEU A 154 SHEET 4 A 8 GLY A 173 SER A 179 -1 O LEU A 177 N SER A 141 SHEET 5 A 8 SER A 85 ASP A 90 -1 N ILE A 86 O VAL A 178 SHEET 6 A 8 GLN A 73 LYS A 79 -1 N GLU A 75 O SER A 89 SHEET 7 A 8 LYS A 218 ILE A 224 1 O TRP A 222 N PHE A 78 SHEET 8 A 8 LYS A 230 SER A 235 -1 O ILE A 233 N VAL A 221 SHEET 1 B 3 HIS A 107 TYR A 108 0 SHEET 2 B 3 LYS B 229 SER B 235 1 O SER B 235 N HIS A 107 SHEET 3 B 3 THR A 123 PHE A 126 1 N GLY A 125 O LEU B 232 SHEET 1 C 9 HIS A 107 TYR A 108 0 SHEET 2 C 9 LYS B 229 SER B 235 1 O SER B 235 N HIS A 107 SHEET 3 C 9 LYS B 218 ILE B 224 -1 N VAL B 221 O ILE B 233 SHEET 4 C 9 GLN B 73 LYS B 79 1 N ILE B 74 O LYS B 218 SHEET 5 C 9 SER B 85 ASP B 90 -1 O SER B 89 N GLU B 75 SHEET 6 C 9 GLY B 173 SER B 179 -1 O VAL B 176 N CYS B 88 SHEET 7 C 9 LYS B 139 THR B 145 -1 N SER B 141 O LEU B 177 SHEET 8 C 9 LYS B 150 TYR B 156 -1 O LEU B 154 N VAL B 142 SHEET 9 C 9 ILE B 162 SER B 169 -1 O THR B 166 N LYS B 153 SHEET 1 D 5 LEU A 258 ASP A 266 0 SHEET 2 D 5 LYS A 290 SER A 298 -1 O VAL A 293 N LEU A 263 SHEET 3 D 5 VAL A 345 GLU A 350 -1 O GLU A 350 N ARG A 292 SHEET 4 D 5 GLN A 312 VAL A 316 1 N PHE A 313 O VAL A 345 SHEET 5 D 5 ARG A 319 VAL A 321 -1 O ARG A 319 N VAL A 316 SHEET 1 E 2 ILE A 356 ASP A 357 0 SHEET 2 E 2 LEU A 368 LEU A 369 -1 O LEU A 368 N ASP A 357 SHEET 1 F 4 LEU B 258 ASP B 266 0 SHEET 2 F 4 LYS B 290 SER B 298 -1 O VAL B 293 N LEU B 263 SHEET 3 F 4 VAL B 345 GLU B 350 -1 O ASN B 348 N LYS B 294 SHEET 4 F 4 GLN B 312 VAL B 316 1 N TYR B 315 O LEU B 349 SHEET 1 G 2 ILE B 356 ASP B 357 0 SHEET 2 G 2 LEU B 368 LEU B 369 -1 O LEU B 368 N ASP B 357 LINK O HOH A 1 MG MG A 701 1555 1555 2.23 LINK O HOH A 2 MG MG A 701 1555 1555 2.10 LINK OD1 ASN A 65 MG MG A 701 1555 1555 2.20 LINK O1G ANP A 397 MG MG A 701 1555 1555 2.15 LINK O2B ANP A 397 MG MG A 701 1555 1555 2.31 LINK O1A ANP A 397 MG MG A 701 1555 1555 2.17 LINK O2G ANP A 397 MG MG A 701 1555 1555 2.94 LINK O HOH B 3 MG MG B 702 1555 1555 2.17 LINK O HOH B 4 MG MG B 702 1555 1555 2.14 LINK OD1 ASN B 65 MG MG B 702 1555 1555 2.16 LINK O1G ANP B 397 MG MG B 702 1555 1555 1.82 LINK O2B ANP B 397 MG MG B 702 1555 1555 2.03 LINK O1A ANP B 397 MG MG B 702 1555 1555 1.89 LINK O3A ANP B 397 MG MG B 702 1555 1555 2.93 CISPEP 1 PRO A 148 PRO A 149 0 -0.61 CISPEP 2 PRO B 148 PRO B 149 0 -0.19 SITE 1 AC1 23 HOH A 1 HOH A 2 ASN A 65 ALA A 69 SITE 2 AC1 23 ASP A 90 GLY A 94 ILE A 95 LEU A 103 SITE 3 AC1 23 GLY A 125 PHE A 126 ARG A 127 GLY A 128 SITE 4 AC1 23 ALA A 130 LEU A 131 THR A 174 LYS A 364 SITE 5 AC1 23 HOH A 398 HOH A 399 HOH A 420 HOH A 439 SITE 6 AC1 23 MG A 701 LYS B 229 ASN B 231 SITE 1 AC2 4 HOH A 1 HOH A 2 ASN A 65 ANP A 397 SITE 1 AC3 20 HOH B 3 HOH B 4 HOH B 5 HOH B 6 SITE 2 AC3 20 HOH B 21 HOH B 29 ASN B 65 ALA B 69 SITE 3 AC3 20 ASP B 90 ILE B 95 LEU B 103 ARG B 127 SITE 4 AC3 20 GLY B 128 ALA B 130 LEU B 131 THR B 174 SITE 5 AC3 20 HOH B 399 HOH B 408 HOH B 423 MG B 702 SITE 1 AC4 4 HOH B 3 HOH B 4 ASN B 65 ANP B 397 CRYST1 75.592 103.288 117.167 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013229 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009682 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008535 0.00000