PDB Short entry for 3H50 HEADER BIOSYNTHETIC PROTEIN 21-APR-09 3H50 TITLE CRYSTAL STRUCTURE OF A TETRACENOMYCIN POLYKETIDE SYNTHESIS PROTEIN TITLE 2 (TCMJ) FROM XANTHOMONAS CAMPESTRIS PV. CAMPESTRIS AT 1.60 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TETRACENOMYCIN POLYKETIDE SYNTHESIS PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XANTHOMONAS CAMPESTRIS PV. CAMPESTRIS; SOURCE 3 ORGANISM_TAXID: 340; SOURCE 4 GENE: NP_636471.1, TCMJ, XCC1096; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS TETRACENOMYCIN POLYKETIDE SYNTHESIS PROTEIN, STRUCTURAL GENOMICS, KEYWDS 2 JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, PSI-2, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 8 01-FEB-23 3H50 1 REMARK SEQADV LINK REVDAT 7 24-JUL-19 3H50 1 REMARK LINK REVDAT 6 01-NOV-17 3H50 1 REMARK REVDAT 5 13-JUL-11 3H50 1 VERSN REVDAT 4 23-MAR-11 3H50 1 JRNL REVDAT 3 12-JAN-11 3H50 1 JRNL REVDAT 2 28-JUL-10 3H50 1 TITLE KEYWDS REVDAT 1 05-MAY-09 3H50 0 SPRSDE 05-MAY-09 3H50 2ILB JRNL AUTH H.L.AXELROD,P.KOZBIAL,D.MCMULLAN,S.S.KRISHNA,M.D.MILLER, JRNL AUTH 2 P.ABDUBEK,C.ACOSTA,T.ASTAKHOVA,D.CARLTON,J.CARUTHERS, JRNL AUTH 3 H.J.CHIU,T.CLAYTON,M.C.DELLER,L.DUAN,Y.ELIAS,J.FEUERHELM, JRNL AUTH 4 S.K.GRZECHNIK,J.C.GRANT,G.W.HAN,L.JAROSZEWSKI,K.K.JIN, JRNL AUTH 5 H.E.KLOCK,M.W.KNUTH,A.KUMAR,D.MARCIANO,A.T.MORSE,K.D.MURPHY, JRNL AUTH 6 E.NIGOGHOSSIAN,L.OKACH,S.OOMMACHEN,J.PAULSEN,R.REYES, JRNL AUTH 7 C.L.RIFE,H.J.TIEN,C.V.TROUT,H.VAN DEN BEDEM,D.WEEKES, JRNL AUTH 8 A.WHITE,Q.XU,C.ZUBIETA,K.O.HODGSON,J.WOOLEY,M.A.ELSLIGER, JRNL AUTH 9 A.M.DEACON,A.GODZIK,S.A.LESLEY,I.A.WILSON JRNL TITL CONFORMATIONAL CHANGES ASSOCIATED WITH THE BINDING OF ZINC JRNL TITL 2 ACETATE AT THE PUTATIVE ACTIVE SITE OF XCTCMJ, A CUPIN FROM JRNL TITL 3 XANTHOMONAS CAMPESTRIS PV. CAMPESTRIS. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 66 1347 2010 JRNL REFN ESSN 1744-3091 JRNL PMID 20944231 JRNL DOI 10.1107/S1744309109021988 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 13912 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 696 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 965 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.2350 REMARK 3 BIN FREE R VALUE SET COUNT : 45 REMARK 3 BIN FREE R VALUE : 0.2420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 855 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 152 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 11.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.16000 REMARK 3 B22 (A**2) : 1.29000 REMARK 3 B33 (A**2) : 0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.27000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.100 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.100 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.667 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 892 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 579 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1215 ; 1.418 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1414 ; 0.874 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 117 ; 6.621 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 45 ;36.853 ;25.111 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 130 ;10.090 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;11.829 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 129 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1047 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 173 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 138 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 602 ; 0.193 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 407 ; 0.173 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 461 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 95 ; 0.157 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.064 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.204 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 42 ; 0.217 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.137 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 4 ; 0.048 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 627 ; 0.941 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 236 ; 0.225 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 909 ; 1.281 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 341 ; 0.957 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 304 ; 1.377 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 113 REMARK 3 ORIGIN FOR THE GROUP (A): 10.7660 71.0120 9.4190 REMARK 3 T TENSOR REMARK 3 T11: 0.0396 T22: -0.0062 REMARK 3 T33: 0.0071 T12: -0.0009 REMARK 3 T13: 0.0054 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 1.0010 L22: 0.3212 REMARK 3 L33: 1.0830 L12: -0.0224 REMARK 3 L13: 0.4056 L23: 0.0472 REMARK 3 S TENSOR REMARK 3 S11: 0.0391 S12: 0.0046 S13: -0.0466 REMARK 3 S21: -0.0083 S22: 0.0128 S23: 0.0287 REMARK 3 S31: -0.0030 S32: -0.0346 S33: -0.0519 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1). HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS 2). ATOM RECORD CONTAINS RESIDUAL B FACTORS REMARK 3 ONLY 3). ZINC WAS MODELED IN FOUR SITES THAT COINCIDE WITH PEAKS REMARK 3 IN THE ANOMALOUS DIFFERENCE FOURIER. X-RAY FLUORESCENCE REMARK 3 MEASUREMENTS CONFIRM THAT ZINC IS PRESENT AND NICKEL IS ABSENT REMARK 3 FROM THE SAMPLE. 4). ACETATE MOLECULES FROM THE CRYSTALLIZATION REMARK 3 SOLUTIONS HAVE BEEN MODELED INTO THE STRUCTURE. 5). UNEXPLAINED REMARK 3 ELECTRON DENSITIES WERE OBSERVED WITHIN COORDINATION DISTANCE OF REMARK 3 ZN 2, ZN 3, AND ZN 4. LIGANDS WERE NOT MODELED INTO THESE REMARK 3 ELECTRON DENSITIES. REMARK 4 REMARK 4 3H50 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052699. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918370,0.979616,0.979305 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13913 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 28.502 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.9900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.61000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35.0% 2-PROPANOL, 0.2M ZN(OAC)2, 0.1M REMARK 280 IMIDAZOLE PH 8.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 24.46000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.01500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 24.46000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.01500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -281.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 37.31162 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 30.62365 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 13 CE NZ REMARK 470 GLN A 20 CD OE1 NE2 REMARK 470 ARG A 42 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 9 17.79 -144.79 REMARK 500 LEU A 15 -146.68 -103.29 REMARK 500 PRO A 98 -178.90 -63.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 114 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 GLN A 46 OE1 94.7 REMARK 620 3 HIS A 80 NE2 95.6 95.4 REMARK 620 4 ACT A 118 O 110.1 153.5 91.7 REMARK 620 5 ACT A 118 OXT 166.0 96.3 92.1 57.9 REMARK 620 6 HOH A 181 O 90.8 90.0 171.3 80.5 80.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 116 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 75 OE2 REMARK 620 2 ACT A 119 OXT 97.3 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 114 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 115 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 116 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 117 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 118 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 119 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 367064 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE DBREF 3H50 A 1 113 UNP Q8PBM3 Q8PBM3_XANCP 1 113 SEQADV 3H50 GLY A 0 UNP Q8PBM3 EXPRESSION TAG SEQRES 1 A 114 GLY MSE GLN TYR ALA THR LEU GLU LEU ASN ASN ALA PHE SEQRES 2 A 114 LYS VAL LEU PHE SER LEU ARG GLN VAL GLN ALA ALA GLU SEQRES 3 A 114 MSE VAL ILE ALA PRO GLY ASP ARG GLU GLY GLY PRO ASP SEQRES 4 A 114 ASN ARG HIS ARG GLY ALA ASP GLN TRP LEU PHE VAL VAL SEQRES 5 A 114 ASP GLY ALA GLY GLU ALA ILE VAL ASP GLY HIS THR GLN SEQRES 6 A 114 ALA LEU GLN ALA GLY SER LEU ILE ALA ILE GLU ARG GLY SEQRES 7 A 114 GLN ALA HIS GLU ILE ARG ASN THR GLY ASP THR PRO LEU SEQRES 8 A 114 LYS THR VAL ASN PHE TYR HIS PRO PRO ALA TYR ASP ALA SEQRES 9 A 114 GLN GLY GLU PRO LEU PRO ALA GLY GLU GLY MODRES 3H50 MSE A 1 MET SELENOMETHIONINE MODRES 3H50 MSE A 26 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 26 8 HET ZN A 114 1 HET ZN A 115 1 HET ZN A 116 1 HET ZN A 117 1 HET ACT A 118 4 HET ACT A 119 4 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM ACT ACETATE ION FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 2 ZN 4(ZN 2+) FORMUL 6 ACT 2(C2 H3 O2 1-) FORMUL 8 HOH *152(H2 O) HELIX 1 1 LEU A 108 GLU A 112 5 5 SHEET 1 A 5 LYS A 13 LEU A 18 0 SHEET 2 A 5 VAL A 21 ILE A 28 -1 O GLU A 25 N LYS A 13 SHEET 3 A 5 LEU A 90 HIS A 97 -1 O TYR A 96 N GLN A 22 SHEET 4 A 5 ASP A 45 ASP A 52 -1 N TRP A 47 O PHE A 95 SHEET 5 A 5 LEU A 71 ILE A 74 -1 O ILE A 74 N GLN A 46 SHEET 1 B 4 ARG A 33 GLY A 35 0 SHEET 2 B 4 HIS A 80 ASN A 84 -1 O ILE A 82 N GLU A 34 SHEET 3 B 4 GLY A 55 VAL A 59 -1 N GLU A 56 O ARG A 83 SHEET 4 B 4 HIS A 62 LEU A 66 -1 O LEU A 66 N GLY A 55 LINK C GLY A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N GLN A 2 1555 1555 1.33 LINK C GLU A 25 N MSE A 26 1555 1555 1.33 LINK C MSE A 26 N VAL A 27 1555 1555 1.34 LINK OD2 ASP A 38 ZN ZN A 115 1555 1555 1.94 LINK NE2 HIS A 41 ZN ZN A 114 1555 1555 2.02 LINK OE1 GLN A 46 ZN ZN A 114 1555 1555 2.06 LINK OE2 GLU A 75 ZN ZN A 116 1555 1555 2.05 LINK NE2 HIS A 80 ZN ZN A 114 1555 1555 2.17 LINK NE2 HIS A 97 ZN ZN A 117 1555 1555 2.26 LINK ZN ZN A 114 O ACT A 118 1555 1555 2.17 LINK ZN ZN A 114 OXT ACT A 118 1555 1555 2.24 LINK ZN ZN A 114 O HOH A 181 1555 1555 2.31 LINK ZN ZN A 116 OXT ACT A 119 1555 1555 2.06 CISPEP 1 HIS A 97 PRO A 98 0 -10.93 SITE 1 AC1 5 HIS A 41 GLN A 46 HIS A 80 ACT A 118 SITE 2 AC1 5 HOH A 181 SITE 1 AC2 3 ASP A 38 HIS A 62 GLU A 106 SITE 1 AC3 4 ARG A 19 GLU A 75 ASP A 87 ACT A 119 SITE 1 AC4 1 HIS A 97 SITE 1 AC5 9 GLU A 34 GLY A 35 ASN A 39 HIS A 41 SITE 2 AC5 9 GLN A 46 HIS A 80 ZN A 114 HOH A 181 SITE 3 AC5 9 HOH A 219 SITE 1 AC6 8 ARG A 19 GLU A 75 ASP A 87 THR A 88 SITE 2 AC6 8 ZN A 116 HOH A 153 HOH A 226 HOH A 229 CRYST1 48.920 72.030 32.750 90.00 110.76 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020442 0.000000 0.007747 0.00000 SCALE2 0.000000 0.013883 0.000000 0.00000 SCALE3 0.000000 0.000000 0.032654 0.00000