PDB Short entry for 3H8I HEADER OXIDOREDUCTASE 29-APR-09 3H8I TITLE THE FIRST X-RAY STRUCTURE OF A SULFIDE:QUINONE TITLE 2 OXIDOREDUCTASE: INSIGHTS INTO SULFIDE OXIDATION MECHANISM COMPND MOL_ID: 1; COMPND 2 MOLECULE: NADH OXIDASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.6.99.3 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACIDIANUS AMBIVALENS; SOURCE 3 ORGANISM_COMMON: DESULFUROLOBUS AMBIVALENS; SOURCE 4 ORGANISM_TAXID: 2283 KEYWDS MEMBRANE PROTEIN, ROSSMAN-LIKE FOLD, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.A.BRITO,F.L.SOUSA,M.STELTER,T.M.BANDEIRAS,C.VONRHEIN, AUTHOR 2 M.TEIXEIRA,M.M.PEREIRA,M.ARCHER REVDAT 2 23-JUN-09 3H8I 1 JRNL REVDAT 1 02-JUN-09 3H8I 0 JRNL AUTH J.A.BRITO,F.L.SOUSA,M.STELTER,T.M.BANDEIRAS, JRNL AUTH 2 C.VONRHEIN,M.TEIXEIRA,M.M.PEREIRA,M.ARCHER JRNL TITL STRUCTURAL AND FUNCTIONAL INSIGHTS INTO JRNL TITL 2 SULFIDE:QUINONE OXIDOREDUCTASE. JRNL REF BIOCHEMISTRY V. 48 5613 2009 JRNL REFN ISSN 0006-2960 JRNL PMID 19438211 JRNL DOI 10.1021/BI9003827 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 2.7.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 44225 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2235 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.72 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.96 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3032 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2404 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2892 REMARK 3 BIN R VALUE (WORKING SET) : 0.2371 REMARK 3 BIN FREE R VALUE : 0.3087 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.62 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 140 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5588 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 157 REMARK 3 SOLVENT ATOMS : 171 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 71.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.43770 REMARK 3 B22 (A**2) : -0.43770 REMARK 3 B33 (A**2) : 0.87540 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.006 ; 2.000 ; 5887 REMARK 3 BOND ANGLES (DEGREES) : 0.907 ; 2.000 ; 7977 REMARK 3 TORSION ANGLES (DEGREES) : 16.240 ; 2.000 ; 1196 REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : 0.006 ; 2.000 ; 160 REMARK 3 GENERAL PLANES (A) : 0.012 ; 5.000 ; 879 REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : 0.914 ; 20.000; 5887 REMARK 3 NON-BONDED CONTACTS (A) : 0.000 ; 5.000 ; 92 REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3H8I COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAY-09. REMARK 100 THE RCSB ID CODE IS RCSB052825. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5; 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44293 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 47.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.50400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.2 M NH4H2PO4, 100 MM TRIS-HCL, PH REMARK 280 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K. 2.2 M REMARK 280 NH4H2PO4/K2HPO4, PH 4.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 108.20667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.10333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 81.15500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 27.05167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 135.25833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 108.20667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 54.10333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 27.05167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 81.15500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 135.25833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -86.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 358 REMARK 465 TYR A 359 REMARK 465 ALA A 360 REMARK 465 VAL A 361 REMARK 465 SER A 362 REMARK 465 VAL A 363 REMARK 465 LYS A 364 REMARK 465 ASP A 365 REMARK 465 ASP A 366 REMARK 465 THR A 367 REMARK 465 TRP A 368 REMARK 465 TYR A 369 REMARK 465 GLY A 370 REMARK 465 GLY A 371 REMARK 465 THR A 372 REMARK 465 VAL A 373 REMARK 465 SER A 374 REMARK 465 ILE A 375 REMARK 465 ALA A 376 REMARK 465 ASP A 377 REMARK 465 PRO A 378 REMARK 465 ALA A 379 REMARK 465 ALA A 380 REMARK 465 VAL A 381 REMARK 465 ASN A 382 REMARK 465 HIS A 383 REMARK 465 LEU A 384 REMARK 465 LYS A 385 REMARK 465 LYS A 386 REMARK 465 GLU A 387 REMARK 465 LEU A 388 REMARK 465 PHE A 389 REMARK 465 THR A 390 REMARK 465 LYS A 391 REMARK 465 TYR A 392 REMARK 465 TYR A 393 REMARK 465 MET A 394 REMARK 465 TRP A 395 REMARK 465 THR A 396 REMARK 465 LYS A 397 REMARK 465 GLY A 398 REMARK 465 ASP A 399 REMARK 465 MET A 400 REMARK 465 ALA A 401 REMARK 465 LEU A 402 REMARK 465 GLU A 403 REMARK 465 LYS A 404 REMARK 465 PHE A 405 REMARK 465 LEU A 406 REMARK 465 ALA A 407 REMARK 465 SER A 408 REMARK 465 TRP A 409 REMARK 465 MET B 1 REMARK 465 GLY B 358 REMARK 465 TYR B 359 REMARK 465 ALA B 360 REMARK 465 VAL B 361 REMARK 465 SER B 362 REMARK 465 VAL B 363 REMARK 465 LYS B 364 REMARK 465 ASP B 365 REMARK 465 ASP B 366 REMARK 465 THR B 367 REMARK 465 TRP B 368 REMARK 465 TYR B 369 REMARK 465 GLY B 370 REMARK 465 GLY B 371 REMARK 465 THR B 372 REMARK 465 VAL B 373 REMARK 465 SER B 374 REMARK 465 ILE B 375 REMARK 465 ALA B 376 REMARK 465 ASP B 377 REMARK 465 PRO B 378 REMARK 465 ALA B 379 REMARK 465 ALA B 380 REMARK 465 VAL B 381 REMARK 465 ASN B 382 REMARK 465 HIS B 383 REMARK 465 LEU B 384 REMARK 465 LYS B 385 REMARK 465 LYS B 386 REMARK 465 GLU B 387 REMARK 465 LEU B 388 REMARK 465 PHE B 389 REMARK 465 THR B 390 REMARK 465 LYS B 391 REMARK 465 TYR B 392 REMARK 465 TYR B 393 REMARK 465 MET B 394 REMARK 465 TRP B 395 REMARK 465 THR B 396 REMARK 465 LYS B 397 REMARK 465 GLY B 398 REMARK 465 ASP B 399 REMARK 465 MET B 400 REMARK 465 ALA B 401 REMARK 465 LEU B 402 REMARK 465 GLU B 403 REMARK 465 LYS B 404 REMARK 465 PHE B 405 REMARK 465 LEU B 406 REMARK 465 ALA B 407 REMARK 465 SER B 408 REMARK 465 TRP B 409 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 43 C - N - CD ANGL. DEV. = -25.4 DEGREES REMARK 500 PRO A 131 C - N - CD ANGL. DEV. = -16.8 DEGREES REMARK 500 PRO B 43 C - N - CD ANGL. DEV. = -25.2 DEGREES REMARK 500 PRO B 131 C - N - CD ANGL. DEV. = -18.8 DEGREES REMARK 500 GLU B 211 N - CA - C ANGL. DEV. = -24.2 DEGREES REMARK 500 TYR B 212 N - CA - CB ANGL. DEV. = -21.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 10 -143.44 -130.53 REMARK 500 ARG A 42 -149.98 -92.74 REMARK 500 HIS A 47 78.30 -118.45 REMARK 500 VAL A 48 92.67 -63.93 REMARK 500 ASP A 56 70.22 -161.13 REMARK 500 GLU A 68 -12.40 -48.33 REMARK 500 ALA A 111 -151.54 -108.64 REMARK 500 ALA A 114 56.70 -69.33 REMARK 500 PRO A 131 -87.37 -29.10 REMARK 500 GLU A 132 33.01 -96.80 REMARK 500 TYR A 212 115.94 85.30 REMARK 500 MET A 294 8.87 80.74 REMARK 500 ILE A 348 -56.43 81.86 REMARK 500 ARG B 10 -140.06 -124.23 REMARK 500 ARG B 42 -150.14 -92.55 REMARK 500 HIS B 47 78.11 -118.96 REMARK 500 VAL B 48 92.81 -62.79 REMARK 500 ASP B 56 69.83 -162.25 REMARK 500 ALA B 111 -151.37 -109.24 REMARK 500 ALA B 114 54.12 -66.71 REMARK 500 PRO B 131 -82.45 -17.88 REMARK 500 ASN B 238 41.01 39.91 REMARK 500 LYS B 253 -4.50 -53.26 REMARK 500 MET B 294 7.70 81.15 REMARK 500 ILE B 348 -57.42 82.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (11X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 GLU B 211 46.4 L L OUTSIDE RANGE REMARK 500 ASP B 300 24.8 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 1001 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE S3H A 1002 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 2001 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 2002 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 2003 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 410 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 2003 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 1001 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE S3H B 1002 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 2001 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 2002 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 410 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 411 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3H8L RELATED DB: PDB REMARK 900 COMPLETE FORM OF THE ENZYME REMARK 999 REMARK 999 SEQUENCE REMARK 999 ACCORDING TO THE AUTHORS THE UNP DATABASE SEQUENCE IS REMARK 999 IN ERROR AT THIS POSITION DBREF 3H8I A 1 409 UNP Q7ZAG8 Q7ZAG8_ACIAM 1 409 DBREF 3H8I B 1 409 UNP Q7ZAG8 Q7ZAG8_ACIAM 1 409 SEQADV 3H8I VAL A 349 UNP Q7ZAG8 MET 349 SEE REMARK 999 SEQADV 3H8I VAL B 349 UNP Q7ZAG8 MET 349 SEE REMARK 999 SEQRES 1 A 409 MET THR LYS VAL LEU VAL LEU GLY GLY ARG PHE GLY ALA SEQRES 2 A 409 LEU THR ALA ALA TYR THR LEU LYS ARG LEU VAL GLY SER SEQRES 3 A 409 LYS ALA ASP VAL LYS VAL ILE ASN LYS SER ARG PHE SER SEQRES 4 A 409 TYR PHE ARG PRO ALA LEU PRO HIS VAL ALA ILE GLY VAL SEQRES 5 A 409 ARG ASP VAL ASP GLU LEU LYS VAL ASP LEU SER GLU ALA SEQRES 6 A 409 LEU PRO GLU LYS GLY ILE GLN PHE GLN GLU GLY THR VAL SEQRES 7 A 409 GLU LYS ILE ASP ALA LYS SER SER MET VAL TYR TYR THR SEQRES 8 A 409 LYS PRO ASP GLY SER MET ALA GLU GLU GLU TYR ASP TYR SEQRES 9 A 409 VAL ILE VAL GLY ILE GLY ALA HIS LEU ALA THR GLU LEU SEQRES 10 A 409 VAL LYS GLY TRP ASP LYS TYR GLY TYR SER VAL CYS GLU SEQRES 11 A 409 PRO GLU PHE ALA THR LYS LEU ARG GLU LYS LEU GLU SER SEQRES 12 A 409 PHE GLN GLY GLY ASN ILE ALA ILE GLY SER GLY PRO PHE SEQRES 13 A 409 TYR GLN GLY HIS ASN PRO LYS PRO LYS VAL PRO GLU ASN SEQRES 14 A 409 PHE VAL PRO ASN ALA ASP SER ALA CYS GLU GLY PRO VAL SEQRES 15 A 409 PHE GLU MET SER LEU MET LEU HIS GLY TYR PHE LYS LYS SEQRES 16 A 409 LYS GLY MET LEU ASP LYS VAL HIS VAL THR VAL PHE SER SEQRES 17 A 409 PRO GLY GLU TYR LEU SER ASP LEU SER PRO ASN SER ARG SEQRES 18 A 409 LYS ALA VAL ALA SER ILE TYR ASN GLN LEU GLY ILE LYS SEQRES 19 A 409 LEU VAL HIS ASN PHE LYS ILE LYS GLU ILE ARG GLU HIS SEQRES 20 A 409 GLU ILE VAL ASP GLU LYS GLY ASN THR ILE PRO ALA ASP SEQRES 21 A 409 ILE THR ILE LEU LEU PRO PRO TYR THR GLY ASN PRO ALA SEQRES 22 A 409 LEU LYS ASN SER THR PRO ASP LEU VAL ASP ASP GLY GLY SEQRES 23 A 409 PHE ILE PRO THR ASP LEU ASN MET VAL SER ILE LYS TYR SEQRES 24 A 409 ASP ASN VAL TYR ALA VAL GLY ASP ALA ASN SER MET THR SEQRES 25 A 409 VAL PRO LYS LEU GLY TYR LEU ALA VAL MET THR GLY ARG SEQRES 26 A 409 ILE ALA ALA GLN HIS LEU ALA ASN ARG LEU GLY VAL PRO SEQRES 27 A 409 THR LYS VAL ASP LYS TYR TYR PRO THR ILE VAL CYS VAL SEQRES 28 A 409 ALA ASP ASN PRO TYR GLU GLY TYR ALA VAL SER VAL LYS SEQRES 29 A 409 ASP ASP THR TRP TYR GLY GLY THR VAL SER ILE ALA ASP SEQRES 30 A 409 PRO ALA ALA VAL ASN HIS LEU LYS LYS GLU LEU PHE THR SEQRES 31 A 409 LYS TYR TYR MET TRP THR LYS GLY ASP MET ALA LEU GLU SEQRES 32 A 409 LYS PHE LEU ALA SER TRP SEQRES 1 B 409 MET THR LYS VAL LEU VAL LEU GLY GLY ARG PHE GLY ALA SEQRES 2 B 409 LEU THR ALA ALA TYR THR LEU LYS ARG LEU VAL GLY SER SEQRES 3 B 409 LYS ALA ASP VAL LYS VAL ILE ASN LYS SER ARG PHE SER SEQRES 4 B 409 TYR PHE ARG PRO ALA LEU PRO HIS VAL ALA ILE GLY VAL SEQRES 5 B 409 ARG ASP VAL ASP GLU LEU LYS VAL ASP LEU SER GLU ALA SEQRES 6 B 409 LEU PRO GLU LYS GLY ILE GLN PHE GLN GLU GLY THR VAL SEQRES 7 B 409 GLU LYS ILE ASP ALA LYS SER SER MET VAL TYR TYR THR SEQRES 8 B 409 LYS PRO ASP GLY SER MET ALA GLU GLU GLU TYR ASP TYR SEQRES 9 B 409 VAL ILE VAL GLY ILE GLY ALA HIS LEU ALA THR GLU LEU SEQRES 10 B 409 VAL LYS GLY TRP ASP LYS TYR GLY TYR SER VAL CYS GLU SEQRES 11 B 409 PRO GLU PHE ALA THR LYS LEU ARG GLU LYS LEU GLU SER SEQRES 12 B 409 PHE GLN GLY GLY ASN ILE ALA ILE GLY SER GLY PRO PHE SEQRES 13 B 409 TYR GLN GLY HIS ASN PRO LYS PRO LYS VAL PRO GLU ASN SEQRES 14 B 409 PHE VAL PRO ASN ALA ASP SER ALA CYS GLU GLY PRO VAL SEQRES 15 B 409 PHE GLU MET SER LEU MET LEU HIS GLY TYR PHE LYS LYS SEQRES 16 B 409 LYS GLY MET LEU ASP LYS VAL HIS VAL THR VAL PHE SER SEQRES 17 B 409 PRO GLY GLU TYR LEU SER ASP LEU SER PRO ASN SER ARG SEQRES 18 B 409 LYS ALA VAL ALA SER ILE TYR ASN GLN LEU GLY ILE LYS SEQRES 19 B 409 LEU VAL HIS ASN PHE LYS ILE LYS GLU ILE ARG GLU HIS SEQRES 20 B 409 GLU ILE VAL ASP GLU LYS GLY ASN THR ILE PRO ALA ASP SEQRES 21 B 409 ILE THR ILE LEU LEU PRO PRO TYR THR GLY ASN PRO ALA SEQRES 22 B 409 LEU LYS ASN SER THR PRO ASP LEU VAL ASP ASP GLY GLY SEQRES 23 B 409 PHE ILE PRO THR ASP LEU ASN MET VAL SER ILE LYS TYR SEQRES 24 B 409 ASP ASN VAL TYR ALA VAL GLY ASP ALA ASN SER MET THR SEQRES 25 B 409 VAL PRO LYS LEU GLY TYR LEU ALA VAL MET THR GLY ARG SEQRES 26 B 409 ILE ALA ALA GLN HIS LEU ALA ASN ARG LEU GLY VAL PRO SEQRES 27 B 409 THR LYS VAL ASP LYS TYR TYR PRO THR ILE VAL CYS VAL SEQRES 28 B 409 ALA ASP ASN PRO TYR GLU GLY TYR ALA VAL SER VAL LYS SEQRES 29 B 409 ASP ASP THR TRP TYR GLY GLY THR VAL SER ILE ALA ASP SEQRES 30 B 409 PRO ALA ALA VAL ASN HIS LEU LYS LYS GLU LEU PHE THR SEQRES 31 B 409 LYS TYR TYR MET TRP THR LYS GLY ASP MET ALA LEU GLU SEQRES 32 B 409 LYS PHE LEU ALA SER TRP HET FAD A1001 53 HET S3H A1002 3 HET PO4 A2001 5 HET PO4 A2002 5 HET PO4 A2003 5 HET PO4 A 410 5 HET PO4 B2003 5 HET FAD B1001 53 HET S3H B1002 3 HET PO4 B2001 5 HET PO4 B2002 5 HET PO4 B 410 5 HET PO4 B 411 5 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM S3H TRISULFANE HETNAM PO4 PHOSPHATE ION FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 S3H 2(H2 S3) FORMUL 5 PO4 9(O4 P 3-) FORMUL 16 HOH *171(H2 O) HELIX 1 1 ARG A 10 GLY A 25 1 16 HELIX 2 2 SER A 26 ALA A 28 5 3 HELIX 3 3 LEU A 62 LEU A 66 1 5 HELIX 4 4 PRO A 67 GLY A 70 5 4 HELIX 5 5 THR A 115 VAL A 118 5 4 HELIX 6 6 GLY A 120 TYR A 124 1 5 HELIX 7 7 GLU A 130 GLU A 132 5 3 HELIX 8 8 PHE A 133 PHE A 144 1 12 HELIX 9 9 GLU A 179 LYS A 196 1 18 HELIX 10 10 SER A 217 GLY A 232 1 16 HELIX 11 11 ASN A 271 ASN A 276 1 6 HELIX 12 12 GLY A 306 ASN A 309 5 4 HELIX 13 13 LEU A 316 LEU A 335 1 20 HELIX 14 14 CYS A 350 ASN A 354 5 5 HELIX 15 15 ARG B 10 GLY B 25 1 16 HELIX 16 16 SER B 26 ALA B 28 5 3 HELIX 17 17 LEU B 62 LEU B 66 1 5 HELIX 18 18 PRO B 67 GLY B 70 5 4 HELIX 19 19 THR B 115 VAL B 118 5 4 HELIX 20 20 GLY B 120 TYR B 124 1 5 HELIX 21 21 GLU B 132 PHE B 144 1 13 HELIX 22 22 GLU B 179 LYS B 196 1 18 HELIX 23 23 SER B 217 GLY B 232 1 16 HELIX 24 24 ASN B 271 ASN B 276 1 6 HELIX 25 25 GLY B 306 ASN B 309 5 4 HELIX 26 26 LEU B 316 LEU B 335 1 20 HELIX 27 27 CYS B 350 ASN B 354 5 5 SHEET 1 A 5 GLN A 72 GLU A 75 0 SHEET 2 A 5 ASP A 29 ASN A 34 1 N VAL A 32 O GLN A 74 SHEET 3 A 5 LYS A 3 LEU A 7 1 N VAL A 4 O ASP A 29 SHEET 4 A 5 TYR A 104 VAL A 107 1 O ILE A 106 N LEU A 7 SHEET 5 A 5 VAL A 302 ALA A 304 1 O TYR A 303 N VAL A 107 SHEET 1 B 2 PHE A 38 PHE A 41 0 SHEET 2 B 2 LEU A 58 ASP A 61 -1 O VAL A 60 N SER A 39 SHEET 1 C 3 THR A 77 ASP A 82 0 SHEET 2 C 3 MET A 87 THR A 91 -1 O MET A 87 N ASP A 82 SHEET 3 C 3 MET A 97 GLU A 101 -1 O ALA A 98 N TYR A 90 SHEET 1 D 2 HIS A 112 LEU A 113 0 SHEET 2 D 2 TYR A 268 THR A 269 -1 O THR A 269 N HIS A 112 SHEET 1 E 5 GLY A 125 SER A 127 0 SHEET 2 E 5 ILE A 261 LEU A 265 1 O LEU A 264 N TYR A 126 SHEET 3 E 5 GLY A 147 SER A 153 1 N ALA A 150 O ILE A 263 SHEET 4 E 5 VAL A 202 PHE A 207 1 O HIS A 203 N GLY A 147 SHEET 5 E 5 LYS A 234 VAL A 236 1 O LYS A 234 N VAL A 206 SHEET 1 F 3 ILE A 241 ILE A 244 0 SHEET 2 F 3 GLU A 248 ASP A 251 -1 O VAL A 250 N LYS A 242 SHEET 3 F 3 THR A 256 PRO A 258 -1 O ILE A 257 N ILE A 249 SHEET 1 G 5 GLN B 72 GLU B 75 0 SHEET 2 G 5 ASP B 29 ASN B 34 1 N VAL B 32 O GLN B 74 SHEET 3 G 5 LYS B 3 LEU B 7 1 N VAL B 4 O ASP B 29 SHEET 4 G 5 TYR B 104 VAL B 107 1 O ILE B 106 N LEU B 5 SHEET 5 G 5 VAL B 302 ALA B 304 1 O TYR B 303 N VAL B 107 SHEET 1 H 2 PHE B 38 PHE B 41 0 SHEET 2 H 2 LEU B 58 ASP B 61 -1 O VAL B 60 N SER B 39 SHEET 1 I 3 THR B 77 ASP B 82 0 SHEET 2 I 3 MET B 87 THR B 91 -1 O TYR B 89 N GLU B 79 SHEET 3 I 3 MET B 97 GLU B 101 -1 O GLU B 100 N VAL B 88 SHEET 1 J 2 HIS B 112 LEU B 113 0 SHEET 2 J 2 TYR B 268 THR B 269 -1 O THR B 269 N HIS B 112 SHEET 1 K 5 GLY B 125 SER B 127 0 SHEET 2 K 5 ILE B 261 LEU B 265 1 O LEU B 264 N TYR B 126 SHEET 3 K 5 GLY B 147 SER B 153 1 N ALA B 150 O ILE B 263 SHEET 4 K 5 VAL B 202 PHE B 207 1 O THR B 205 N ILE B 149 SHEET 5 K 5 LYS B 234 VAL B 236 1 O LYS B 234 N VAL B 206 SHEET 1 L 3 ILE B 241 ILE B 244 0 SHEET 2 L 3 GLU B 248 ASP B 251 -1 O VAL B 250 N GLU B 243 SHEET 3 L 3 THR B 256 PRO B 258 -1 O ILE B 257 N ILE B 249 LINK SG CYS A 129 C8M FAD A1001 1555 1555 1.53 LINK SG CYS B 129 C8M FAD B1001 1555 1555 1.54 LINK SG CYS A 178 S1 S3H A1002 1555 1555 1.97 LINK SG CYS B 178 S1 S3H B1002 1555 1555 1.94 LINK SG BCYS A 350 S3 S3H A1002 1555 1555 2.10 LINK SG BCYS B 350 S3 S3H B1002 1555 1555 2.03 CISPEP 1 ASN A 161 PRO A 162 0 -1.57 CISPEP 2 VAL A 313 PRO A 314 0 1.87 CISPEP 3 ASN B 161 PRO B 162 0 -2.65 CISPEP 4 VAL B 313 PRO B 314 0 0.99 SITE 1 AC1 30 GLY A 8 GLY A 9 ARG A 10 PHE A 11 SITE 2 AC1 30 GLY A 12 ASN A 34 LYS A 35 ALA A 44 SITE 3 AC1 30 GLY A 76 THR A 77 VAL A 78 GLY A 108 SITE 4 AC1 30 ILE A 109 CYS A 129 PRO A 181 ASN A 271 SITE 5 AC1 30 GLY A 306 ASP A 307 LYS A 315 LEU A 316 SITE 6 AC1 30 GLY A 317 TYR A 318 ALA A 320 HOH A 411 SITE 7 AC1 30 HOH A 412 HOH A 418 HOH A 420 HOH A 436 SITE 8 AC1 30 HOH A 475 PO4 A2003 SITE 1 AC2 4 CYS A 178 LYS A 315 LEU A 316 CYS A 350 SITE 1 AC3 4 SER A 36 ARG A 37 GLU A 75 HOH A 502 SITE 1 AC4 5 HIS A 190 LYS A 194 LEU A 199 GLN A 230 SITE 2 AC4 5 LYS B 343 SITE 1 AC5 9 ALA A 111 HIS A 112 ASN A 271 PRO A 272 SITE 2 AC5 9 HOH A 436 HOH A 453 HOH A 458 HOH A 464 SITE 3 AC5 9 FAD A1001 SITE 1 AC6 5 PRO A 155 TYR A 157 LYS A 240 HOH A 454 SITE 2 AC6 5 HOH A 461 SITE 1 AC7 5 ALA B 111 HIS B 112 ASN B 271 HOH B 426 SITE 2 AC7 5 FAD B1001 SITE 1 AC8 28 GLY B 8 GLY B 9 ARG B 10 PHE B 11 SITE 2 AC8 28 GLY B 12 ASN B 34 LYS B 35 ALA B 44 SITE 3 AC8 28 GLY B 76 THR B 77 VAL B 78 GLY B 108 SITE 4 AC8 28 ILE B 109 CYS B 129 PRO B 181 ASN B 271 SITE 5 AC8 28 GLY B 306 ASP B 307 LYS B 315 LEU B 316 SITE 6 AC8 28 GLY B 317 TYR B 318 ALA B 320 HOH B 412 SITE 7 AC8 28 HOH B 413 HOH B 419 HOH B 430 PO4 B2003 SITE 1 AC9 4 CYS B 178 LYS B 315 LEU B 316 CYS B 350 SITE 1 BC1 4 SER B 36 ARG B 37 GLU B 75 HOH B 460 SITE 1 BC2 3 HOH A 487 HIS B 190 LYS B 194 SITE 1 BC3 7 LYS A 3 GLN A 72 SER B 85 TYR B 89 SITE 2 BC3 7 GLU B 99 HOH B 445 HOH B 452 SITE 1 BC4 4 TYR A 89 LYS B 92 ASP B 94 HOH B 449 CRYST1 178.550 178.550 162.310 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005601 0.003234 0.000000 0.00000 SCALE2 0.000000 0.006467 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006161 0.00000