PDB Short entry for 3HA7 HEADER TRANSFERASE 01-MAY-09 3HA7 TITLE CRYSTAL STRUCTURE OF HMA (MMAA4) FROM MYCOBACTERIUM TUBERCULOSIS TITLE 2 COMPLEXED WITH S-ADENOSYL-N-DECYL-AMINOETHYL (SADAE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHOXY MYCOLIC ACID SYNTHASE 4; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MMAA4 (METHYL MYCOLIC ACID SYNTHASE 4) (MMA4) (HYDROXY COMPND 5 MYCOLIC ACID SYNTHASE); COMPND 6 EC: 2.1.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: MMAA4, MMAA4 (RV0642C), RV0642C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-15B KEYWDS S-ADENOSYLMETHIONINE-DEPENDENT METHYLTRANSFERASE FOLD, KEYWDS 2 METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.VAUBOURGEIX,F.BOISSIER,S.JULIEN,L.MOUREY REVDAT 3 06-SEP-23 3HA7 1 REMARK SEQADV REVDAT 2 13-JUL-11 3HA7 1 JRNL VERSN REVDAT 1 12-MAY-09 3HA7 0 JRNL AUTH J.VAUBOURGEIX,F.BARDOU,F.BOISSIER,S.JULIEN,P.CONSTANT, JRNL AUTH 2 O.PLOUX,M.DAFFE,A.QUEMARD,L.MOUREY JRNL TITL SADAE, A POTENT BISUBSTRATE INHIBITOR OF MYCOBACTERIUM JRNL TITL 2 TUBERCULOSIS MYCOLIC ACID METHYLTRANSFERASES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 15905 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 849 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1139 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2081 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 45 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 60.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 76.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.18000 REMARK 3 B22 (A**2) : 1.18000 REMARK 3 B33 (A**2) : -1.77000 REMARK 3 B12 (A**2) : 0.59000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.277 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.216 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.174 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.335 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2167 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2939 ; 1.439 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 267 ; 5.997 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 96 ;35.408 ;23.438 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 326 ;15.089 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;23.654 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 323 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1653 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 948 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1542 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 76 ; 0.144 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 22 ; 0.157 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.379 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1390 ; 0.645 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2143 ; 1.079 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 907 ; 1.764 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 796 ; 2.599 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 27 A 300 REMARK 3 ORIGIN FOR THE GROUP (A): -32.2881 5.9566 16.9297 REMARK 3 T TENSOR REMARK 3 T11: -0.1571 T22: -0.1799 REMARK 3 T33: -0.2201 T12: 0.0648 REMARK 3 T13: -0.0352 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 3.1581 L22: 4.1303 REMARK 3 L33: 5.0745 L12: -1.5419 REMARK 3 L13: 0.3698 L23: -0.7764 REMARK 3 S TENSOR REMARK 3 S11: -0.2006 S12: 0.1831 S13: 0.4496 REMARK 3 S21: 0.0792 S22: 0.1888 S23: -0.2439 REMARK 3 S31: -0.4334 S32: -0.1045 S33: 0.0119 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3HA7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000052886. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-SEP-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5-9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9395 REMARK 200 MONOCHROMATOR : CHANNEL CUT ESRF MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16765 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 18.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.32700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 2FK8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4-28% PEG 3350, PH 5-9, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.35967 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 136.71933 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 136.71933 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 68.35967 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 313 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -16 REMARK 465 GLY A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 HIS A -12 REMARK 465 TYR A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 SER A -6 REMARK 465 SER A -5 REMARK 465 GLY A -4 REMARK 465 LEU A -3 REMARK 465 VAL A -2 REMARK 465 PRO A -1 REMARK 465 ARG A 0 REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 HIS A 3 REMARK 465 MET A 4 REMARK 465 ALA A 5 REMARK 465 GLU A 6 REMARK 465 LYS A 7 REMARK 465 PRO A 8 REMARK 465 ILE A 9 REMARK 465 SER A 10 REMARK 465 PRO A 11 REMARK 465 THR A 12 REMARK 465 LYS A 13 REMARK 465 THR A 14 REMARK 465 ARG A 15 REMARK 465 THR A 16 REMARK 465 ARG A 17 REMARK 465 PHE A 18 REMARK 465 GLU A 19 REMARK 465 ASP A 20 REMARK 465 ILE A 21 REMARK 465 GLN A 22 REMARK 465 ALA A 23 REMARK 465 HIS A 24 REMARK 465 TYR A 25 REMARK 465 ASP A 26 REMARK 465 MET A 186 REMARK 465 ALA A 187 REMARK 465 THR A 263 REMARK 465 SER A 264 REMARK 465 ALA A 301 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 27 CG1 CG2 REMARK 470 SER A 28 OG REMARK 470 ASP A 29 CG OD1 OD2 REMARK 470 ASP A 30 CG OD1 OD2 REMARK 470 LEU A 34 CG CD1 CD2 REMARK 470 ARG A 40 CG CD NE CZ NH1 NH2 REMARK 470 THR A 53 OG1 CG2 REMARK 470 LYS A 106 CG CD CE NZ REMARK 470 ARG A 111 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 113 CG CD OE1 OE2 REMARK 470 ASP A 120 CG OD1 OD2 REMARK 470 ASN A 122 CG OD1 ND2 REMARK 470 HIS A 182 CG ND1 CD2 CE1 NE2 REMARK 470 TYR A 184 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 185 CG CD OE1 OE2 REMARK 470 ARG A 189 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 191 CG CD CE NZ REMARK 470 LEU A 193 CG CD1 CD2 REMARK 470 LYS A 202 CG CD CE NZ REMARK 470 GLU A 207 CG CD OE1 OE2 REMARK 470 ILE A 208 CD1 REMARK 470 LYS A 256 CE NZ REMARK 470 LYS A 258 CG CD CE NZ REMARK 470 ILE A 260 CG1 CG2 CD1 REMARK 470 GLU A 261 CG CD OE1 OE2 REMARK 470 GLU A 265 CD OE1 OE2 REMARK 470 GLU A 266 CG CD OE1 OE2 REMARK 470 ASN A 269 CG OD1 ND2 REMARK 470 ARG A 270 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 199 O VAL A 231 4565 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 42 59.03 -103.23 REMARK 500 THR A 53 158.39 -49.68 REMARK 500 ALA A 136 56.85 -144.28 REMARK 500 PRO A 168 -169.07 -71.62 REMARK 500 SER A 180 -161.42 -122.91 REMARK 500 HIS A 182 136.29 -38.01 REMARK 500 ARG A 189 8.06 -67.02 REMARK 500 VAL A 205 12.89 -62.23 REMARK 500 THR A 206 -44.71 -131.49 REMARK 500 PRO A 232 -176.80 -67.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE B32 A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2FK7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HMA (MMAA4) FROM MYCOBACTERIUM TUBERCULOSIS, REMARK 900 APO-FORM REMARK 900 RELATED ID: 2FK8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HMA (MMAA4) FROM MYCOBACTERIUM TUBERCULOSIS REMARK 900 COMPLEXED WITH S-ADENOSYLMETHIONINE REMARK 900 RELATED ID: 3HA3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HMA (MMAA4) FROM MYCOBACTERIUM TUBERCULOSIS REMARK 900 COMPLEXED WITH S-ADENOSYLHOMOCYSTEINE REMARK 900 RELATED ID: 3HA5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HMA (MMAA4) FROM MYCOBACTERIUM TUBERCULOSIS REMARK 900 COMPLEXED WITH SINEFUNGIN DBREF 3HA7 A 4 301 UNP Q79FX8 Q79FX8_MYCTU 4 301 SEQADV 3HA7 MET A -16 UNP Q79FX8 EXPRESSION TAG SEQADV 3HA7 GLY A -15 UNP Q79FX8 EXPRESSION TAG SEQADV 3HA7 SER A -14 UNP Q79FX8 EXPRESSION TAG SEQADV 3HA7 SER A -13 UNP Q79FX8 EXPRESSION TAG SEQADV 3HA7 HIS A -12 UNP Q79FX8 EXPRESSION TAG SEQADV 3HA7 TYR A -11 UNP Q79FX8 EXPRESSION TAG SEQADV 3HA7 HIS A -10 UNP Q79FX8 EXPRESSION TAG SEQADV 3HA7 HIS A -9 UNP Q79FX8 EXPRESSION TAG SEQADV 3HA7 HIS A -8 UNP Q79FX8 EXPRESSION TAG SEQADV 3HA7 HIS A -7 UNP Q79FX8 EXPRESSION TAG SEQADV 3HA7 SER A -6 UNP Q79FX8 EXPRESSION TAG SEQADV 3HA7 SER A -5 UNP Q79FX8 EXPRESSION TAG SEQADV 3HA7 GLY A -4 UNP Q79FX8 EXPRESSION TAG SEQADV 3HA7 LEU A -3 UNP Q79FX8 EXPRESSION TAG SEQADV 3HA7 VAL A -2 UNP Q79FX8 EXPRESSION TAG SEQADV 3HA7 PRO A -1 UNP Q79FX8 EXPRESSION TAG SEQADV 3HA7 ARG A 0 UNP Q79FX8 EXPRESSION TAG SEQADV 3HA7 GLY A 1 UNP Q79FX8 EXPRESSION TAG SEQADV 3HA7 SER A 2 UNP Q79FX8 EXPRESSION TAG SEQADV 3HA7 HIS A 3 UNP Q79FX8 EXPRESSION TAG SEQRES 1 A 318 MET GLY SER SER HIS TYR HIS HIS HIS HIS SER SER GLY SEQRES 2 A 318 LEU VAL PRO ARG GLY SER HIS MET ALA GLU LYS PRO ILE SEQRES 3 A 318 SER PRO THR LYS THR ARG THR ARG PHE GLU ASP ILE GLN SEQRES 4 A 318 ALA HIS TYR ASP VAL SER ASP ASP PHE PHE ALA LEU PHE SEQRES 5 A 318 GLN ASP PRO THR ARG THR TYR SER CYS ALA TYR PHE GLU SEQRES 6 A 318 PRO PRO GLU LEU THR LEU GLU GLU ALA GLN TYR ALA LYS SEQRES 7 A 318 VAL ASP LEU ASN LEU ASP LYS LEU ASP LEU LYS PRO GLY SEQRES 8 A 318 MET THR LEU LEU ASP ILE GLY CYS GLY TRP GLY THR THR SEQRES 9 A 318 MET ARG ARG ALA VAL GLU ARG PHE ASP VAL ASN VAL ILE SEQRES 10 A 318 GLY LEU THR LEU SER LYS ASN GLN HIS ALA ARG CYS GLU SEQRES 11 A 318 GLN VAL LEU ALA SER ILE ASP THR ASN ARG SER ARG GLN SEQRES 12 A 318 VAL LEU LEU GLN GLY TRP GLU ASP PHE ALA GLU PRO VAL SEQRES 13 A 318 ASP ARG ILE VAL SER ILE GLU ALA PHE GLU HIS PHE GLY SEQRES 14 A 318 HIS GLU ASN TYR ASP ASP PHE PHE LYS ARG CYS PHE ASN SEQRES 15 A 318 ILE MET PRO ALA ASP GLY ARG MET THR VAL GLN SER SER SEQRES 16 A 318 VAL SER TYR HIS PRO TYR GLU MET ALA ALA ARG GLY LYS SEQRES 17 A 318 LYS LEU SER PHE GLU THR ALA ARG PHE ILE LYS PHE ILE SEQRES 18 A 318 VAL THR GLU ILE PHE PRO GLY GLY ARG LEU PRO SER THR SEQRES 19 A 318 GLU MET MET VAL GLU HIS GLY GLU LYS ALA GLY PHE THR SEQRES 20 A 318 VAL PRO GLU PRO LEU SER LEU ARG PRO HIS TYR ILE LYS SEQRES 21 A 318 THR LEU ARG ILE TRP GLY ASP THR LEU GLN SER ASN LYS SEQRES 22 A 318 ASP LYS ALA ILE GLU VAL THR SER GLU GLU VAL TYR ASN SEQRES 23 A 318 ARG TYR MET LYS TYR LEU ARG GLY CYS GLU HIS TYR PHE SEQRES 24 A 318 THR ASP GLU MET LEU ASP CYS SER LEU VAL THR TYR LEU SEQRES 25 A 318 LYS PRO GLY ALA ALA ALA HET B32 A 302 34 HETNAM B32 5'-S-[2-(DECYLAMINO)ETHYL]-5'-THIOADENOSINE HETSYN B32 S-ADENOSYL-N-DECYL-AMINOETHYL (SADAE) FORMUL 2 B32 C22 H38 N6 O3 S FORMUL 3 HOH *45(H2 O) HELIX 1 1 SER A 28 LEU A 34 1 7 HELIX 2 2 THR A 53 LYS A 68 1 16 HELIX 3 3 GLY A 85 ASP A 96 1 12 HELIX 4 4 SER A 105 SER A 118 1 14 HELIX 5 5 GLY A 131 PHE A 135 5 5 HELIX 6 6 ALA A 147 PHE A 151 5 5 HELIX 7 7 GLY A 152 GLU A 154 5 3 HELIX 8 8 ASN A 155 MET A 167 1 13 HELIX 9 9 GLY A 190 ILE A 208 1 19 HELIX 10 10 SER A 216 ALA A 227 1 12 HELIX 11 11 LEU A 237 ASN A 255 1 19 HELIX 12 12 ASN A 255 GLU A 261 1 7 HELIX 13 13 GLU A 265 ASP A 284 1 20 SHEET 1 A 7 ARG A 125 LEU A 129 0 SHEET 2 A 7 ASN A 98 THR A 103 1 N GLY A 101 O LEU A 128 SHEET 3 A 7 THR A 76 ILE A 80 1 N ASP A 79 O ILE A 100 SHEET 4 A 7 ARG A 141 ILE A 145 1 O ARG A 141 N LEU A 78 SHEET 5 A 7 ARG A 172 VAL A 179 1 O GLN A 176 N SER A 144 SHEET 6 A 7 ASP A 288 LEU A 295 -1 O SER A 290 N SER A 177 SHEET 7 A 7 LEU A 235 SER A 236 -1 N LEU A 235 O LEU A 291 CISPEP 1 GLU A 48 PRO A 49 0 0.64 SITE 1 AC1 19 TYR A 42 GLY A 81 GLY A 83 THR A 103 SITE 2 AC1 19 LEU A 104 GLN A 108 GLY A 131 TRP A 132 SITE 3 AC1 19 GLU A 133 GLU A 146 ALA A 147 GLU A 149 SITE 4 AC1 19 PHE A 151 SER A 178 ILE A 204 PHE A 209 SITE 5 AC1 19 TYR A 241 TYR A 274 PHE A 282 CRYST1 57.429 57.429 205.079 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017413 0.010053 0.000000 0.00000 SCALE2 0.000000 0.020106 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004876 0.00000